Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0158 Marchantia polymorpha HOM05D003562 ORTHO05D004074 5.0e-172 607.8 342 100.0
Hma1.2p1_1396F.1_g280630 Hydrangea macrophylla HOM05D003562 ORTHO05D004074 8.3e-34 148.7 175 45.1
arahy.Tifrunner.gnm1.ann1.T72YSL Arachis hypogaea HOM05D003562 ORTHO05D004074 5.4e-33 146.0 175 42.9
Ca_27897_v3 Cicer arietinum L. HOM05D003562 ORTHO05D004074 9.2e-33 145.2 176 42.0
Pp3c12_13390 Physcomitrium patens HOM05D003562 ORTHO05D004074 9.2e-33 145.2 332 29.8
PGR142G2845 Punica granatum HOM05D003562 ORTHO05D004074 1.0e-31 141.7 170 44.1
Manes.04G160200 Manihot esculenta HOM05D003562 ORTHO05D004074 1.3e-31 141.4 174 41.4
Pp3c25_14670 Physcomitrium patens HOM05D003562 ORTHO05D004074 1.3e-31 141.4 276 31.9
Sed0007359 Sechium edule HOM05D003562 ORTHO05D004074 1.3e-31 141.4 172 44.2
Atru.chr12.1362 Acer truncatum HOM05D003562 ORTHO05D004074 3.0e-31 140.2 174 45.4
CSS0019906 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 3.0e-31 140.2 168 44.0
CSS0041933 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 3.0e-31 140.2 168 44.0
Dinv09273 Davidia involucrata HOM05D003562 ORTHO05D004074 3.0e-31 140.2 176 43.2
CiPaw.13G012700 Carya illinoinensis HOM05D003562 ORTHO05D004074 3.9e-31 139.8 175 41.7
MD02G1270100 Malus domestica HOM05D003562 ORTHO05D004074 3.9e-31 139.8 171 42.1
CSS0045780 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 5.1e-31 139.4 277 32.9
Prupe.7G009600 Prunus persica HOM05D003562 ORTHO05D004074 5.1e-31 139.4 171 43.3
ClCG01G007760 Citrullus lanatus HOM05D003562 ORTHO05D004074 6.6e-31 139.0 167 44.3
MELO3C005120.2 Cucumis melo HOM05D003562 ORTHO05D004074 1.1e-30 138.3 172 43.0
GSVIVG01037424001 Vitis vinifera HOM05D003562 ORTHO05D004074 1.5e-30 137.9 165 43.6
SMO164G0021 Selaginella moellendorffii HOM05D003562 ORTHO05D004074 1.9e-30 137.5 160 45.0
Potri.001G026700 Populus trichocarpa HOM05D003562 ORTHO05D004074 3.3e-30 136.7 163 43.6
Glyma.11G154000 Glycine max HOM05D003562 ORTHO05D004074 4.3e-30 136.3 169 43.2
Lj8P275T68 Lonicera japonica HOM05D003562 ORTHO05D004074 4.3e-30 136.3 167 43.7
FvH4_5g25300 Fragaria vesca HOM05D003562 ORTHO05D004074 5.6e-30 136.0 173 42.2
FAN18G1494 Fragaria x ananassa HOM05D003562 ORTHO05D004074 5.6e-30 136.0 173 42.2
CsaV3_5G024840 Cucumis sativus L. HOM05D003562 ORTHO05D004074 7.3e-30 135.6 176 42.6
MD06G1045900 Malus domestica HOM05D003562 ORTHO05D004074 7.3e-30 135.6 171 41.5
Nn2g14890 Nelumbo nucifera HOM05D003562 ORTHO05D004074 7.3e-30 135.6 174 42.0
vmacro13748 Vaccinium macrocarpon HOM05D003562 ORTHO05D004074 7.3e-30 135.6 171 42.7
Nitab4.5_0000320g0220 Nicotiana tabacum HOM05D003562 ORTHO05D004074 9.5e-30 135.2 165 41.2
TWI32G0119 Tripterygium wilfordii HOM05D003562 ORTHO05D004074 9.5e-30 135.2 175 43.4
SHI01272 Sapria himalayana HOM05D003562 ORTHO05D004074 1.2e-29 134.8 168 41.1
FAN13G2751 Fragaria x ananassa HOM05D003562 ORTHO05D004074 1.6e-29 134.4 173 41.6
Glyma.06G083300 Glycine max HOM05D003562 ORTHO05D004074 2.1e-29 134.0 169 42.6
Peaxi162Scf00025g00152 Petunia axillaris HOM05D003562 ORTHO05D004074 2.1e-29 134.0 170 41.2
TPR.G17800 Trifolium pratense HOM05D003562 ORTHO05D004074 2.8e-29 133.7 177 40.7
Lalb_Chr03g0032801 Lupinus albus HOM05D003562 ORTHO05D004074 3.6e-29 133.3 169 40.8
Haze_03073 Corylus avellana HOM05D003562 ORTHO05D004074 4.7e-29 132.9 171 38.6
RhsimUnG0111400 Rhododendron simsii HOM05D003562 ORTHO05D004074 4.7e-29 132.9 169 41.4
Sabra03G0147400 Salix brachista HOM05D003562 ORTHO05D004074 4.7e-29 132.9 163 43.6
Cfa010886 Carpinus fangiana HOM05D003562 ORTHO05D004074 6.2e-29 132.5 171 39.8
Medtr3g017470 Medicago truncatula HOM05D003562 ORTHO05D004074 6.2e-29 132.5 176 39.2
Lj3g0004154 Lotus japonicus HOM05D003562 ORTHO05D004074 8.1e-29 132.1 171 40.9
QL04p014579 Quercus lobata HOM05D003562 ORTHO05D004074 8.1e-29 132.1 176 39.8
QL04p014940 Quercus lobata HOM05D003562 ORTHO05D004074 8.1e-29 132.1 176 39.8
Rhsim07G0066600 Rhododendron simsii HOM05D003562 ORTHO05D004074 8.1e-29 132.1 169 41.4
SGA_v2.0_scaffold71G23983 Striga asiatica HOM05D003562 ORTHO05D004074 8.1e-29 132.1 166 43.4
Aqoxy1G00347 Aquilegia oxysepala HOM05D003562 ORTHO05D004074 1.1e-28 131.7 165 41.8
CDE12G0865 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 1.1e-28 131.7 160 43.1
Cc00_g22970 Coffea canephora HOM05D003562 ORTHO05D004074 1.1e-28 131.7 169 41.4
Cc01_g07880 Coffea canephora HOM05D003562 ORTHO05D004074 1.1e-28 131.7 167 41.9
Lsat_1_v5_gn_6_15520 Lactuca sativa HOM05D003562 ORTHO05D004074 1.1e-28 131.7 164 44.5
Thecc.10G162500 Theobroma cacao HOM05D003562 ORTHO05D004074 1.1e-28 131.7 176 39.8
Duzib128G0310 Durio zibethinus HOM05D003562 ORTHO05D004074 1.4e-28 131.3 177 38.4
TAR636G2713 Trochodendron aralioides HOM05D003562 ORTHO05D004074 1.4e-28 131.3 163 41.1
VMungo1080G1790 Vigna mungo HOM05D003562 ORTHO05D004074 1.4e-28 131.3 176 39.8
Potri.T125306 Populus trichocarpa HOM05D003562 ORTHO05D004074 1.8e-28 131.0 163 43.6
CiPaw.14G007100 Carya illinoinensis HOM05D003562 ORTHO05D004074 2.3e-28 130.6 168 40.5
Potri.003G198000 Populus trichocarpa HOM05D003562 ORTHO05D004074 2.3e-28 130.6 163 43.6
C02p12410 Brassica napus HOM05D003562 ORTHO05D004074 3.1e-28 130.2 169 40.8
CANSAT35G1715 Cannabis sativa HOM05D003562 ORTHO05D004074 3.1e-28 130.2 168 39.9
Cpa.g.sc30.42 Carica papaya HOM05D003562 ORTHO05D004074 3.1e-28 130.2 167 41.9
PSO339G2283 Papaver somniferum HOM05D003562 ORTHO05D004074 3.1e-28 130.2 166 40.4
Psat5g217800 Pisum sativum HOM05D003562 ORTHO05D004074 3.1e-28 130.2 176 38.6
MSTRG.16988 Avicennia marina HOM05D003562 ORTHO05D004074 4.0e-28 129.8 176 39.8
BcaB05g22520 Brassica carinata HOM05D003562 ORTHO05D004074 4.0e-28 129.8 168 40.5
CAN.G1074.6 Capsicum annuum HOM05D003562 ORTHO05D004074 4.0e-28 129.8 167 41.3
Phvul.005G028600 Phaseolus vulgaris HOM05D003562 ORTHO05D004074 4.0e-28 129.8 169 41.4
Duzib114G0768 Durio zibethinus HOM05D003562 ORTHO05D004074 5.2e-28 129.4 177 37.9
Eucgr.G03239 Eucalyptus grandis HOM05D003562 ORTHO05D004074 5.2e-28 129.4 169 40.8
Gorai.011G213800 Gossypium raimondii HOM05D003562 ORTHO05D004074 5.2e-28 129.4 176 39.2
Sp6g21260 Schrenkiella parvula HOM05D003562 ORTHO05D004074 5.2e-28 129.4 168 41.7
Ah.04g155210 Amaranthus hybridus HOM05D003562 ORTHO05D004074 6.8e-28 129.0 171 41.5
BcaB08g36248 Brassica carinata HOM05D003562 ORTHO05D004074 6.8e-28 129.0 171 39.8
HanXRQChr12g0359541 Helianthus annuus HOM05D003562 ORTHO05D004074 6.8e-28 129.0 176 39.2
SalBow7G2199 Salvia bowleyana HOM05D003562 ORTHO05D004074 6.8e-28 129.0 168 42.9
COL.COLO4_07204 Corchorus olitorius HOM05D003562 ORTHO05D004074 8.9e-28 128.6 176 38.1
ATR0763G113 Amborella trichopoda HOM05D003562 ORTHO05D004074 1.2e-27 128.3 167 37.7
BraA10t43756Z Brassica rapa HOM05D003562 ORTHO05D004074 1.2e-27 128.3 169 41.4
Gohir.D10G190700 Gossypium hirsutum HOM05D003562 ORTHO05D004074 1.5e-27 127.9 176 38.6
Nitab4.5_0010864g0010 Nicotiana tabacum HOM05D003562 ORTHO05D004074 1.5e-27 127.9 164 40.2
TAR636G2742 Trochodendron aralioides HOM05D003562 ORTHO05D004074 1.5e-27 127.9 167 38.3
A10p16750 Brassica napus HOM05D003562 ORTHO05D004074 2.0e-27 127.5 169 41.4
PSO384G3387 Papaver somniferum HOM05D003562 ORTHO05D004074 2.0e-27 127.5 165 40.0
BcaC03g14002 Brassica carinata HOM05D003562 ORTHO05D004074 2.6e-27 127.1 169 39.6
BolC2t07341H Brassica oleracea HOM05D003562 ORTHO05D004074 2.6e-27 127.1 169 39.6
TAR636G0244 Trochodendron aralioides HOM05D003562 ORTHO05D004074 2.6e-27 127.1 167 37.7
Migut.N01839 Erythranthe guttata HOM05D003562 ORTHO05D004074 3.4e-27 126.7 174 41.4
BcaC04g19758 Brassica carinata HOM05D003562 ORTHO05D004074 4.4e-27 126.3 169 40.2
C09p51940 Brassica napus HOM05D003562 ORTHO05D004074 4.4e-27 126.3 169 40.2
BolC9t58057H Brassica oleracea HOM05D003562 ORTHO05D004074 4.4e-27 126.3 169 40.2
Sc10g0004400 Simmondsia chinensis HOM05D003562 ORTHO05D004074 4.4e-27 126.3 170 41.2
DCAR_022850 Daucus carota HOM05D003562 ORTHO05D004074 5.8e-27 125.9 169 41.4
TAR636G1695 Trochodendron aralioides HOM05D003562 ORTHO05D004074 5.8e-27 125.9 167 38.3
HPP92_000641 Vanilla planifolia HOM05D003562 ORTHO05D004074 7.5e-27 125.6 177 37.9
A02p07060 Brassica napus HOM05D003562 ORTHO05D004074 1.7e-26 124.4 169 39.6
BraA02t05786Z Brassica rapa HOM05D003562 ORTHO05D004074 1.7e-26 124.4 169 39.6
Thhalv10014282m.g Eutrema salsugineum HOM05D003562 ORTHO05D004074 1.7e-26 124.4 168 39.9
Gohir.D10G190150 Gossypium hirsutum HOM05D003562 ORTHO05D004074 1.7e-26 124.4 176 38.1
Gohir.D10G190200 Gossypium hirsutum HOM05D003562 ORTHO05D004074 1.7e-26 124.4 176 38.1
TAR636G1892 Trochodendron aralioides HOM05D003562 ORTHO05D004074 3.7e-26 123.2 167 36.5
Ah.04g155220 Amaranthus hybridus HOM05D003562 ORTHO05D004074 4.9e-26 122.9 171 40.4
THA.LOC104807160 Tarenaya hassleriana HOM05D003562 ORTHO05D004074 4.9e-26 122.9 172 39.0
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 8.3e-26 122.1 167 38.9
Peaxi162Scf00128g00115 Petunia axillaris HOM05D003562 ORTHO05D004074 1.1e-25 121.7 157 40.1
AagrBONN_evm.TU.Sc2ySwM_362.1627 Anthoceros agrestis HOM05D003562 ORTHO05D004074 1.9e-25 120.9 169 40.2
Oeu015695.4 Olea europaea HOM05D003562 ORTHO05D004074 2.4e-25 120.6 124 48.4
ECA233G2618 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.2e-25 120.2 156 41.0
FAN04G2150 Fragaria x ananassa HOM05D003562 ORTHO05D004074 9.2e-25 118.6 160 40.6
unitig_26.g9509 Utricularia gibba HOM05D003562 ORTHO05D004074 9.2e-25 118.6 171 38.6
AT5G59560 Arabidopsis thaliana HOM05D003562 ORTHO05D004074 1.6e-24 117.9 172 37.2
CARHR273020 Cardamine hirsuta HOM05D003562 ORTHO05D004074 1.6e-24 117.9 170 37.1
Solyc11g005260.2 Solanum lycopersicum HOM05D003562 ORTHO05D004074 1.6e-24 117.9 186 34.9
Sopen11g001270 Solanum pennellii HOM05D003562 ORTHO05D004074 1.6e-24 117.9 186 34.9
AL8G36050 Arabidopsis lyrata HOM05D003562 ORTHO05D004074 2.7e-24 117.1 170 38.2
Ciclev10029023m.g Citrus clementina HOM05D003562 ORTHO05D004074 7.8e-24 115.5 167 38.9
Actinidia06246 Actinidia chinensis HOM05D003562 ORTHO05D004074 1.0e-23 115.2 117 47.9
Carub.0008s2023 Capsella rubella HOM05D003562 ORTHO05D004074 3.0e-23 113.6 169 36.1
AUR62037195 Chenopodium quinoa HOM05D003562 ORTHO05D004074 1.1e-22 111.7 170 35.9
Gohir.A10G183700 Gossypium hirsutum HOM05D003562 ORTHO05D004074 4.3e-22 109.8 117 45.3
HPP92_000706 Vanilla planifolia HOM05D003562 ORTHO05D004074 5.6e-22 109.4 115 44.3
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 3.6e-21 106.7 177 32.8
Actinidia10167 Actinidia chinensis HOM05D003562 ORTHO05D004074 1.1e-20 105.1 112 44.6
CANSAT11G2219 Cannabis sativa HOM05D003562 ORTHO05D004074 2.4e-20 104.0 168 38.7
CSS0043492 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 3.1e-20 103.6 149 38.9
BcaB07g34157 Brassica carinata HOM05D003562 ORTHO05D004074 4.0e-20 103.2 173 36.4
PGSC0003DMG400006036 Solanum tuberosum HOM05D003562 ORTHO05D004074 1.2e-19 101.7 298 37.2
Rhsim08G0039700 Rhododendron simsii HOM05D000884 ORTHO05D002127 3.4e-19 100.1 171 32.2
Dinv02658 Davidia involucrata HOM05D003562 ORTHO05D004074 2.9e-18 97.1 130 36.2
Os05g0118000 Oryza sativa ssp. japonica HOM05D003562 ORTHO05D004074 2.9e-18 97.1 177 33.3
unitig_747.g21707 Utricularia gibba HOM05D003562 ORTHO05D004074 3.8e-18 96.7 169 31.4
TAR636G1190 Trochodendron aralioides HOM05D003562 ORTHO05D004074 1.4e-17 94.7 137 34.3
vmacro18374 Vaccinium macrocarpon HOM05D000884 ORTHO05D002127 1.4e-17 94.7 176 31.2
Zm00001eb188200 Zea mays HOM05D003562 ORTHO05D004074 1.4e-17 94.7 164 33.5
ECA247G0148 Erigeron canadensis HOM05D003562 ORTHO05D004074 1.9e-17 94.4 97 46.4
CANSAT11G2347 Cannabis sativa HOM05D003562 ORTHO05D004074 2.4e-17 94.0 168 36.3
Sopen11g001180 Solanum pennellii HOM05D003562 ORTHO05D004074 2.4e-17 94.0 172 31.4
CANSAT01G2732 Cannabis sativa HOM05D003562 ORTHO05D004074 3.2e-17 93.6 175 34.9
Nitab4.5_0004377g0020 Nicotiana tabacum HOM05D003562 ORTHO05D004074 4.2e-17 93.2 168 33.9
CDE01G0515 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 7.1e-17 92.4 162 34.0
Solyc11g005180.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 7.1e-17 92.4 172 31.4
PGSC0003DMG400039163 Solanum tuberosum HOM05D003562 ORTHO05D004074 4.6e-16 89.7 169 34.3
Nitab4.5_0002396g0040 Nicotiana tabacum HOM05D003562 ORTHO05D004074 1.0e-15 88.6 163 33.1
Thecc.07G145100 Theobroma cacao HOM05D003562 ORTHO05D004074 3.9e-15 86.7 159 30.8
SEGI_35747 Sequoiadendron giganteum HOM05D003562 ORTHO05D004074 8.7e-15 85.5 117 35.9
Nitab4.5_0002396g0050 Nicotiana tabacum HOM05D003562 ORTHO05D004074 1.1e-14 85.1 161 31.7
CAN.G557.9 Capsicum annuum HOM05D003562 ORTHO05D004074 1.5e-14 84.7 171 32.7
PGSC0003DMG400006062 Solanum tuberosum HOM05D003562 ORTHO05D004074 1.9e-14 84.3 172 30.8
CAN.G557.10 Capsicum annuum HOM05D003562 ORTHO05D004074 4.3e-14 83.2 168 31.5
Peaxi162Scf00025g02824 Petunia axillaris HOM05D003562 ORTHO05D004074 7.3e-14 82.4 168 30.4
Ah.10g030580 Amaranthus hybridus HOM05D003562 ORTHO05D004074 3.6e-13 80.1 171 33.3
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 4.7e-13 79.7 122 36.1
QL06p011807 Quercus lobata HOM05D003562 ORTHO05D004074 8.1e-13 79.0 111 36.9
Cre10.g423700 Chlamydomonas reinhardtii HOM05D003562 ORTHO05D004074 1.1e-12 78.6 163 31.9
MBI18_g45417_MAGBIO Magnolia biondii HOM05D003562 ORTHO05D004074 1.4e-12 78.2 160 31.2
CDE01G0328 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 1.8e-12 77.8 162 33.3
HanXRQChr06g0173441 Helianthus annuus HOM05D003562 ORTHO05D004074 1.8e-12 77.8 146 32.2
Peaxi162Scf00125g00231 Petunia axillaris HOM05D003562 ORTHO05D004074 1.8e-12 77.8 172 31.4
BolC2t11811H Brassica oleracea HOM05D003562 ORTHO05D004074 3.1e-12 77.0 85 43.5
Sopen11g001240 Solanum pennellii HOM05D003562 ORTHO05D004074 4.0e-12 76.6 170 30.6
Solyc11g005230.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 9.0e-12 75.5 170 30.0
Nitab4.5_0004377g0040 Nicotiana tabacum HOM05D003562 ORTHO05D004074 1.5e-11 74.7 171 29.8
CANSAT11G1241 Cannabis sativa HOM05D003562 ORTHO05D004074 2.0e-11 74.3 160 33.8
BolC2t11816H Brassica oleracea HOM05D003562 ORTHO05D004074 2.6e-11 73.9 84 42.9
Lsat_1_v5_gn_3_4941 Lactuca sativa HOM05D003562 ORTHO05D004074 2.6e-11 73.9 83 43.4
PRCOL_00000242 Prasinoderma coloniale HOM05D003562 ORTHO05D004074 3.4e-11 73.6 145 34.5
PGSC0003DMG400006063 Solanum tuberosum HOM05D003562 ORTHO05D004074 4.4e-11 73.2 170 30.6
Solyc06g005930.3 Solanum lycopersicum HOM05D003562 ORTHO05D004074 7.6e-11 72.4 166 27.7
Thecc.07G145200 Theobroma cacao HOM05D003562 ORTHO05D004074 7.6e-11 72.4 108 34.3
PGSC0003DMG400009785 Solanum tuberosum HOM05D003562 ORTHO05D004074 1.7e-10 71.2 71 49.3
PGSC0003DMG400042505 Solanum tuberosum HOM05D003562 ORTHO05D004074 8.4e-10 68.9 163 29.4
Lsat_1_v5_gn_4_44700 Lactuca sativa HOM05D003562 ORTHO05D004074 4.2e-09 66.6 77 41.6
Solyc11g005240.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 4.2e-09 66.6 169 29.0
Sopen11g001250 Solanum pennellii HOM05D003562 ORTHO05D004074 4.2e-09 66.6 169 29.0
BraA02t08793Z Brassica rapa HOM05D003562 ORTHO05D004074 1.6e-08 64.7 82 42.7
Nitab4.5_0002396g0020 Nicotiana tabacum HOM05D003562 ORTHO05D004074 6.0e-08 62.8 80 36.2
MCO01G099 Micromonas commoda HOM05D003562 ORTHO05D004074 1.0e-07 62.0 199 25.6
MCO01G583 Micromonas commoda HOM05D003562 ORTHO05D004074 1.0e-07 62.0 199 25.6
CARHR266600 Cardamine hirsuta HOM05D003562 ORTHO05D004074 3.0e-07 60.5 75 40.0
AUR62026879 Chenopodium quinoa HOM05D003562 ORTHO05D004074 3.9e-07 60.1 64 43.8


User provided reference genes

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