Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G002300 Manihot esculenta HOM05D007105 ORTHO05D009304 1.4e-181 639.4 310 100.0
Dinv37443 Davidia involucrata HOM05D007105 ORTHO05D009304 2.4e-133 479.2 343 68.5
GSVIVG01036908001 Vitis vinifera HOM05D007105 ORTHO05D004932 2.1e-132 476.1 342 68.1
Potri.003G106300 Populus trichocarpa HOM05D007105 ORTHO05D009304 2.7e-132 475.7 348 68.4
Ciclev10004016m.g Citrus clementina HOM05D007105 ORTHO05D004932 7.8e-132 474.2 341 68.0
CiPaw.11G077800 Carya illinoinensis HOM05D007105 ORTHO05D009304 1.9e-130 469.5 344 65.4
Hma1.2p1_0294F.1_g116480 Hydrangea macrophylla HOM05D007105 ORTHO05D009304 2.5e-130 469.2 342 67.3
MD06G1012100 Malus domestica HOM05D007105 ORTHO05D009304 6.2e-129 464.5 343 65.6
Atru.chr6.2143 Acer truncatum HOM05D007105 ORTHO05D009304 8.1e-129 464.2 357 66.1
TAR375G0424 Trochodendron aralioides HOM05D007105 ORTHO05D009304 3.1e-128 462.2 342 65.5
Cfa012630 Carpinus fangiana HOM05D007105 ORTHO05D009304 6.9e-128 461.1 342 66.1
FAN13G0641 Fragaria x ananassa HOM05D007105 ORTHO05D009304 1.5e-127 459.9 310 70.0
COL.COLO4_16732 Corchorus olitorius HOM05D007105 ORTHO05D009304 3.4e-127 458.8 341 65.4
Prupe.5G014800 Prunus persica HOM05D007105 ORTHO05D009304 1.7e-126 456.4 346 64.5
RcHm_v2.0_Chr7g0215051 Rosa chinensis HOM05D007105 ORTHO05D009304 1.6e-124 449.9 345 64.1
Rhsim11G0040200 Rhododendron simsii HOM05D007105 ORTHO05D009304 2.7e-124 449.1 344 63.7
FvH4_5g24670 Fragaria vesca HOM05D007105 ORTHO05D009304 4.6e-124 448.4 344 63.7
FAN13G0608 Fragaria x ananassa HOM05D007105 ORTHO05D009304 6.0e-124 448.0 344 63.7
FAN18G4245 Fragaria x ananassa HOM05D007105 ORTHO05D009304 6.0e-124 448.0 344 63.7
Nn1g09319 Nelumbo nucifera HOM05D007105 ORTHO05D009304 7.9e-124 447.6 344 63.7
vmacro00108 Vaccinium macrocarpon HOM05D007105 ORTHO05D009304 7.9e-124 447.6 344 63.1
TWI60G0782 Tripterygium wilfordii HOM05D007105 ORTHO05D009304 1.0e-123 447.2 343 63.6
Thecc.03G321700 Theobroma cacao HOM05D007105 ORTHO05D009304 3.0e-123 445.7 341 64.5
Gorai.008G218400 Gossypium raimondii HOM05D007105 ORTHO05D009304 2.5e-122 442.6 341 65.1
Psat2g144520 Pisum sativum HOM05D007105 ORTHO05D009304 2.5e-122 442.6 346 65.3
PGR042G1426 Punica granatum HOM05D007105 ORTHO05D009304 4.3e-122 441.8 345 64.1
FAN04G2788 Fragaria x ananassa HOM05D007105 ORTHO05D009304 7.4e-122 441.0 344 63.4
TPR.G28495 Trifolium pratense HOM05D007105 ORTHO05D009304 1.6e-121 439.9 346 64.5
Medtr5g026030 Medicago truncatula HOM05D007105 ORTHO05D009304 2.1e-121 439.5 346 63.9
Oeu031946.1 Olea europaea HOM05D007105 ORTHO05D009304 2.8e-121 439.1 343 63.0
QL12p002830 Quercus lobata HOM05D007105 ORTHO05D009304 7.6e-119 431.0 327 64.5
CSS0044734 Camellia sinensis var. sinensis HOM05D007105 ORTHO05D009304 1.3e-118 430.3 325 65.5
CSS0008904 Camellia sinensis var. sinensis HOM05D007105 ORTHO05D009304 1.9e-117 426.4 325 65.2
Lalb_Chr05g0215271 Lupinus albus HOM05D007105 ORTHO05D009304 1.9e-117 426.4 344 62.8
PSO063G0027 Papaver somniferum HOM05D007105 ORTHO05D009304 1.9e-117 426.4 337 62.0
Migut.A00485 Erythranthe guttata HOM05D007105 ORTHO05D009304 3.2e-117 425.6 342 59.6
Lj2g0014172 Lotus japonicus HOM05D007105 ORTHO05D009304 4.2e-117 425.2 345 62.6
MSTRG.11847 Avicennia marina HOM05D007105 ORTHO05D009304 7.1e-117 424.5 345 60.9
PGSC0003DMG400029377 Solanum tuberosum HOM05D007105 ORTHO05D009304 9.3e-117 424.1 343 61.2
Oeu047792.1 Olea europaea HOM05D007105 ORTHO05D009304 1.6e-116 423.3 339 61.4
Sed0004381 Sechium edule HOM05D007105 ORTHO05D009304 2.7e-116 422.5 348 60.9
Solyc12g096230.2 Solanum lycopersicum HOM05D007105 ORTHO05D009304 3.5e-116 422.2 342 60.8
Sopen12g032090 Solanum pennellii HOM05D007105 ORTHO05D009304 3.5e-116 422.2 343 60.9
MELO3C010538.2 Cucumis melo HOM05D007105 ORTHO05D009304 1.8e-115 419.9 344 61.3
CANSAT35G0139 Cannabis sativa HOM05D007105 ORTHO05D009304 1.1e-114 417.2 337 62.0
CsaV3_4G037900 Cucumis sativus L. HOM05D007105 ORTHO05D009304 1.5e-114 416.8 346 60.1
ECA233G0981 Erigeron canadensis HOM05D007105 ORTHO05D009304 1.5e-114 416.8 344 61.9
FAN08G0498 Fragaria x ananassa HOM05D007105 ORTHO05D009304 1.9e-114 416.4 340 60.9
SalBow4G3195 Salvia bowleyana HOM05D007105 ORTHO05D009304 2.8e-113 412.5 370 55.1
THA.LOC104798532 Tarenaya hassleriana HOM05D007105 ORTHO05D009304 2.8e-113 412.5 350 61.7
Lsat_1_v5_gn_6_17400 Lactuca sativa HOM05D007105 ORTHO05D009304 1.1e-112 410.6 342 59.9
SGA_v2.0_scaffold89G27361 Striga asiatica HOM05D007105 ORTHO05D009304 1.4e-112 410.2 343 58.6
Hund11072 Selenicereus undatus HOM05D007105 ORTHO05D009304 3.1e-112 409.1 351 57.8
Duzib068G0877 Durio zibethinus HOM05D007105 ORTHO05D009304 1.2e-111 407.1 325 63.4
BcaC07g37753 Brassica carinata HOM05D007105 ORTHO05D009304 3.4e-111 405.6 344 61.3
BolC8t48138H Brassica oleracea HOM05D007105 ORTHO05D009304 3.4e-111 405.6 344 61.3
Aa31LG2G14440 Aethionema arabicum HOM05D007105 ORTHO05D009304 1.0e-110 404.1 347 61.1
Sc22g0002220 Simmondsia chinensis HOM05D007105 ORTHO05D009304 1.3e-110 403.7 344 57.8
CARHR286980 Cardamine hirsuta HOM05D007105 ORTHO05D009304 1.7e-110 403.3 347 59.7
arahy.Tifrunner.gnm1.ann1.C0VXQN Arachis hypogaea HOM05D007105 ORTHO05D009304 2.2e-110 402.9 326 62.6
arahy.Tifrunner.gnm1.ann1.E4PV4B Arachis hypogaea HOM05D007105 ORTHO05D009304 2.2e-110 402.9 326 62.6
Thhalv10006757m.g Eutrema salsugineum HOM05D007105 ORTHO05D004932 2.9e-110 402.5 345 60.3
Carub.0001s2995 Capsella rubella HOM05D007105 ORTHO05D009304 8.4e-110 401.0 347 61.4
Actinidia01236 Actinidia chinensis HOM05D007105 ORTHO05D004932 4.2e-109 398.7 300 64.0
BcaB04g18148 Brassica carinata HOM05D007105 ORTHO05D009304 1.2e-108 397.1 345 60.0
AUR62010501 Chenopodium quinoa HOM05D007105 ORTHO05D009304 1.2e-108 397.1 353 58.1
BraA08t33052Z Brassica rapa HOM05D007105 ORTHO05D009304 1.6e-108 396.7 347 59.9
AL1G49460 Arabidopsis lyrata HOM05D007105 ORTHO05D009304 7.9e-108 394.4 347 59.1
Sp1g27320 Schrenkiella parvula HOM05D007105 ORTHO05D009304 1.0e-107 394.0 347 59.1
Peaxi162Scf00876g00218 Petunia axillaris HOM05D007105 ORTHO05D009304 1.3e-107 393.7 325 61.2
AT1G31600 Arabidopsis thaliana HOM05D007105 ORTHO05D009304 3.9e-107 392.1 347 60.5
Phvul.002G123600 Phaseolus vulgaris HOM05D007105 ORTHO05D009304 3.9e-107 392.1 304 64.1
ClCG11G016210 Citrullus lanatus HOM05D007105 ORTHO05D009304 8.7e-107 391.0 326 60.4
DCAR_000711 Daucus carota HOM05D007105 ORTHO05D009304 1.9e-106 389.8 318 60.4
Sabra03G0073100 Salix brachista HOM05D007105 ORTHO05D009304 2.2e-105 386.3 356 57.6
unitig_748.g8154 Utricularia gibba HOM05D007105 ORTHO05D009304 1.1e-104 384.0 342 56.1
Nitab4.5_0006955g0010 Nicotiana tabacum HOM05D007105 ORTHO05D009304 1.8e-104 383.3 324 59.9
Nitab4.5_0001159g0020 Nicotiana tabacum HOM05D007105 ORTHO05D009304 3.1e-104 382.5 318 59.4
Aqoxy3G04039 Aquilegia oxysepala HOM05D007105 ORTHO05D009304 4.1e-104 382.1 331 60.1
Glyma.09G217100 Glycine max HOM05D007105 ORTHO05D009304 6.9e-104 381.3 344 58.7
VMungo1215G3143 Vigna mungo HOM05D007105 ORTHO05D009304 6.5e-102 374.8 304 62.2
A08p10520 Brassica napus HOM05D007105 ORTHO05D006179 8.5e-102 374.4 337 59.1
CDE12G0320 Ceratophyllum demersum HOM05D007105 ORTHO05D009304 1.4e-101 373.6 345 54.5
Lj7A630G46 Lonicera japonica HOM05D007105 ORTHO05D009304 2.5e-101 372.9 306 60.5
Gohir.D12G203600 Gossypium hirsutum HOM05D007105 ORTHO05D009304 3.2e-101 372.5 303 62.7
Gohir.A12G200800 Gossypium hirsutum HOM05D007105 ORTHO05D009304 4.2e-101 372.1 303 63.0
Cpa.g.sc24.39 Carica papaya HOM05D007105 ORTHO05D009304 6.1e-100 368.2 310 63.2
Haze_08036 Corylus avellana HOM05D007105 ORTHO05D009304 1.3e-99 367.1 303 61.7
Ca_25062_v3 Cicer arietinum L. HOM05D007105 ORTHO05D009304 2.4e-96 356.3 310 58.7
Os04g0602700 Oryza sativa ssp. japonica HOM05D007105 ORTHO05D009304 3.4e-95 352.4 343 53.4
Zm00001eb071740 Zea mays HOM05D007105 ORTHO05D009304 3.4e-95 352.4 325 54.5
Mapoly0189s0001 Marchantia polymorpha HOM05D005261 ORTHO05D006180 4.2e-93 345.5 340 51.5
HPP92_014403 Vanilla planifolia HOM05D007105 ORTHO05D009304 6.1e-92 341.7 323 53.9
EL10Ac5g12602 Beta vulgaris HOM05D007105 ORTHO05D009304 3.9e-91 339.0 367 51.0
TPR.G38782 Trifolium pratense HOM05D007105 ORTHO05D009304 5.1e-91 338.6 294 60.2
Ah.02g116320 Amaranthus hybridus HOM05D007105 ORTHO05D009304 5.9e-87 325.1 320 53.8
ATR0568G201 Amborella trichopoda HOM05D007105 ORTHO05D009304 2.5e-85 319.7 300 53.7
AUR62017399 Chenopodium quinoa HOM05D007105 ORTHO05D009304 5.5e-85 318.5 288 57.3
CAN.G947.23 Capsicum annuum HOM05D007105 ORTHO05D009304 2.7e-84 316.2 210 70.0
Pp3c8_16200 Physcomitrium patens HOM05D005261 ORTHO05D006180 3.0e-83 312.8 348 48.3
MBI04_g30794_MAGBIO Magnolia biondii HOM05D007105 ORTHO05D009304 4.1e-80 302.4 207 70.0
SMO361G0725 Selaginella moellendorffii HOM05D007105 ORTHO05D009304 2.3e-75 286.6 323 48.0
HanXRQChr07g0198471 Helianthus annuus HOM05D007105 ORTHO05D009304 2.6e-74 283.1 210 62.9
AagrBONN_evm.TU.Sc2ySwM_344.1706 Anthoceros agrestis HOM05D007105 ORTHO05D009304 1.6e-68 263.8 306 46.1
SEGI_34316 Sequoiadendron giganteum HOM05D007105 ORTHO05D009304 2.1e-60 236.9 208 58.2
MCO02G439 Micromonas commoda HOM05D007105 ORTHO05D009304 9.8e-58 228.0 351 39.6
TPR.G35893 Trifolium pratense HOM05D007105 ORTHO05D009304 2.2e-57 226.9 168 67.9
Eucgr.E01168 Eucalyptus grandis HOM05D000346 ORTHO05D004932 4.0e-51 206.1 211 52.1
Cre04.g224002 Chlamydomonas reinhardtii HOM05D005261 ORTHO05D006180 1.3e-38 164.5 198 43.9
PRCOL_00005291 Prasinoderma coloniale HOM05D005261 ORTHO05D006180 5.1e-30 136.0 264 33.3
CBR_g37166 Chara braunii HOM05D006810 ORTHO05D008501 2.4e-24 117.1 192 39.1
CBR_g58096 Chara braunii HOM05D007105 ORTHO05D009304 1.5e-21 107.8 230 32.2
TPR.G29264 Trifolium pratense HOM05D007105 ORTHO05D009304 4.3e-21 106.3 59 79.7
HanXRQChr14g0444821 Helianthus annuus HOM05D007105 ORTHO05D009304 1.6e-20 104.4 106 50.0
Eucgr.H01159 Eucalyptus grandis HOM05D006806 ORTHO05D008448 4.0e-11 73.2 201 30.8
Ciclev10021759m.g Citrus clementina HOM05D006806 ORTHO05D008448 1.7e-09 67.8 124 31.5
Glyma.01G151951 Glycine max HOM05D007105 ORTHO05D009304 2.2e-09 67.4 100 42.0
Hma1.2p1_0209F.1_g088560 Hydrangea macrophylla HOM05D006806 ORTHO05D008448 1.1e-08 65.1 179 26.8
PGR119G0665 Punica granatum HOM05D006806 ORTHO05D008448 1.4e-08 64.7 126 33.3
PGR119G2452 Punica granatum HOM05D006806 ORTHO05D008448 1.4e-08 64.7 126 33.3
Atru.chr5.1178 Acer truncatum HOM05D006806 ORTHO05D008448 1.9e-08 64.3 181 26.0
Hma1.2p1_0209F.1_g088570 Hydrangea macrophylla HOM05D006806 ORTHO05D008448 1.9e-08 64.3 175 26.9
Lsat_1_v5_gn_9_1100 Lactuca sativa HOM05D006806 ORTHO05D008448 1.9e-08 64.3 178 28.1
ClCG10G010640 Citrullus lanatus HOM05D006806 ORTHO05D008448 3.2e-08 63.5 124 31.5
MD11G1304900 Malus domestica HOM05D006806 ORTHO05D008448 3.2e-08 63.5 143 33.6
COL.COLO4_23371 Corchorus olitorius HOM05D006806 ORTHO05D008448 4.2e-08 63.2 126 34.1
A09p01940 Brassica napus HOM05D006806 ORTHO05D008448 5.4e-08 62.8 171 31.0
Cpa.g.sc9.212 Carica papaya HOM05D006806 ORTHO05D008448 7.1e-08 62.4 219 26.9
MBI19_g29223_MAGBIO Magnolia biondii HOM05D006806 ORTHO05D008448 7.1e-08 62.4 124 32.3
HPP92_014223 Vanilla planifolia HOM05D006806 ORTHO05D008448 7.1e-08 62.4 125 36.8
arahy.Tifrunner.gnm1.ann1.IELT58 Arachis hypogaea HOM05D006806 ORTHO05D008448 9.3e-08 62.0 195 30.3
BcaNung04058 Brassica carinata HOM05D006806 ORTHO05D008448 9.3e-08 62.0 171 31.6
BolC9t53133H Brassica oleracea HOM05D006806 ORTHO05D008448 9.3e-08 62.0 171 31.6
Duzib133G0508 Durio zibethinus HOM05D006806 ORTHO05D008448 9.3e-08 62.0 125 35.2
FvH4_2g25440 Fragaria vesca HOM05D006806 ORTHO05D008448 9.3e-08 62.0 191 29.8
Sp6g02400 Schrenkiella parvula HOM05D006806 ORTHO05D008448 9.3e-08 62.0 170 28.8
arahy.Tifrunner.gnm1.ann1.68R93N Arachis hypogaea HOM05D006806 ORTHO05D008448 1.2e-07 61.6 195 30.3
C09p02030 Brassica napus HOM05D006806 ORTHO05D008448 1.2e-07 61.6 171 31.6
QL12p027175 Quercus lobata HOM05D006806 ORTHO05D008448 1.2e-07 61.6 163 31.3
Zm00001eb115680 Zea mays HOM05D006806 ORTHO05D008448 1.2e-07 61.6 124 31.5
ATR0796G300 Amborella trichopoda HOM05D006806 ORTHO05D008448 1.6e-07 61.2 127 32.3
FAN24G3039 Fragaria x ananassa HOM05D006806 ORTHO05D008448 1.6e-07 61.2 192 29.2
TWI59G0641 Tripterygium wilfordii HOM05D006806 ORTHO05D008448 1.6e-07 61.2 132 32.6
GSVIVG01027979001 Vitis vinifera HOM05D006806 ORTHO05D008448 1.6e-07 61.2 199 28.1
BraA09t35844Z Brassica rapa HOM05D006806 ORTHO05D008448 2.1e-07 60.8 171 31.6
MELO3C017969.2 Cucumis melo HOM05D006806 ORTHO05D008448 2.1e-07 60.8 124 32.3
Thhalv10028943m.g Eutrema salsugineum HOM05D006806 ORTHO05D008448 2.1e-07 60.8 170 28.8
Lj1C32T0 Lonicera japonica HOM05D006806 ORTHO05D008448 2.1e-07 60.8 185 29.7
Thecc.01G297500 Theobroma cacao HOM05D006806 ORTHO05D008448 2.1e-07 60.8 126 33.3
Aqoxy5G00723 Aquilegia oxysepala HOM05D006806 ORTHO05D008448 2.7e-07 60.5 203 29.1
AL6G50560 Arabidopsis lyrata HOM05D006806 ORTHO05D008448 2.7e-07 60.5 174 29.9
CARHR250790 Cardamine hirsuta HOM05D006806 ORTHO05D008448 2.7e-07 60.5 172 27.9
ECA247G0015 Erigeron canadensis HOM05D006806 ORTHO05D008448 2.7e-07 60.5 124 33.1
FAN20G0869 Fragaria x ananassa HOM05D006806 ORTHO05D008448 2.7e-07 60.5 132 32.6
Prupe.8G258600 Prunus persica HOM05D006806 ORTHO05D008448 2.7e-07 60.5 146 34.9
THA.LOC104801266 Tarenaya hassleriana HOM05D006806 ORTHO05D008448 3.5e-07 60.1 124 33.1
TAR365G0408 Trochodendron aralioides HOM05D006806 ORTHO05D008448 3.5e-07 60.1 128 31.2
BcaB01g02036 Brassica carinata HOM05D006806 ORTHO05D008448 6.0e-07 59.3 171 30.4
FAN15G1766 Fragaria x ananassa HOM05D006806 ORTHO05D008448 6.0e-07 59.3 132 32.6
FAN27G1603 Fragaria x ananassa HOM05D006806 ORTHO05D008448 6.0e-07 59.3 132 32.6
Carub.0006s3464 Capsella rubella HOM05D006806 ORTHO05D008448 7.9e-07 58.9 174 29.3
DCAR_002818 Daucus carota HOM05D006806 ORTHO05D008448 7.9e-07 58.9 124 31.5
HanXRQChr15g0465711 Helianthus annuus HOM05D006806 ORTHO05D008448 7.9e-07 58.9 165 29.7
Rhsim13G0012300 Rhododendron simsii HOM05D006806 ORTHO05D008448 7.9e-07 58.9 238 25.2
AT4G02485 Arabidopsis thaliana HOM05D006806 ORTHO05D008448 1.0e-06 58.5 171 27.5
RcHm_v2.0_Chr6g0293671 Rosa chinensis HOM05D006806 ORTHO05D008448 1.0e-06 58.5 132 32.6
CANSAT25G1656 Cannabis sativa HOM05D006806 ORTHO05D008448 1.8e-06 57.8 125 29.6
Hund05413 Selenicereus undatus HOM05D006806 ORTHO05D008448 1.8e-06 57.8 126 31.0
CSS0020680 Camellia sinensis var. sinensis HOM05D006806 ORTHO05D008448 3.0e-06 57.0 201 24.9
CANSAT25G0048 Cannabis sativa HOM05D006806 ORTHO05D008448 3.0e-06 57.0 128 32.8
CiPaw.07G106700 Carya illinoinensis HOM05D006806 ORTHO05D008448 3.9e-06 56.6 97 36.1
AUR62008620 Chenopodium quinoa HOM05D006806 ORTHO05D008448 8.7e-06 55.5 124 30.6
Manes.05G063800 Manihot esculenta HOM05D006806 ORTHO05D008448 8.7e-06 55.5 124 30.6


User provided reference genes

Program Settings