Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 0.0e+00 1090.1 565 100.0
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 1.1e-264 916.4 570 84.0
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 2.4e-264 915.2 569 84.0
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 6.0e-263 910.6 572 84.3
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 1.7e-262 909.1 568 83.8
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 8.6e-262 906.7 569 84.0
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.1e-261 906.4 570 82.5
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 9.5e-261 903.3 570 82.5
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 8.1e-260 900.2 570 82.3
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 1.8e-259 899.0 571 83.4
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 3.4e-258 894.8 568 82.0
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 4.4e-258 894.4 571 81.8
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 2.2e-257 892.1 589 81.0
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 2.1e-255 885.6 570 81.4
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 2.7e-255 885.2 576 81.2
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 1.3e-254 882.9 549 84.2
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 2.3e-254 882.1 583 81.0
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 2.3e-254 882.1 569 82.4
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 3.0e-254 881.7 571 81.4
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 5.1e-254 880.9 583 80.8
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 3.3e-253 878.2 574 81.4
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 3.3e-253 878.2 574 80.1
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 4.3e-253 877.9 573 80.5
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 5.6e-253 877.5 574 81.5
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 7.3e-253 877.1 574 79.6
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 7.3e-253 877.1 569 81.4
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 9.6e-253 876.7 571 81.3
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 2.8e-252 875.2 572 79.2
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 1.8e-251 872.5 569 80.0
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 5.2e-251 870.9 573 79.9
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 6.8e-251 870.5 570 80.9
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.2e-250 869.8 590 78.5
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.5e-250 869.4 575 80.2
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 2.0e-250 869.0 570 80.9
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 2.6e-250 868.6 577 80.1
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 9.9e-250 866.7 569 80.7
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 1.7e-249 865.9 572 80.6
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 3.8e-249 864.8 570 78.9
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 4.9e-249 864.4 572 79.4
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 4.2e-248 861.3 569 80.3
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 2.1e-247 859.0 571 79.5
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 4.6e-247 857.8 571 77.8
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 3.9e-246 854.7 573 78.2
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 1.6e-244 849.4 571 79.5
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 2.6e-242 842.0 575 78.6
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 2.2e-241 839.0 573 79.2
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 3.8e-241 838.2 566 78.4
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 9.3e-240 833.6 575 78.6
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 1.6e-239 832.8 578 77.5
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.6e-239 832.8 566 77.9
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 2.7e-239 832.0 571 75.3
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 8.7e-238 827.0 574 76.0
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 3.3e-237 825.1 566 77.7
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 3.6e-236 821.6 674 69.0
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 6.2e-236 820.8 567 77.4
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 1.1e-235 820.1 566 79.0
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 1.4e-235 819.7 572 77.4
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 3.1e-235 818.5 571 74.1
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 2.6e-234 815.5 568 75.2
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 2.6e-234 815.5 567 76.9
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 7.6e-234 813.9 573 73.8
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 9.9e-234 813.5 573 73.8
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 9.9e-234 813.5 567 76.7
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.9e-233 812.0 573 73.8
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 4.9e-233 811.2 570 75.1
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.4e-232 808.9 530 80.4
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 3.2e-232 808.5 573 73.3
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 7.1e-232 807.4 587 74.3
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 7.9e-231 803.9 573 76.4
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 2.3e-230 802.4 583 76.5
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.5e-229 798.9 600 70.5
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 6.9e-227 790.8 633 68.4
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 1.2e-226 790.0 569 72.6
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 1.5e-226 789.6 569 74.2
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 5.8e-226 787.7 568 72.4
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 6.5e-225 784.3 589 69.6
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 6.5e-225 784.3 569 74.2
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 1.1e-224 783.5 558 75.6
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 1.3e-222 776.5 571 71.6
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 2.3e-222 775.8 518 80.5
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 3.3e-221 771.9 563 73.5
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 3.3e-221 771.9 566 73.0
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 3.7e-220 768.5 575 70.6
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 6.3e-220 767.7 566 73.1
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 8.2e-220 767.3 573 72.8
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 2.4e-219 765.8 570 74.6
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 1.5e-218 763.1 570 72.5
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 4.5e-218 761.5 551 74.6
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 1.7e-217 759.6 573 70.9
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 1.7e-217 759.6 573 70.9
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 1.7e-217 759.6 573 70.9
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 3.8e-217 758.4 570 70.2
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 4.2e-216 755.0 573 70.3
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 7.2e-216 754.2 573 70.3
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 4.6e-215 751.5 580 71.4
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 1.3e-214 750.0 568 69.0
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 1.3e-214 750.0 736 59.4
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 8.2e-212 740.7 581 70.6
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 2.4e-211 739.2 554 71.8
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 3.1e-211 738.8 569 69.1
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 2.5e-208 729.2 570 71.6
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 5.5e-208 728.0 503 76.3
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 6.7e-206 721.1 508 75.6
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 2.5e-200 702.6 573 68.6
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 4.5e-194 681.8 571 68.1
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 7.2e-192 674.5 569 65.6
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 3.5e-186 655.6 490 72.2
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 7.2e-184 647.9 420 81.0
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 2.2e-172 609.8 594 60.3
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 2.8e-151 539.7 383 75.7
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 4.0e-142 509.2 515 56.9
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 4.0e-142 509.2 515 56.9
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 4.0e-142 509.2 515 56.9
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 1.2e-138 497.7 579 52.7
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 2.9e-132 476.5 581 52.0
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 6.2e-127 458.8 473 56.4
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 2.4e-126 456.8 263 85.6
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 2.7e-122 443.4 329 72.0
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 2.0e-88 330.9 261 69.3
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 1.9e-83 314.3 243 71.2
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 3.6e-82 310.1 550 41.8
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 1.7e-79 301.2 352 52.0
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 2.6e-77 293.9 163 90.2
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 7.7e-77 292.4 332 54.8
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 1.7e-76 291.2 182 81.3
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 7.2e-75 285.8 164 88.4
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 5.2e-73 279.6 166 83.7
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 2.7e-69 267.3 194 73.7
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 8.5e-68 262.3 281 54.1
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 3.4e-64 250.4 412 42.5
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 4.2e-59 233.4 169 80.5
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 2.2e-55 221.1 134 81.3
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.6e-50 204.9 413 39.5
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 8.0e-50 202.6 134 74.6
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 1.1e-43 182.2 119 82.4
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 4.3e-43 180.3 176 63.1
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 6.8e-41 172.9 592 29.1
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 2.1e-37 161.4 101 81.2
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 7.3e-35 152.9 145 59.3
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 1.2e-34 152.1 154 59.7
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 1.9e-27 128.3 68 91.2
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 6.2e-26 123.2 160 46.2
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 5.8e-24 116.7 78 74.4
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 1.4e-22 112.1 58 94.8
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 2.3e-20 104.8 95 57.9
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 3.3e-19 100.9 66 78.8
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 5.6e-19 100.1 62 71.0
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 5.6e-19 100.1 182 39.6
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 3.6e-18 97.4 69 73.9
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 9.9e-16 89.4 150 38.7
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 3.8e-15 87.4 68 69.1
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 3.2e-14 84.3 86 51.2
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 4.2e-14 84.0 50 86.0
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 1.1e-11 75.9 87 44.8
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 1.5e-11 75.5 49 81.6
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 5.8e-08 63.5 64 59.4
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 1.3e-07 62.4 35 85.7
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 6.4e-07 60.1 63 49.2
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 2.4e-06 58.2 63 47.6


User provided reference genes

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