Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G125300 Manihot esculenta HOM05D005980 ORTHO05D007618 9.9e-245 849.7 447 100.0
GSVIVG01021555001 Vitis vinifera HOM05D005980 ORTHO05D007618 1.4e-201 706.4 448 79.2
Potri.001G358400 Populus trichocarpa HOM05D005980 ORTHO05D007618 8.2e-199 697.2 449 82.2
Thecc.06G143900 Theobroma cacao HOM05D005980 ORTHO05D007618 1.4e-198 696.4 449 81.5
Nitab4.5_0000869g0050 Nicotiana tabacum HOM05D005980 ORTHO05D007618 2.6e-197 692.2 447 78.1
Dinv32210 Davidia involucrata HOM05D005980 ORTHO05D007618 1.3e-196 689.9 446 78.3
CSS0007144 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 1.7e-196 689.5 451 78.5
CSS0019737 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 2.2e-196 689.1 451 78.0
PGR102G3344 Punica granatum HOM05D005980 ORTHO05D007618 5.0e-196 688.0 464 78.0
Sabra16G0236200 Salix brachista HOM05D005980 ORTHO05D007618 6.5e-196 687.6 449 81.3
Gohir.D05G148400 Gossypium hirsutum HOM05D005980 ORTHO05D007618 5.5e-195 684.5 449 80.6
Nn3g20318 Nelumbo nucifera HOM05D005980 ORTHO05D007618 7.2e-195 684.1 449 78.0
Dinv21517 Davidia involucrata HOM05D005980 ORTHO05D007618 9.4e-195 683.7 446 76.7
FvH4_3g05000 Fragaria vesca HOM05D005980 ORTHO05D007618 2.7e-194 682.2 453 76.2
FAN16G3332 Fragaria x ananassa HOM05D005980 ORTHO05D007618 3.6e-194 681.8 453 76.2
FAN11G3650 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.0e-193 680.2 453 75.9
TAR626G0855 Trochodendron aralioides HOM05D005980 ORTHO05D007618 1.0e-193 680.2 449 78.2
COL.COLO4_31005 Corchorus olitorius HOM05D005980 ORTHO05D007618 1.4e-193 679.9 451 80.0
FAN21G1725 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.8e-193 679.5 453 76.2
Ciclev10014878m.g Citrus clementina HOM05D005980 ORTHO05D007618 3.0e-193 678.7 448 79.2
Solyc02g070390.3 Solanum lycopersicum HOM05D005980 ORTHO05D007618 3.9e-193 678.3 447 76.5
Oeu032723.1 Olea europaea HOM05D005980 ORTHO05D007618 5.2e-193 677.9 450 76.9
Sopen02g019470 Solanum pennellii HOM05D005980 ORTHO05D007618 5.2e-193 677.9 447 76.5
PGSC0003DMG402021097 Solanum tuberosum HOM05D005980 ORTHO05D007618 5.2e-193 677.9 447 76.5
Prupe.4G086000 Prunus persica HOM05D005980 ORTHO05D007618 8.8e-193 677.2 451 76.7
RcHm_v2.0_Chr5g0014971 Rosa chinensis HOM05D005980 ORTHO05D007618 4.4e-192 674.9 451 75.4
MSTRG.16268 Avicennia marina HOM05D005980 ORTHO05D007618 7.4e-192 674.1 449 78.4
MD10G1257800 Malus domestica HOM05D005980 ORTHO05D007618 2.8e-191 672.2 452 75.2
TWI73G1267 Tripterygium wilfordii HOM05D005980 ORTHO05D007618 3.7e-191 671.8 456 75.9
CiPaw.09G119300 Carya illinoinensis HOM05D005980 ORTHO05D007618 1.1e-190 670.2 449 79.5
ClCG01G024920 Citrullus lanatus HOM05D005980 ORTHO05D007618 1.4e-190 669.8 451 77.2
Eucgr.D00262 Eucalyptus grandis HOM05D005980 ORTHO05D007618 7.0e-190 667.5 472 73.9
Peaxi162Scf00670g00346 Petunia axillaris HOM05D005980 ORTHO05D007618 1.3e-188 663.3 445 75.3
QL05p054997 Quercus lobata HOM05D005980 ORTHO05D007618 1.3e-188 663.3 447 78.7
DCAR_003883 Daucus carota HOM05D005980 ORTHO05D007618 1.7e-188 662.9 449 74.4
Actinidia13438 Actinidia chinensis HOM05D005980 ORTHO05D007618 2.2e-188 662.5 455 74.1
Haze_05690 Corylus avellana HOM05D005980 ORTHO05D007618 8.5e-188 660.6 506 70.0
Hma1.2p1_0586F.1_g183830 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 8.5e-188 660.6 448 75.2
CsaV3_6G052070 Cucumis sativus L. HOM05D005980 ORTHO05D007618 2.5e-187 659.1 451 76.1
Cc09_g08730 Coffea canephora HOM05D005980 ORTHO05D007618 4.2e-187 658.3 447 76.3
PSO675G5271 Papaver somniferum HOM05D005980 ORTHO05D007618 1.8e-185 652.9 452 75.2
Aqoxy4G00005 Aquilegia oxysepala HOM05D005980 ORTHO05D007618 4.0e-185 651.7 449 72.6
Lj6g0019056 Lotus japonicus HOM05D005980 ORTHO05D007618 4.0e-185 651.7 456 76.3
PSO541G1780 Papaver somniferum HOM05D005980 ORTHO05D007618 2.6e-184 649.0 452 74.8
Glyma.13G221300 Glycine max HOM05D005980 ORTHO05D007618 5.7e-184 647.9 453 75.9
EL10Ac1g01827 Beta vulgaris HOM05D005980 ORTHO05D007618 1.3e-183 646.7 452 72.8
Lj1A1168T68 Lonicera japonica HOM05D005980 ORTHO05D007618 1.3e-183 646.7 451 73.4
Psat1g191560 Pisum sativum HOM05D005980 ORTHO05D007618 1.7e-183 646.4 460 75.7
Sed0023515 Sechium edule HOM05D005980 ORTHO05D007618 1.7e-183 646.4 452 74.1
MELO3C007103.2 Cucumis melo HOM05D005980 ORTHO05D007618 2.2e-183 646.0 468 72.6
Gorai.009G152600 Gossypium raimondii HOM05D005980 ORTHO05D007618 3.1e-182 642.1 416 81.0
AUR62025366 Chenopodium quinoa HOM05D005980 ORTHO05D007618 4.1e-182 641.7 455 72.5
Gohir.A05G146100 Gossypium hirsutum HOM05D005980 ORTHO05D007618 4.1e-182 641.7 449 76.8
AUR62028384 Chenopodium quinoa HOM05D005980 ORTHO05D007618 5.9e-181 637.9 454 72.0
Migut.M01863 Erythranthe guttata HOM05D005980 ORTHO05D007618 1.0e-180 637.1 448 72.1
Phvul.006G168100 Phaseolus vulgaris HOM05D005980 ORTHO05D007618 1.0e-180 637.1 454 72.5
Aa31LG10G6710 Aethionema arabicum HOM05D005980 ORTHO05D007618 1.3e-180 636.7 446 74.9
VMungo0540G0170 Vigna mungo HOM05D005980 ORTHO05D007618 2.9e-180 635.6 453 74.2
Medtr2g018740 Medicago truncatula HOM05D005980 ORTHO05D007618 8.5e-180 634.0 461 74.6
THA.LOC104820671 Tarenaya hassleriana HOM05D005980 ORTHO05D007618 1.9e-179 632.9 456 74.6
ATR1098G083 Amborella trichopoda HOM05D005980 ORTHO05D007618 4.2e-179 631.7 468 69.9
Ca_00513_v3 Cicer arietinum L. HOM05D005980 ORTHO05D007618 5.5e-179 631.3 461 74.2
AT2G34640 Arabidopsis thaliana HOM05D005980 ORTHO05D007618 9.4e-179 630.6 446 71.7
arahy.Tifrunner.gnm1.ann1.G1ZF0U Arachis hypogaea HOM05D005980 ORTHO05D007618 2.7e-178 629.0 449 74.2
A05p11020 Brassica napus HOM05D005980 ORTHO05D007618 8.0e-178 627.5 445 71.7
Nitab4.5_0005963g0020 Nicotiana tabacum HOM05D005980 ORTHO05D007618 8.0e-178 627.5 447 73.2
AL4G30630 Arabidopsis lyrata HOM05D005980 ORTHO05D007618 1.4e-177 626.7 446 71.5
BraA05t20047Z Brassica rapa HOM05D005980 ORTHO05D007618 1.8e-177 626.3 445 71.5
SGA_v2.0_scaffold51G18642 Striga asiatica HOM05D005980 ORTHO05D007618 1.8e-177 626.3 452 72.6
arahy.Tifrunner.gnm1.ann1.PI6078 Arachis hypogaea HOM05D005980 ORTHO05D007618 3.0e-177 625.5 449 73.5
BcaC02g11540 Brassica carinata HOM05D005980 ORTHO05D007618 8.8e-177 624.0 445 71.5
BolC4t23002H Brassica oleracea HOM05D005980 ORTHO05D007618 8.8e-177 624.0 445 71.5
Carub.0004s1633 Capsella rubella HOM05D005980 ORTHO05D007618 8.8e-177 624.0 446 71.7
Sed0012577 Sechium edule HOM05D005980 ORTHO05D007618 1.2e-176 623.6 452 72.6
C04p14140 Brassica napus HOM05D005980 ORTHO05D007618 4.4e-176 621.7 445 71.2
Lalb_Chr18g0055171 Lupinus albus HOM05D005980 ORTHO05D007618 1.3e-175 620.2 450 72.7
FAN25G0178 Fragaria x ananassa HOM05D005980 ORTHO05D007618 6.3e-175 617.8 464 70.0
TPR.G26225 Trifolium pratense HOM05D005980 ORTHO05D007618 1.4e-174 616.7 468 71.6
SalBow8G1809 Salvia bowleyana HOM05D005980 ORTHO05D007618 2.4e-174 615.9 449 73.5
Rhsim13G0118300 Rhododendron simsii HOM05D005980 ORTHO05D007618 7.0e-174 614.4 464 71.3
CARHR128740 Cardamine hirsuta HOM05D005980 ORTHO05D007618 2.0e-173 612.8 448 69.6
CANSAT35G0447 Cannabis sativa HOM05D005980 ORTHO05D007618 5.5e-171 604.7 452 70.1
Thhalv10016502m.g Eutrema salsugineum HOM05D005980 ORTHO05D007618 1.2e-170 603.6 447 69.8
Sp4g16910 Schrenkiella parvula HOM05D005980 ORTHO05D007618 4.0e-169 598.6 445 69.0
Lj2C323G3 Lonicera japonica HOM05D005980 ORTHO05D007618 1.4e-166 590.1 450 69.6
BcaNung07262 Brassica carinata HOM05D005980 ORTHO05D007618 1.5e-163 580.1 434 68.9
HanXRQChr10g0301191 Helianthus annuus HOM05D005980 ORTHO05D007618 1.6e-162 576.6 452 66.2
Ah.12g059810 Amaranthus hybridus HOM05D005980 ORTHO05D007618 9.8e-160 567.4 450 68.9
Sc05g0005970 Simmondsia chinensis HOM05D005980 ORTHO05D007618 4.9e-159 565.1 364 76.9
Lsat_1_v5_gn_9_33800 Lactuca sativa HOM05D005980 ORTHO05D007618 1.6e-157 560.1 457 64.8
unitig_578.g16128 Utricularia gibba HOM05D005980 ORTHO05D007618 2.8e-154 549.3 449 64.8
vmacro03427 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 4.0e-153 545.4 362 74.6
ECA247G3302 Erigeron canadensis HOM05D005980 ORTHO05D007618 5.4e-142 508.4 382 67.3
Os01g0769900 Oryza sativa ssp. japonica HOM05D005980 ORTHO05D007618 1.9e-139 500.0 475 58.9
Zm00001eb152010 Zea mays HOM05D005980 ORTHO05D007618 7.8e-133 478.0 485 55.7
HPP92_001893 Vanilla planifolia HOM05D005980 ORTHO05D007618 1.8e-97 360.5 304 62.5
MD05G1278700 Malus domestica HOM05D005980 ORTHO05D007618 7.2e-94 348.6 242 74.0
MBI02_g18932_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 6.3e-82 308.9 207 75.4
AagrBONN_evm.TU.Sc2ySwM_228.94 Anthoceros agrestis HOM05D005980 ORTHO05D007618 1.0e-79 301.6 446 43.5
Cpa.g.sc17.56 Carica papaya HOM05D005980 ORTHO05D007618 2.9e-79 300.1 160 87.5
Hma1.2p1_0586F.1_g183820 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 9.4e-78 295.0 207 72.9
Mapoly0061s0053 Marchantia polymorpha HOM05D005980 ORTHO05D007618 3.7e-74 283.1 409 40.6
CDE01G0059 Ceratophyllum demersum HOM05D005980 ORTHO05D007618 2.5e-70 270.4 214 65.9
Cpa.g.sc17.57 Carica papaya HOM05D005980 ORTHO05D007618 2.8e-66 256.9 178 73.0
Cpa.g.c47879 Carica papaya HOM05D005980 ORTHO05D007618 8.3e-66 255.4 177 72.9
Pp3c10_12300 Physcomitrium patens HOM05D005980 ORTHO05D007618 6.8e-60 235.7 354 39.5
Pp3c3_26950 Physcomitrium patens HOM05D005980 ORTHO05D007618 2.4e-57 227.3 464 35.6
SGA_v2.0_scaffold230G43391 Striga asiatica HOM05D005980 ORTHO05D007618 4.5e-56 223.0 125 79.2
arahy.Tifrunner.gnm1.ann1.D5DAI6 Arachis hypogaea HOM05D005980 ORTHO05D007618 6.6e-55 219.2 268 47.0
SGA_v2.0_scaffold6G03478 Striga asiatica HOM05D005980 ORTHO05D007618 8.6e-55 218.8 125 80.8
Hma1.2p1_0581F.1_g182930 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 3.6e-53 213.4 154 69.5
HPP92_001892 Vanilla planifolia HOM05D005980 ORTHO05D007618 1.2e-51 208.4 167 71.9
Lsat_1_v5_gn_1_94041 Lactuca sativa HOM05D005980 ORTHO05D007618 3.9e-47 193.4 178 57.3
CBR_g48045 Chara braunii HOM05D005980 ORTHO05D007618 3.1e-44 183.7 252 43.3
MD05G1278800 Malus domestica HOM05D005980 ORTHO05D007618 2.2e-34 151.0 80 83.8
Cpa.g.sc17.55 Carica papaya HOM05D005980 ORTHO05D007618 3.2e-33 147.1 115 71.3
SEGI_30301 Sequoiadendron giganteum HOM05D005980 ORTHO05D007618 2.2e-26 124.4 211 40.3
HanXRQChr10g0301121 Helianthus annuus HOM05D005980 ORTHO05D007618 1.1e-22 112.1 76 69.7
MBI02_g26594_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 1.8e-20 104.8 89 66.3
Haze_05663 Corylus avellana HOM05D005980 ORTHO05D007618 3.8e-18 97.1 119 51.3
vmacro03428 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 6.4e-18 96.3 102 61.8
arahy.Tifrunner.gnm1.ann1.MPA65D Arachis hypogaea HOM05D005980 ORTHO05D007618 7.1e-17 92.8 53 73.6
Glyma.15G091200 Glycine max HOM05D005980 ORTHO05D007618 5.1e-15 86.7 65 73.8
Actinidia33672 Actinidia chinensis HOM05D005980 ORTHO05D007618 5.6e-14 83.2 83 56.6
Lsat_1_v5_gn_1_94021 Lactuca sativa HOM05D005980 ORTHO05D007618 7.3e-14 82.8 149 44.3
MSTRG.16269 Avicennia marina HOM05D005980 ORTHO05D007618 1.1e-12 79.0 49 69.4
Lsat_1_v5_gn_7_71901 Lactuca sativa HOM05D002457 ORTHO05D005750 1.4e-12 78.6 93 43.0
Actinidia33673 Actinidia chinensis HOM05D005980 ORTHO05D007618 2.4e-12 77.8 126 43.7
MD05G1278900 Malus domestica HOM05D005980 ORTHO05D007618 1.7e-10 71.6 85 51.8
Cpa.g.c48158 Carica papaya HOM05D005980 ORTHO05D007618 1.1e-06 58.9 32 84.4


User provided reference genes

Program Settings