Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 2.1e-106 389.0 194 100.0
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 1.3e-100 369.8 194 93.3
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 4.6e-98 361.3 194 89.2
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 3.9e-97 358.2 194 88.7
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 5.1e-97 357.8 194 88.1
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 1.1e-96 356.7 194 87.6
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 1.5e-96 356.3 194 88.7
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 1.9e-96 355.9 194 89.2
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 1.9e-96 355.9 194 88.7
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 2.5e-96 355.5 194 87.6
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 2.5e-96 355.5 194 87.6
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 2.5e-96 355.5 194 87.6
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 3.3e-96 355.1 193 89.1
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 1.3e-95 353.2 194 88.1
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 1.6e-95 352.8 194 86.6
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 2.8e-95 352.1 194 87.1
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 2.8e-95 352.1 194 87.1
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 6.3e-95 350.9 194 87.6
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 1.1e-94 350.1 194 87.1
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 1.4e-94 349.7 194 87.1
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 2.4e-94 349.0 194 86.1
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 2.4e-94 349.0 194 86.1
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 3.1e-94 348.6 194 85.1
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 3.1e-94 348.6 194 85.1
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 3.1e-94 348.6 194 85.6
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 4.1e-94 348.2 194 87.6
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 6.9e-94 347.4 194 86.1
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 1.2e-93 346.7 194 86.1
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.5e-93 346.3 194 85.6
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 2.0e-93 345.9 194 85.1
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 2.6e-93 345.5 194 85.6
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 3.4e-93 345.1 194 85.1
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 5.9e-93 344.4 194 84.5
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 7.7e-93 344.0 194 84.0
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 1.0e-92 343.6 194 85.6
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 2.9e-92 342.0 194 83.5
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 2.9e-92 342.0 194 84.0
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 6.5e-92 340.9 194 84.0
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 1.9e-91 339.3 194 83.5
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 1.9e-91 339.3 194 84.0
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 3.2e-91 338.6 194 83.5
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 4.2e-91 338.2 194 84.5
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 4.2e-91 338.2 194 84.0
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 5.5e-91 337.8 194 82.0
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 7.2e-91 337.4 200 81.0
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 2.1e-90 335.9 194 84.0
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 2.1e-90 335.9 194 83.0
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 2.1e-90 335.9 195 84.1
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 6.1e-90 334.3 194 82.5
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 1.4e-89 333.2 194 82.0
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 1.4e-89 333.2 194 82.5
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 3.0e-89 332.0 225 75.6
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 3.0e-89 332.0 194 81.4
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 3.0e-89 332.0 194 82.0
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 3.0e-89 332.0 194 82.0
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 3.9e-89 331.6 194 82.0
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 6.7e-89 330.9 194 81.4
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 6.7e-89 330.9 235 72.3
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 6.7e-89 330.9 194 81.4
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 1.5e-88 329.7 194 80.9
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 1.5e-88 329.7 194 79.9
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 1.5e-88 329.7 194 80.9
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 1.5e-88 329.7 194 80.9
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 2.0e-88 329.3 194 80.9
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 5.7e-88 327.8 194 80.4
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 7.4e-88 327.4 194 79.9
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 9.7e-88 327.0 194 79.9
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 9.7e-88 327.0 194 78.4
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 1.3e-87 326.6 194 80.4
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 1.3e-87 326.6 187 82.4
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 3.7e-87 325.1 194 80.4
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 3.7e-87 325.1 194 80.4
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 3.7e-87 325.1 194 80.4
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 3.7e-87 325.1 210 75.2
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 3.7e-87 325.1 214 75.2
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 6.3e-87 324.3 194 79.4
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 8.2e-87 323.9 193 81.9
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 1.1e-86 323.6 194 79.9
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 1.4e-86 323.2 178 85.4
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 5.3e-86 321.2 194 79.4
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 5.3e-86 321.2 214 73.8
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 6.9e-86 320.9 214 73.8
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 1.5e-85 319.7 194 78.4
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 3.8e-84 315.1 194 77.8
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 1.1e-83 313.5 174 85.6
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 1.1e-83 313.5 194 76.8
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 1.9e-83 312.8 194 76.8
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 7.2e-83 310.8 187 77.5
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 1.2e-82 310.1 188 77.7
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 7.9e-82 307.4 175 84.6
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 7.9e-82 307.4 297 57.2
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 1.4e-81 306.6 194 78.4
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 5.1e-81 304.7 210 72.4
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 2.6e-80 302.4 194 77.3
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 9.7e-80 300.4 194 70.6
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 9.7e-80 300.4 194 74.7
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 6.3e-79 297.7 161 88.2
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 1.1e-78 297.0 194 71.1
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 2.4e-78 295.8 194 71.1
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 2.4e-78 295.8 194 70.6
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 3.5e-77 292.0 195 68.7
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 6.5e-76 287.7 274 58.4
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 3.6e-74 282.0 160 84.4
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 2.0e-72 276.2 283 55.1
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 8.2e-71 270.8 172 70.9
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 1.4e-70 270.0 162 79.6
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 1.0e-60 237.3 120 93.3
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 1.1e-59 233.8 137 82.5
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 2.5e-59 232.6 120 90.8
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 9.2e-54 214.2 134 76.9
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 3.8e-52 208.8 178 56.7
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 3.8e-52 208.8 130 75.4
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 2.8e-50 202.6 123 78.9
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 4.7e-50 201.8 123 78.0
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 9.8e-48 194.1 114 84.2
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 2.2e-47 193.0 191 50.8
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 9.5e-43 177.6 114 75.4
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.2e-40 170.6 93 86.0
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 2.0e-40 169.9 112 70.5
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 4.4e-40 168.7 173 51.4
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 2.9e-39 166.0 122 65.6
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 6.4e-39 164.9 99 77.8
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 9.5e-35 151.0 186 41.9
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 1.4e-33 147.1 92 78.3
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 2.2e-31 139.8 73 86.3
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 2.9e-31 139.4 76 81.6
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 3.7e-31 139.0 88 77.3
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 3.7e-31 139.0 88 77.3
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 8.3e-31 137.9 71 85.9
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 4.1e-30 135.6 73 84.9
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 4.1e-30 135.6 73 84.9
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 4.1e-30 135.6 73 84.9
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 3.3e-27 125.9 64 87.5
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 3.3e-19 99.4 96 55.2
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.2e-18 97.4 59 79.7
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.1e-13 80.1 55 70.9
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.0e-12 77.8 54 70.4
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.9e-11 73.6 83 49.4
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.9e-11 73.6 83 49.4
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 3.3e-11 72.8 40 85.0
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 1.6e-10 70.5 124 40.3
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 1.6e-10 70.5 93 44.1


User provided reference genes

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