Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G081678 Manihot esculenta HOM05D003391 ORTHO05D250639 9.6e-59 229.9 115 100.0
Manes.07G058173 Manihot esculenta HOM05D003391 ORTHO05D250310 3.1e-57 224.9 115 98.3
Manes.12G128950 Manihot esculenta HOM05D003391 ORTHO05D249565 3.1e-57 224.9 115 98.3
Manes.08G058900 Manihot esculenta HOM05D003391 ORTHO05D250822 2.1e-42 175.6 90 97.8
Manes.01G037700 Manihot esculenta HOM05D003391 ORTHO05D005563 5.1e-36 154.5 82 97.6
COL.COLO4_06714 Corchorus olitorius HOM05D003391 ORTHO05D005563 4.6e-29 131.3 79 83.5
Gohir.A08G160766 Gossypium hirsutum HOM05D003391 ORTHO05D005563 6.0e-29 131.0 79 83.5
Gohir.D08G181000 Gossypium hirsutum HOM05D003391 ORTHO05D005563 6.0e-29 131.0 79 83.5
Gorai.004G190000 Gossypium raimondii HOM05D003391 ORTHO05D005563 1.3e-28 129.8 79 82.3
Thecc.03G235800 Theobroma cacao HOM05D003391 ORTHO05D005563 6.7e-28 127.5 79 82.3
Duzib068G0467 Durio zibethinus HOM05D003391 ORTHO05D005563 1.5e-27 126.3 78 83.3
Potri.016G023000 Populus trichocarpa HOM05D003391 ORTHO05D005563 4.3e-27 124.8 79 81.0
Ca_11369_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 1.3e-26 123.2 80 82.5
Ca_30786_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 1.3e-26 123.2 80 82.5
Atru.chr13.1465 Acer truncatum HOM05D003391 ORTHO05D005563 1.6e-26 122.9 80 81.2
Duzib084G0647 Durio zibethinus HOM05D003391 ORTHO05D005563 1.6e-26 122.9 79 81.0
Medtr2g028270 Medicago truncatula HOM05D003391 ORTHO05D005563 1.6e-26 122.9 80 82.5
Sed0012933 Sechium edule HOM05D003391 ORTHO05D005563 2.1e-26 122.5 79 79.7
Lalb_Chr18g0057621 Lupinus albus HOM05D003391 ORTHO05D005563 2.8e-26 122.1 80 82.5
Sabra16G0023000 Salix brachista HOM05D003391 ORTHO05D005563 3.7e-26 121.7 79 82.3
Sabra16G0029200 Salix brachista HOM05D003391 ORTHO05D005563 3.7e-26 121.7 79 82.3
arahy.Tifrunner.gnm1.ann1.635YAA Arachis hypogaea HOM05D003391 ORTHO05D005563 4.8e-26 121.3 80 80.0
arahy.Tifrunner.gnm1.ann1.QTWQ8J Arachis hypogaea HOM05D003391 ORTHO05D005563 4.8e-26 121.3 80 80.0
Ca_00789_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 4.8e-26 121.3 79 82.3
Ciclev10029974m.g Citrus clementina HOM05D003391 ORTHO05D005563 6.3e-26 120.9 80 80.0
TPR.G10474 Trifolium pratense HOM05D003391 ORTHO05D005563 8.2e-26 120.6 80 81.2
VMungo0540G0836 Vigna mungo HOM05D003391 ORTHO05D005563 8.2e-26 120.6 80 81.2
Glyma.15G124200 Glycine max HOM05D003391 ORTHO05D005563 1.4e-25 119.8 80 80.0
RcHm_v2.0_Chr2g0154761 Rosa chinensis HOM05D003391 ORTHO05D005563 1.4e-25 119.8 80 78.8
CiPaw.10G102000 Carya illinoinensis HOM05D003391 ORTHO05D005563 1.8e-25 119.4 79 81.0
Glyma.09G018300 Glycine max HOM05D003391 ORTHO05D005563 1.8e-25 119.4 80 80.0
Psat1g171000 Pisum sativum HOM05D003391 ORTHO05D005563 1.8e-25 119.4 80 80.0
MELO3C026391.2 Cucumis melo HOM05D003391 ORTHO05D005563 2.4e-25 119.0 80 80.0
CsaV3_4G032190 Cucumis sativus L. HOM05D003391 ORTHO05D005563 2.4e-25 119.0 80 80.0
Lalb_Chr15g0088521 Lupinus albus HOM05D003391 ORTHO05D005563 2.4e-25 119.0 80 80.0
Phvul.006G134000 Phaseolus vulgaris HOM05D003391 ORTHO05D005563 2.4e-25 119.0 80 80.0
Cpa.g.sc122.39 Carica papaya HOM05D003391 ORTHO05D005563 3.1e-25 118.6 100 68.0
Cfa018226 Carpinus fangiana HOM05D003391 ORTHO05D005563 4.1e-25 118.2 80 80.0
CANSAT64G0651 Cannabis sativa HOM05D003391 ORTHO05D005563 5.3e-25 117.9 78 78.2
Lj6g0008612 Lotus japonicus HOM05D003391 ORTHO05D005563 5.3e-25 117.9 80 78.8
FAN05G0705 Fragaria x ananassa HOM05D003391 ORTHO05D005563 6.9e-25 117.5 80 77.5
QL04p065456 Quercus lobata HOM05D003391 ORTHO05D005563 6.9e-25 117.5 79 78.5
FvH4_6g40130 Fragaria vesca HOM05D003391 ORTHO05D005563 9.0e-25 117.1 79 75.9
FAN14G1902 Fragaria x ananassa HOM05D003391 ORTHO05D005563 9.0e-25 117.1 79 75.9
MD09G1135000 Malus domestica HOM05D003391 ORTHO05D005563 1.5e-24 116.3 79 79.7
Prupe.3G191700 Prunus persica HOM05D003391 ORTHO05D005563 1.5e-24 116.3 83 77.1
GSVIVG01016094001 Vitis vinifera HOM05D003391 ORTHO05D005563 1.5e-24 116.3 80 77.5
FAN09G1714 Fragaria x ananassa HOM05D003391 ORTHO05D005563 2.0e-24 115.9 80 77.5
Dinv10208 Davidia involucrata HOM05D003391 ORTHO05D005563 4.5e-24 114.8 81 72.8
FAN02G4219 Fragaria x ananassa HOM05D003391 ORTHO05D005563 4.5e-24 114.8 80 76.2
TWI74G0249 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 4.5e-24 114.8 80 77.5
Lj7A654G26 Lonicera japonica HOM05D003391 ORTHO05D005563 5.9e-24 114.4 82 75.6
THA.LOC104809239 Tarenaya hassleriana HOM05D003391 ORTHO05D005563 1.0e-23 113.6 79 75.9
arahy.Tifrunner.gnm1.ann1.MM6MID Arachis hypogaea HOM05D003391 ORTHO05D005563 1.3e-23 113.2 80 76.2
MD17G1124000 Malus domestica HOM05D003391 ORTHO05D005563 2.2e-23 112.5 79 78.5
CSS0023421 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 2.9e-23 112.1 82 75.6
Hma1.2p1_0583F.1_g183000 Hydrangea macrophylla HOM05D003391 ORTHO05D005563 5.0e-23 111.3 82 74.4
PSO541G1880 Papaver somniferum HOM05D003391 ORTHO05D005563 5.0e-23 111.3 82 69.5
PSO675G3205 Papaver somniferum HOM05D003391 ORTHO05D005563 5.0e-23 111.3 82 69.5
TAR626G0891 Trochodendron aralioides HOM05D003391 ORTHO05D005563 5.0e-23 111.3 82 73.2
CSS0020230 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 8.4e-23 110.5 82 74.4
TWI77G0821 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 8.4e-23 110.5 99 63.6
AUR62022296 Chenopodium quinoa HOM05D003391 ORTHO05D005563 4.2e-22 108.2 82 69.5
vmacro13793 Vaccinium macrocarpon HOM05D003391 ORTHO05D005563 4.2e-22 108.2 81 69.1
Rhsim11G0087500 Rhododendron simsii HOM05D003391 ORTHO05D005563 5.5e-22 107.8 81 69.1
Aa31LG10G3790 Aethionema arabicum HOM05D003391 ORTHO05D005563 9.3e-22 107.1 83 68.7
Eucgr.G02677 Eucalyptus grandis HOM05D003391 ORTHO05D005563 9.3e-22 107.1 79 73.4
Eucgr.L01917 Eucalyptus grandis HOM05D003391 ORTHO05D005563 9.3e-22 107.1 79 73.4
MSTRG.9187 Avicennia marina HOM05D003391 ORTHO05D005563 1.2e-21 106.7 82 70.7
AUR62023891 Chenopodium quinoa HOM05D003391 ORTHO05D005563 1.2e-21 106.7 82 69.5
HanXRQChr04g0122221 Helianthus annuus HOM05D003391 ORTHO05D005563 1.6e-21 106.3 85 65.9
SalBow4G0334 Salvia bowleyana HOM05D003391 ORTHO05D005563 1.6e-21 106.3 81 70.4
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 4.6e-21 104.8 81 66.7
EL10Ac9g21140 Beta vulgaris HOM05D003391 ORTHO05D005563 1.0e-20 103.6 82 68.3
ECA236G2623 Erigeron canadensis HOM05D003391 ORTHO05D005563 1.0e-20 103.6 85 64.7
MSTRG.27454 Avicennia marina HOM05D003391 ORTHO05D005563 1.3e-20 103.2 84 70.2
Cc06_g14340 Coffea canephora HOM05D003391 ORTHO05D005563 1.3e-20 103.2 90 66.7
Aqoxy3G00251 Aquilegia oxysepala HOM05D003391 ORTHO05D005563 1.8e-20 102.8 80 68.8
PGR042G2316 Punica granatum HOM05D003391 ORTHO05D005563 1.8e-20 102.8 80 68.8
Lsat_1_v5_gn_7_7561 Lactuca sativa HOM05D003391 ORTHO05D005563 3.9e-20 101.7 91 60.4
Migut.F02007 Erythranthe guttata HOM05D003391 ORTHO05D005563 5.1e-20 101.3 85 69.4
Nn7g37683 Nelumbo nucifera HOM05D003391 ORTHO05D005563 5.1e-20 101.3 82 65.9
Ah.01g004390 Amaranthus hybridus HOM05D003391 ORTHO05D005563 1.1e-19 100.1 82 68.3
BraA05t20918Z Brassica rapa HOM05D003391 ORTHO05D005563 1.5e-19 99.8 106 53.8
Migut.F01784 Erythranthe guttata HOM05D003391 ORTHO05D005563 1.9e-19 99.4 81 66.7
BolC5t32086H Brassica oleracea HOM05D003391 ORTHO05D005563 2.5e-19 99.0 98 57.1
HPP92_006006 Vanilla planifolia HOM05D003391 ORTHO05D005563 2.5e-19 99.0 90 65.6
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 4.3e-19 98.2 84 67.9
CDE02G0628 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 5.7e-19 97.8 91 64.8
MBI18_g28220_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 5.7e-19 97.8 85 65.9
BcaB02g11154 Brassica carinata HOM05D003391 ORTHO05D005563 9.7e-19 97.1 83 62.7
A05p20100 Brassica napus HOM05D003391 ORTHO05D005563 9.7e-19 97.1 83 62.7
C05p33590 Brassica napus HOM05D003391 ORTHO05D005563 9.7e-19 97.1 83 62.7
Nitab4.5_0000575g0140 Nicotiana tabacum HOM05D003391 ORTHO05D005563 9.7e-19 97.1 82 65.9
Hund02122 Selenicereus undatus HOM05D003391 ORTHO05D005563 1.3e-18 96.7 81 65.4
ECA240G2134 Erigeron canadensis HOM05D003391 ORTHO05D005563 1.6e-18 96.3 83 57.8
HanXRQChr03g0093781 Helianthus annuus HOM05D003391 ORTHO05D005563 1.6e-18 96.3 86 60.5
Lsat_1_v5_gn_3_133361 Lactuca sativa HOM05D003391 ORTHO05D005563 2.2e-18 95.9 80 66.2
PGSC0003DMG401012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 2.8e-18 95.5 82 65.9
unitig_899.g14436 Utricularia gibba HOM05D003391 ORTHO05D005563 2.8e-18 95.5 82 64.6
Sp1g37350 Schrenkiella parvula HOM05D003391 ORTHO05D005563 3.7e-18 95.1 83 62.7
BcaC05g27411 Brassica carinata HOM05D003391 ORTHO05D005563 4.8e-18 94.7 83 61.4
Thhalv10011301m.g Eutrema salsugineum HOM05D003391 ORTHO05D005563 4.8e-18 94.7 83 63.9
Peaxi162Scf00072g00087 Petunia axillaris HOM05D003391 ORTHO05D005563 4.8e-18 94.7 82 65.9
BcaB04g17246 Brassica carinata HOM05D003391 ORTHO05D005563 8.2e-18 94.0 87 59.8
BcaC01g01234 Brassica carinata HOM05D003391 ORTHO05D005563 8.2e-18 94.0 87 59.8
CARHR040530 Cardamine hirsuta HOM05D003391 ORTHO05D005563 8.2e-18 94.0 79 63.3
DCAR_003077 Daucus carota HOM05D003391 ORTHO05D005563 8.2e-18 94.0 80 65.0
Oeu033843.4 Olea europaea HOM05D003391 ORTHO05D005563 8.2e-18 94.0 78 66.7
Solyc04g049490.3 Solanum lycopersicum HOM05D003391 ORTHO05D005563 8.2e-18 94.0 82 65.9
SGA_v2.0_scaffold62G21434 Striga asiatica HOM05D003391 ORTHO05D005563 8.2e-18 94.0 96 61.5
C03p89680 Brassica napus HOM05D003391 ORTHO05D005563 1.1e-17 93.6 85 62.4
CAN.G466.12 Capsicum annuum HOM05D003391 ORTHO05D005563 1.4e-17 93.2 82 64.6
Sopen04g019460 Solanum pennellii HOM05D003391 ORTHO05D005563 1.8e-17 92.8 82 64.6
BolC3t21285H Brassica oleracea HOM05D003391 ORTHO05D005563 2.4e-17 92.4 87 58.6
ATR1098G037 Amborella trichopoda HOM05D003391 ORTHO05D005563 4.1e-17 91.7 84 65.5
CAN.G998.14 Capsicum annuum HOM05D003391 ORTHO05D005563 4.1e-17 91.7 82 63.4
AL1G58160 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 5.3e-17 91.3 83 60.2
Sc24g0003350 Simmondsia chinensis HOM05D003391 ORTHO05D005563 6.9e-17 90.9 82 61.0
Atru.chr13.1440 Acer truncatum HOM05D003391 ORTHO05D005563 1.2e-16 90.1 61 78.7
AT1G50500 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 3.4e-16 88.6 83 59.0
Nitab4.5_0007706g0020 Nicotiana tabacum HOM05D003391 ORTHO05D005563 8.5e-15 84.0 82 61.0
Carub.0001s3957 Capsella rubella HOM05D003391 ORTHO05D005563 1.1e-14 83.6 82 56.1
Zm00001eb144220 Zea mays HOM05D003391 ORTHO05D005563 6.1e-13 77.8 82 56.1
Actinidia37789 Actinidia chinensis HOM05D003391 ORTHO05D005563 3.9e-12 75.1 81 55.6
Oeu030440.3 Olea europaea HOM05D003391 ORTHO05D005563 7.4e-11 70.9 52 71.2
SMO196G0220 Selaginella moellendorffii HOM05D003391 ORTHO05D005563 9.7e-11 70.5 89 51.7
Pp3c24_4920 Physcomitrium patens HOM05D003391 ORTHO05D005563 6.3e-10 67.8 88 51.1
AL1G58810 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 8.2e-10 67.4 91 46.2
Mapoly0030s0152 Marchantia polymorpha HOM05D003391 ORTHO05D005563 8.2e-10 67.4 94 47.9
Pp3c8_8190 Physcomitrium patens HOM05D003391 ORTHO05D005563 8.2e-10 67.4 93 47.3
ClCG11G016680 Citrullus lanatus HOM05D003391 ORTHO05D005563 1.9e-06 56.2 40 77.5


User provided reference genes

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