Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G151175 Manihot esculenta HOM05D003452 ORTHO05D004046 2.6e-79 298.9 178 100.0
Manes.12G151100 Manihot esculenta HOM05D003452 ORTHO05D004046 3.2e-69 265.4 162 99.4
Sabra07G0043000 Salix brachista HOM05D003452 ORTHO05D004046 4.1e-32 142.1 158 51.9
Potri.007G048000 Populus trichocarpa HOM05D003452 ORTHO05D004046 2.6e-31 139.4 157 63.1
Gorai.003G066000 Gossypium raimondii HOM05D003452 ORTHO05D004046 1.0e-27 127.5 176 44.9
Gohir.D11G232800 Gossypium hirsutum HOM05D003452 ORTHO05D004046 1.3e-27 127.1 176 44.3
Atru.chr3.258 Acer truncatum HOM05D003452 ORTHO05D004046 5.1e-27 125.2 178 46.1
Dinv26859 Davidia involucrata HOM05D003452 ORTHO05D004046 4.8e-25 118.6 125 53.6
THA.LOC104827394 Tarenaya hassleriana HOM05D003452 ORTHO05D004046 8.2e-25 117.9 181 45.9
Duzib147G1492 Durio zibethinus HOM05D003452 ORTHO05D004046 2.4e-24 116.3 131 51.9
Cpa.g.sc55.98 Carica papaya HOM05D003452 ORTHO05D004046 5.9e-23 111.7 203 39.4
THA.LOC104805170 Tarenaya hassleriana HOM05D003452 ORTHO05D004046 1.3e-22 110.5 171 45.0
Lj7A83T65 Lonicera japonica HOM05D003452 ORTHO05D004046 2.2e-22 109.8 120 51.7
Lj7A76T78 Lonicera japonica HOM05D003452 ORTHO05D004046 8.5e-22 107.8 120 50.8
Cfa004056 Carpinus fangiana HOM05D003452 ORTHO05D004046 1.9e-21 106.7 163 55.8
Hma1.2p1_0017F.1_g011830 Hydrangea macrophylla HOM05D003452 ORTHO05D004046 5.5e-21 105.1 129 45.7
Ciclev10025436m.g Citrus clementina HOM05D003452 ORTHO05D004046 1.6e-20 103.6 180 40.0
Eucgr.I00803 Eucalyptus grandis HOM05D003452 ORTHO05D004046 2.1e-20 103.2 125 48.8
Rhsim10G0113000 Rhododendron simsii HOM05D003452 ORTHO05D004046 2.7e-20 102.8 126 47.6
Haze_15356 Corylus avellana HOM05D003452 ORTHO05D004046 1.4e-19 100.5 168 53.6
Thecc.01G062600 Theobroma cacao HOM05D003452 ORTHO05D004046 3.0e-19 99.4 101 51.5
PGR004G0567 Punica granatum HOM05D003452 ORTHO05D004046 3.9e-19 99.0 118 49.2
Actinidia12025 Actinidia chinensis HOM05D003452 ORTHO05D004046 8.8e-19 97.8 126 46.0
TAR381G1138 Trochodendron aralioides HOM05D003452 ORTHO05D004046 8.8e-19 97.8 133 44.4
Prupe.6G230000 Prunus persica HOM05D003452 ORTHO05D004046 2.6e-18 96.3 170 48.2
CSS0049847 Camellia sinensis var. sinensis HOM05D003452 ORTHO05D004046 4.4e-18 95.5 126 46.0
Lj4A155G89 Lonicera japonica HOM05D003452 ORTHO05D004046 7.4e-18 94.7 116 49.1
Aa31LG1G15770 Aethionema arabicum HOM05D003452 ORTHO05D004046 9.7e-18 94.4 166 38.6
vmacro05258 Vaccinium macrocarpon HOM05D003452 ORTHO05D004046 9.7e-18 94.4 143 43.4
CiPaw.02G006400 Carya illinoinensis HOM05D003452 ORTHO05D004046 6.3e-17 91.7 175 46.9
Oeu049888.1 Olea europaea HOM05D003452 ORTHO05D004046 6.3e-17 91.7 118 44.1
Cc07_g06390 Coffea canephora HOM05D003452 ORTHO05D004046 2.4e-16 89.7 125 45.6
TWI73G0964 Tripterygium wilfordii HOM05D003452 ORTHO05D004046 3.1e-16 89.4 191 47.1
MD02G1178000 Malus domestica HOM05D003452 ORTHO05D004046 4.1e-16 89.0 119 44.5
Atru.chr3.259 Acer truncatum HOM05D003452 ORTHO05D004046 1.2e-15 87.4 94 52.1
ECA246G2207 Erigeron canadensis HOM05D003452 ORTHO05D004046 1.5e-15 87.0 143 38.5
MD15G1287900 Malus domestica HOM05D003452 ORTHO05D004046 1.5e-15 87.0 119 46.2
Nn5g30393 Nelumbo nucifera HOM05D003452 ORTHO05D004046 1.5e-15 87.0 126 40.5
Lalb_Chr09g0323371 Lupinus albus HOM05D003452 ORTHO05D004046 2.0e-15 86.7 113 47.8
AL8G44100 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 2.6e-15 86.3 157 47.1
Sc18g0004770 Simmondsia chinensis HOM05D003452 ORTHO05D004046 2.6e-15 86.3 124 41.1
FAN19G1474 Fragaria x ananassa HOM05D003452 ORTHO05D004046 4.5e-15 85.5 176 46.0
FAN23G2911 Fragaria x ananassa HOM05D003452 ORTHO05D004046 5.9e-15 85.1 175 45.7
FAN26G2566 Fragaria x ananassa HOM05D003452 ORTHO05D004046 1.0e-14 84.3 175 45.1
QL12p009800 Quercus lobata HOM05D003452 ORTHO05D004046 1.0e-14 84.3 173 49.7
FvH4_1g16590 Fragaria vesca HOM05D003452 ORTHO05D004046 1.3e-14 84.0 174 46.0
Thhalv10003942m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 1.7e-14 83.6 172 44.8
FAN12G4129 Fragaria x ananassa HOM05D003452 ORTHO05D004046 1.7e-14 83.6 128 39.1
FAN28G2117 Fragaria x ananassa HOM05D003452 ORTHO05D004046 1.7e-14 83.6 178 43.8
Medtr1g023955 Medicago truncatula HOM05D003452 ORTHO05D004046 2.2e-14 83.2 120 43.3
Sp2g29430 Schrenkiella parvula HOM05D003452 ORTHO05D004046 2.2e-14 83.2 170 35.3
VMungo0251G0295 Vigna mungo HOM05D003452 ORTHO05D004046 5.0e-14 82.0 120 42.5
CARHR280390 Cardamine hirsuta HOM05D003452 ORTHO05D004046 6.5e-14 81.6 171 46.2
Peaxi162Scf00472g00008 Petunia axillaris HOM05D003452 ORTHO05D004046 6.5e-14 81.6 133 40.6
AT5G67240 Arabidopsis thaliana HOM05D003452 ORTHO05D004046 8.5e-14 81.3 112 40.2
Carub.0008s2727 Capsella rubella HOM05D003452 ORTHO05D004046 1.1e-13 80.9 121 42.1
HanXRQChr11g0348391 Helianthus annuus HOM05D003452 ORTHO05D004046 1.4e-13 80.5 127 37.8
Lalb_Chr16g0378691 Lupinus albus HOM05D003452 ORTHO05D004046 1.4e-13 80.5 119 45.4
Sed0010356 Sechium edule HOM05D003452 ORTHO05D004046 1.4e-13 80.5 173 46.2
TPR.G34364 Trifolium pratense HOM05D003452 ORTHO05D004046 1.4e-13 80.5 115 44.3
Aqoxy2G00584 Aquilegia oxysepala HOM05D003452 ORTHO05D004046 1.9e-13 80.1 106 42.5
ClCG01G017040 Citrullus lanatus HOM05D003452 ORTHO05D004046 1.9e-13 80.1 177 47.5
SGA_v2.0_scaffold15G07361 Striga asiatica HOM05D003452 ORTHO05D004046 1.9e-13 80.1 107 43.9
Ca_13403_v3 Cicer arietinum L. HOM05D003452 ORTHO05D004046 3.2e-13 79.3 144 38.2
Ca_13416_v3 Cicer arietinum L. HOM05D003452 ORTHO05D004046 3.2e-13 79.3 144 38.2
Gohir.A11G230304 Gossypium hirsutum HOM05D003452 ORTHO05D004046 4.2e-13 79.0 68 52.9
RcHm_v2.0_Chr2g0106501 Rosa chinensis HOM05D003452 ORTHO05D004046 4.2e-13 79.0 177 43.5
CsaV3_6G043510 Cucumis sativus L. HOM05D003452 ORTHO05D004046 5.5e-13 78.6 177 48.0
Migut.H00401 Erythranthe guttata HOM05D003452 ORTHO05D004046 5.5e-13 78.6 106 44.3
Actinidia36467 Actinidia chinensis HOM05D003452 ORTHO05D004046 7.2e-13 78.2 99 46.5
PSO447G0386 Papaver somniferum HOM05D003452 ORTHO05D004046 7.2e-13 78.2 121 41.3
Hund13910 Selenicereus undatus HOM05D003452 ORTHO05D004046 9.4e-13 77.8 121 39.7
Glyma.17G167900 Glycine max HOM05D003452 ORTHO05D004046 2.1e-12 76.6 129 39.5
PGSC0003DMG400010461 Solanum tuberosum HOM05D003452 ORTHO05D004046 3.6e-12 75.9 128 39.1
AUR62038246 Chenopodium quinoa HOM05D003452 ORTHO05D004046 4.7e-12 75.5 120 44.2
Lsat_1_v5_gn_3_90381 Lactuca sativa HOM05D003452 ORTHO05D004046 4.7e-12 75.5 127 40.2
Lj1g0003061 Lotus japonicus HOM05D003452 ORTHO05D004046 4.7e-12 75.5 132 40.2
CAN.G1778.2 Capsicum annuum HOM05D003452 ORTHO05D004046 6.1e-12 75.1 127 39.4
MSTRG.2860 Avicennia marina HOM05D003452 ORTHO05D004046 8.0e-12 74.7 113 42.5
Phvul.003G240600 Phaseolus vulgaris HOM05D003452 ORTHO05D004046 1.0e-11 74.3 91 46.2
Aqoxy6G02896 Aquilegia oxysepala HOM05D003452 ORTHO05D004046 1.4e-11 73.9 131 35.9
Lj5g0005600 Lotus japonicus HOM05D003452 ORTHO05D004046 1.4e-11 73.9 132 40.2
Nitab4.5_0001192g0060 Nicotiana tabacum HOM05D003452 ORTHO05D004046 1.8e-11 73.6 125 36.0
EL10Ac6g15698 Beta vulgaris HOM05D003452 ORTHO05D004046 3.9e-11 72.4 120 41.7
Nitab4.5_0001297g0030 Nicotiana tabacum HOM05D003452 ORTHO05D004046 3.9e-11 72.4 130 33.8
Solyc10g084160.2 Solanum lycopersicum HOM05D003452 ORTHO05D004046 3.9e-11 72.4 128 37.5
CSS0011108 Camellia sinensis var. sinensis HOM05D003452 ORTHO05D004046 6.7e-11 71.6 124 41.1
Sopen10g033610 Solanum pennellii HOM05D003452 ORTHO05D004046 6.7e-11 71.6 128 36.7
FvH4_4g28290 Fragaria vesca HOM05D003452 ORTHO05D004046 8.8e-11 71.2 94 44.7
CAN.G1778.3 Capsicum annuum HOM05D003452 ORTHO05D004046 1.1e-10 70.9 126 35.7
Lalb_Chr05g0226301 Lupinus albus HOM05D003452 ORTHO05D004046 1.5e-10 70.5 145 34.5
DCAR_010856 Daucus carota HOM05D003452 ORTHO05D004046 4.4e-10 68.9 158 32.3
Thhalv10024938m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 4.4e-10 68.9 141 35.5
ATR0006G091 Amborella trichopoda HOM05D003452 ORTHO05D004046 2.2e-09 66.6 113 39.8
C01p30090 Brassica napus HOM05D003452 ORTHO05D004046 6.3e-09 65.1 61 54.1
BolC1t02953H Brassica oleracea HOM05D003452 ORTHO05D004046 6.3e-09 65.1 61 54.1
BcaC09g50006 Brassica carinata HOM05D003452 ORTHO05D004046 1.8e-08 63.5 61 52.5
unitig_744.g24372 Utricularia gibba HOM05D003452 ORTHO05D004046 1.8e-08 63.5 113 38.9
BcaB02g09943 Brassica carinata HOM05D003452 ORTHO05D004046 2.4e-08 63.2 131 33.6
A01p24270 Brassica napus HOM05D003452 ORTHO05D004046 2.4e-08 63.2 61 52.5
BraA01t02340Z Brassica rapa HOM05D003452 ORTHO05D004046 2.4e-08 63.2 61 52.5
Nn1g04732 Nelumbo nucifera HOM05D003452 ORTHO05D004046 4.1e-08 62.4 91 40.7
Sp7g29060 Schrenkiella parvula HOM05D003452 ORTHO05D004046 7.0e-08 61.6 137 33.6
Psat6g004200 Pisum sativum HOM05D003452 ORTHO05D004046 9.1e-08 61.2 136 36.0
Sp7g29190 Schrenkiella parvula HOM05D003452 ORTHO05D004046 9.1e-08 61.2 92 39.1
BcaB05g23189 Brassica carinata HOM05D003452 ORTHO05D004046 1.6e-07 60.5 64 46.9
C08p25210 Brassica napus HOM05D003452 ORTHO05D004046 1.6e-07 60.5 75 44.0
BolC8t50143H Brassica oleracea HOM05D003452 ORTHO05D004046 1.6e-07 60.5 75 44.0
PSO384G3646 Papaver somniferum HOM05D003452 ORTHO05D004046 1.6e-07 60.5 63 50.8
A09p43220 Brassica napus HOM05D003452 ORTHO05D004046 2.0e-07 60.1 75 42.7
BraA09t39792Z Brassica rapa HOM05D003452 ORTHO05D004046 2.0e-07 60.1 75 42.7
PSO339G0322 Papaver somniferum HOM05D003452 ORTHO05D004046 2.0e-07 60.1 88 42.0
Carub.0005s1644 Capsella rubella HOM05D003452 ORTHO05D004046 2.6e-07 59.7 64 46.9
Sp5g12020 Schrenkiella parvula HOM05D003452 ORTHO05D004046 2.6e-07 59.7 61 47.5
BcaC07g39477 Brassica carinata HOM05D003452 ORTHO05D004046 5.9e-07 58.5 75 41.3
BcaC06g34807 Brassica carinata HOM05D001905 ORTHO05D001820 7.7e-07 58.2 66 43.9
BcaC07g39478 Brassica carinata HOM05D003452 ORTHO05D004046 7.7e-07 58.2 68 44.1
C07p24440 Brassica napus HOM05D001905 ORTHO05D001820 7.7e-07 58.2 66 43.9
BolC7t42964H Brassica oleracea HOM05D001905 ORTHO05D001820 7.7e-07 58.2 66 43.9
AL6G15430 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 1.0e-06 57.8 112 33.0
AT3G50100 Arabidopsis thaliana HOM05D003452 ORTHO05D004046 1.3e-06 57.4 62 46.8
PSO700G0024 Papaver somniferum HOM05D003452 ORTHO05D004046 2.2e-06 56.6 63 47.6
BcaB01g00639 Brassica carinata HOM05D003452 ORTHO05D004046 2.9e-06 56.2 75 41.3
Thhalv10011012m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 2.9e-06 56.2 64 48.4
Carub.0006s0444 Capsella rubella HOM05D003452 ORTHO05D004046 3.8e-06 55.8 107 34.6
AL5G30220 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 6.5e-06 55.1 62 46.8
BcaC09g50010 Brassica carinata HOM05D003452 ORTHO05D004046 6.5e-06 55.1 61 49.2
C01p30070 Brassica napus HOM05D003452 ORTHO05D004046 6.5e-06 55.1 61 49.2
BolC1t02949H Brassica oleracea HOM05D003452 ORTHO05D004046 6.5e-06 55.1 61 49.2
CARHR207730 Cardamine hirsuta HOM05D003452 ORTHO05D004046 8.5e-06 54.7 71 40.8


User provided reference genes

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