Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 0.0e+00 1117.1 586 100.0
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 1.8e-182 643.3 592 61.5
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 1.2e-181 640.6 590 61.4
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 1.4e-177 627.1 596 59.9
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 8.9e-177 624.4 593 58.9
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 1.7e-175 620.2 629 57.2
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 2.9e-175 619.4 597 60.8
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 2.4e-174 616.3 593 63.1
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 2.1e-170 603.2 596 58.2
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 1.5e-168 597.0 604 59.9
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 4.4e-168 595.5 613 59.9
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 4.9e-167 592.0 596 57.4
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 1.8e-161 573.5 588 56.0
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 3.1e-161 572.8 592 55.4
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 9.8e-160 567.8 609 58.0
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 1.7e-159 567.0 589 58.2
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 4.1e-158 562.4 423 71.6
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 6.0e-157 558.5 602 54.5
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 7.8e-157 558.1 530 59.2
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 1.9e-155 553.5 591 56.7
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 3.6e-154 549.3 619 53.0
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 4.7e-154 548.9 598 56.0
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 8.1e-154 548.1 601 56.4
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 3.1e-153 546.2 604 54.0
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 4.0e-153 545.8 587 57.6
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 5.2e-153 545.4 593 56.7
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 8.9e-153 544.7 594 56.7
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 5.8e-152 542.0 598 55.9
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 8.4e-151 538.1 704 53.3
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 1.0e-148 531.2 635 52.8
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 2.3e-148 530.0 594 56.1
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 1.9e-147 526.9 671 50.4
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 7.3e-147 525.0 635 52.1
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 6.2e-146 521.9 568 53.5
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 6.4e-143 511.9 681 50.2
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 1.4e-142 510.8 669 49.3
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 2.4e-142 510.0 652 50.5
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 2.1e-141 506.9 586 52.9
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 2.7e-141 506.5 447 62.6
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 3.5e-141 506.1 583 54.7
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 3.5e-141 506.1 583 54.7
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 4.6e-141 505.8 591 54.3
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 2.3e-140 503.4 608 48.7
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 5.1e-140 502.3 583 54.4
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 8.7e-140 501.5 611 51.9
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 2.5e-139 500.0 629 51.5
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 5.6e-139 498.8 601 53.4
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 2.1e-138 496.9 605 51.2
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 2.1e-138 496.9 585 53.2
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 3.6e-138 496.1 565 53.1
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 6.2e-138 495.4 646 49.1
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 1.1e-137 494.6 679 47.6
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 9.0e-137 491.5 581 53.7
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 1.2e-136 491.1 654 49.8
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 2.0e-136 490.3 583 52.7
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 2.6e-136 490.0 528 55.5
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 9.9e-136 488.0 548 54.2
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 1.3e-135 487.6 635 49.8
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 2.2e-135 486.9 654 49.4
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 4.9e-135 485.7 583 52.0
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 4.9e-135 485.7 586 52.2
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 4.2e-134 482.6 581 53.9
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 7.1e-134 481.9 378 69.6
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 1.2e-133 481.1 701 45.9
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 1.6e-133 480.7 585 53.7
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 3.9e-132 476.1 616 51.0
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 6.7e-132 475.3 638 48.6
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 6.7e-132 475.3 589 48.7
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 1.5e-131 474.2 608 49.2
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 2.5e-131 473.4 339 70.2
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 3.3e-131 473.0 626 47.8
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 4.3e-131 472.6 586 49.5
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 3.7e-130 469.5 355 69.9
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 4.8e-130 469.2 340 65.9
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 1.1e-129 468.0 593 50.4
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 1.3e-127 461.1 636 49.2
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 6.4e-127 458.8 563 51.3
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 8.4e-127 458.4 306 70.9
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 2.4e-126 456.8 396 62.6
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 8.7e-124 448.4 574 51.2
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 5.6e-123 445.7 589 48.4
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 1.1e-121 441.4 650 43.5
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 3.4e-120 436.4 606 48.2
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 4.5e-120 436.0 446 56.1
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 5.8e-120 435.6 545 49.2
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 3.5e-117 426.4 680 42.1
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 1.5e-115 421.0 352 63.9
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 4.3e-115 419.5 577 48.0
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 1.8e-113 414.1 275 70.5
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 4.1e-113 412.9 625 45.6
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 4.5e-112 409.5 580 46.0
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 1.9e-110 404.1 396 58.1
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 9.3e-110 401.7 415 53.0
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.3e-108 397.9 502 48.8
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 2.3e-108 397.1 581 46.5
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 6.7e-108 395.6 455 50.1
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 6.7e-108 395.6 455 50.1
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 9.7e-107 391.7 351 59.8
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 1.7e-106 391.0 349 55.9
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 3.7e-106 389.8 668 40.4
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 8.2e-106 388.7 455 52.1
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 4.5e-104 382.9 455 51.4
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.2e-95 354.0 556 43.7
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 9.4e-94 348.6 645 40.9
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 1.6e-93 347.8 462 51.5
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 6.1e-93 345.9 637 41.3
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 3.0e-92 343.6 355 53.0
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 3.9e-92 343.2 299 61.5
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 8.2e-90 335.5 402 46.8
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 1.1e-81 308.5 365 52.6
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 1.2e-77 295.0 328 46.3
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 1.5e-75 288.1 595 37.1
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 2.8e-74 283.9 327 45.6
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 2.3e-71 274.2 326 42.0
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 2.9e-71 273.9 465 39.4
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 6.8e-68 262.7 283 54.8
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 2.7e-64 250.8 274 55.1
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 2.8e-53 214.2 263 44.5
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 1.7e-50 204.9 124 79.8
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 9.9e-43 179.1 378 32.3
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 2.4e-33 147.9 281 34.5
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 1.1e-30 139.0 93 75.3
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.8e-28 131.7 345 36.2
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 1.7e-26 125.2 185 41.1
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 4.9e-26 123.6 116 58.6
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 3.0e-23 114.4 73 74.0
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 8.7e-15 86.3 62 62.9
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.1e-14 85.9 71 53.5
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 3.7e-13 80.9 58 55.2
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 2.9e-10 71.2 53 64.2
Psat7g050000 Pisum sativum HOM05D005778 ORTHO05D007245 3.2e-09 67.8 177 35.6
Oeu028353.1 Olea europaea HOM05D005778 ORTHO05D007245 4.6e-08 63.9 45 68.9
CARHR113280 Cardamine hirsuta HOM05D000125 ORTHO05D009513 6.7e-07 60.1 37 64.9
Sabra05G0071600 Salix brachista HOM05D000786 ORTHO05D006216 2.5e-06 58.2 76 44.7
MSTRG.15763 Avicennia marina HOM05D005778 ORTHO05D038954 3.3e-06 57.8 355 27.0


User provided reference genes

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