Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 2.6e-234 815.1 422 100.0
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 3.2e-221 771.5 422 94.8
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 2.7e-215 751.9 422 91.5
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 7.7e-215 750.4 422 91.5
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 2.5e-213 745.3 422 91.7
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 8.0e-212 740.3 419 89.5
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 1.0e-211 740.0 422 89.8
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 4.0e-211 738.0 422 89.3
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 6.8e-211 737.3 419 90.0
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 6.8e-211 737.3 422 88.9
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.2e-210 736.5 422 88.9
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 2.6e-210 735.3 419 89.7
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 2.6e-210 735.3 422 89.3
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 3.4e-210 734.9 422 87.7
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 3.4e-210 734.9 422 89.1
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 7.5e-210 733.8 422 88.6
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 7.5e-210 733.8 418 89.2
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 9.8e-210 733.4 419 89.5
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 9.8e-210 733.4 422 88.6
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 1.7e-209 732.6 422 89.3
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 2.2e-209 732.3 422 88.6
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.8e-209 731.9 431 87.7
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 6.3e-209 730.7 419 88.8
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 6.3e-209 730.7 421 89.1
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 8.3e-209 730.3 419 89.3
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 8.3e-209 730.3 421 89.1
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 1.4e-208 729.6 422 88.4
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 1.4e-208 729.6 422 88.6
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 1.4e-208 729.6 422 87.7
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 1.8e-208 729.2 422 88.6
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 1.8e-208 729.2 421 88.1
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 3.1e-208 728.4 420 88.3
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 1.2e-207 726.5 453 84.8
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 2.0e-207 725.7 419 87.8
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 2.0e-207 725.7 422 87.9
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 2.0e-207 725.7 420 87.9
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 2.7e-207 725.3 419 88.5
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 3.5e-207 724.9 421 89.1
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 4.5e-207 724.5 422 87.4
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 7.7e-207 723.8 422 88.4
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 1.0e-206 723.4 422 87.7
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 5.0e-206 721.1 418 88.5
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 6.5e-206 720.7 421 88.4
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 6.5e-206 720.7 420 86.7
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 6.5e-206 720.7 420 86.7
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 6.5e-206 720.7 420 86.7
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 1.9e-205 719.2 418 87.1
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 2.5e-205 718.8 420 86.9
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 2.5e-205 718.8 420 86.7
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 3.2e-205 718.4 422 86.5
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 4.2e-205 718.0 422 86.7
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 5.5e-205 717.6 418 86.8
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 7.2e-205 717.2 422 87.4
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 9.5e-205 716.8 422 86.3
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 9.5e-205 716.8 418 87.6
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 1.2e-204 716.5 422 86.5
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 2.1e-204 715.7 419 87.1
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 2.1e-204 715.7 422 87.0
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 2.8e-204 715.3 422 86.5
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 2.8e-204 715.3 422 86.5
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 3.6e-204 714.9 422 86.5
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 4.7e-204 714.5 422 86.5
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 4.7e-204 714.5 422 86.5
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 4.7e-204 714.5 422 86.5
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 4.7e-204 714.5 422 86.5
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 4.7e-204 714.5 418 86.8
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 1.0e-203 713.4 419 87.8
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 1.0e-203 713.4 439 85.4
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 1.0e-203 713.4 418 86.8
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 1.8e-203 712.6 422 86.3
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 1.8e-203 712.6 422 86.7
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 1.8e-203 712.6 422 86.7
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 2.3e-203 712.2 422 86.3
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 3.0e-203 711.8 422 86.0
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 3.0e-203 711.8 418 86.8
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 3.0e-203 711.8 419 86.4
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 5.2e-203 711.1 422 86.3
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 6.8e-203 710.7 419 86.4
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 8.8e-203 710.3 422 86.0
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 8.8e-203 710.3 422 85.8
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 1.2e-202 709.9 422 85.5
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 1.5e-202 709.5 422 86.0
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 1.5e-202 709.5 422 86.0
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 2.0e-202 709.1 419 86.2
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 3.4e-202 708.4 422 85.5
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 3.4e-202 708.4 418 87.1
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 9.8e-202 706.8 418 87.1
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 1.3e-201 706.4 470 79.1
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 1.3e-201 706.4 470 79.1
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 1.3e-201 706.4 422 84.6
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 1.7e-201 706.1 418 85.9
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.2e-201 705.7 437 83.1
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 2.2e-201 705.7 422 86.3
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 2.2e-201 705.7 418 86.4
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 3.7e-201 704.9 418 87.3
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 4.9e-201 704.5 430 83.7
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 4.9e-201 704.5 418 86.1
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 6.3e-201 704.1 418 85.2
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 6.3e-201 704.1 422 86.0
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 8.3e-201 703.7 422 85.5
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 1.1e-200 703.4 422 86.0
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 2.4e-200 702.2 418 85.6
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 3.1e-200 701.8 418 85.4
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 4.1e-200 701.4 451 82.3
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 5.4e-200 701.0 437 83.3
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 5.4e-200 701.0 422 85.1
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 2.0e-199 699.1 422 86.7
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 2.7e-199 698.7 419 85.2
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 2.7e-199 698.7 418 85.4
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 2.7e-199 698.7 422 84.1
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 2.9e-198 695.3 431 84.2
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 3.8e-198 694.9 422 83.2
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 5.0e-198 694.5 422 83.6
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 1.2e-196 689.9 422 83.4
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.4e-195 686.4 424 83.3
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 6.8e-195 684.1 422 81.8
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 4.1e-192 674.9 428 80.6
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 7.8e-191 670.6 422 83.4
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 1.2e-188 663.3 388 87.1
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 1.2e-188 663.3 374 89.0
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 2.0e-186 656.0 472 75.8
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 3.4e-186 655.2 412 81.1
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 4.4e-186 654.8 501 70.9
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 4.4e-186 654.8 420 81.0
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 8.3e-185 650.6 416 82.5
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 3.9e-182 641.7 389 84.3
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 4.3e-181 638.3 377 84.1
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 2.8e-180 635.6 372 85.8
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 2.6e-178 629.0 363 87.9
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 1.7e-177 626.3 405 78.5
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 1.9e-176 622.9 397 78.6
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 3.1e-171 605.5 415 74.7
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 2.0e-170 602.8 422 76.1
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 1.7e-166 589.7 397 73.0
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.1e-165 587.0 410 76.6
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 1.8e-163 579.7 331 88.2
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 9.6e-157 557.4 310 91.9
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 1.3e-145 520.4 401 65.8
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 2.2e-145 519.6 411 64.0
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 1.3e-140 503.8 410 62.7
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 8.4e-137 491.1 459 62.7
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 2.7e-135 486.1 284 85.6
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 3.0e-134 482.6 280 90.0
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 1.8e-126 456.8 392 66.6
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 9.1e-123 444.5 260 86.2
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 2.8e-116 422.9 243 90.1
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 1.8e-110 403.7 236 83.5
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 5.0e-105 385.6 224 85.7
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.1e-99 367.9 244 77.5
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 2.7e-95 353.2 205 87.8
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 6.8e-86 322.0 287 63.1
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 6.2e-71 272.3 296 50.7
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 2.4e-67 260.4 207 65.7
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 1.9e-64 250.8 147 83.7
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 2.1e-58 230.7 189 60.8
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 3.0e-49 200.3 180 66.1
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 1.9e-48 197.6 133 71.4
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 2.6e-45 187.2 114 89.5
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 2.7e-42 177.2 119 71.4
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 1.8e-38 164.5 161 59.0
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 2.9e-36 157.1 290 35.9
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 2.4e-35 154.1 106 73.6
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 1.6e-34 151.4 157 59.9
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 2.1e-34 151.0 157 59.2
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 6.9e-30 136.0 80 85.0
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 4.2e-27 126.7 179 39.1
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 1.9e-24 117.9 149 49.7
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 9.0e-22 109.0 68 79.4
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 1.5e-16 91.7 98 56.1
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 2.6e-13 80.9 50 90.0
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 1.7e-12 78.2 53 81.1
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 1.2e-10 72.0 40 92.5
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 3.6e-10 70.5 62 56.5
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 1.4e-09 68.6 37 86.5
Pp3c2_3730 Physcomitrium patens HOM05D002061 ORTHO05D002849 2.5e-08 64.3 421 23.5
MELO3C010675.2 Cucumis melo HOM05D002061 ORTHO05D002849 1.3e-07 62.0 416 24.3
CsaV3_2G024770 Cucumis sativus L. HOM05D002061 ORTHO05D002849 1.3e-07 62.0 416 24.3
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 1.7e-07 61.6 112 33.9
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 1.7e-07 61.6 416 23.3
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 1.7e-07 61.6 416 24.8
Nitab4.5_0004112g0010 Nicotiana tabacum HOM05D002061 ORTHO05D002849 2.2e-07 61.2 418 25.4
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 3.7e-07 60.5 203 28.1
ECA234G3088 Erigeron canadensis HOM05D002061 ORTHO05D002849 8.2e-07 59.3 419 23.4
Nitab4.5_0000338g0010 Nicotiana tabacum HOM05D002061 ORTHO05D002849 8.2e-07 59.3 418 24.9
Solyc05g005160.3 Solanum lycopersicum HOM05D002061 ORTHO05D002849 8.2e-07 59.3 418 24.9
CANSAT01G1577 Cannabis sativa HOM05D002061 ORTHO05D002849 6.9e-06 56.2 416 23.8


User provided reference genes

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