Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G000066 Manihot esculenta HOM05D002653 ORTHO05D002623 1.4e-81 306.2 157 100.0
Manes.11G165700 Manihot esculenta HOM05D002653 ORTHO05D002623 1.4e-68 263.1 186 78.5
Manes.09G076300 Manihot esculenta HOM05D002653 ORTHO05D002623 1.0e-66 256.9 186 76.9
Potri.001G455600 Populus trichocarpa HOM05D002653 ORTHO05D002623 4.6e-56 221.5 186 64.0
Sabra16G0308200 Salix brachista HOM05D002653 ORTHO05D002623 4.6e-56 221.5 186 64.0
Ciclev10012577m.g Citrus clementina HOM05D002653 ORTHO05D002623 1.3e-45 186.8 187 57.8
GSVIVG01019371001 Vitis vinifera HOM05D002653 ORTHO05D002623 1.7e-45 186.4 187 55.6
Carub.0006s2259 Capsella rubella HOM05D002653 ORTHO05D002623 4.8e-45 184.9 187 56.7
Hma1.2p1_1074F.1_g254380 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 4.8e-45 184.9 187 55.6
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 1.8e-44 183.0 188 56.4
Thhalv10003500m.g Eutrema salsugineum HOM05D002653 ORTHO05D002623 1.8e-44 183.0 187 56.1
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 4.1e-44 181.8 184 56.0
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 6.9e-44 181.0 187 54.5
CAN.G690.1 Capsicum annuum HOM05D002653 ORTHO05D002623 1.2e-43 180.3 184 55.4
Sopen11g020620 Solanum pennellii HOM05D002653 ORTHO05D002623 1.5e-43 179.9 184 55.4
BcaNung01253 Brassica carinata HOM05D002653 ORTHO05D002623 2.0e-43 179.5 187 54.0
Medtr2g007250 Medicago truncatula HOM05D002653 ORTHO05D002623 2.6e-43 179.1 184 56.0
Aa31LG11G3960 Aethionema arabicum HOM05D002653 ORTHO05D002623 3.4e-43 178.7 187 55.1
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 7.7e-43 177.6 187 54.5
C07p42990 Brassica napus HOM05D002653 ORTHO05D002623 1.0e-42 177.2 187 54.0
BolC7t44828H Brassica oleracea HOM05D002653 ORTHO05D002623 1.0e-42 177.2 187 54.0
A06p35550 Brassica napus HOM05D002653 ORTHO05D002623 1.3e-42 176.8 187 54.0
BraA06t26480Z Brassica rapa HOM05D002653 ORTHO05D002623 1.3e-42 176.8 187 54.0
MELO3C010033.2 Cucumis melo HOM05D002653 ORTHO05D002623 1.3e-42 176.8 184 54.3
Sed0013773 Sechium edule HOM05D002653 ORTHO05D002623 1.3e-42 176.8 187 55.6
arahy.Tifrunner.gnm1.ann1.G9A448 Arachis hypogaea HOM05D002653 ORTHO05D002623 1.7e-42 176.4 184 56.0
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 1.7e-42 176.4 189 51.3
Migut.L00787 Erythranthe guttata HOM05D002653 ORTHO05D002623 2.2e-42 176.0 187 54.0
Phvul.002G234312 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 2.9e-42 175.6 184 56.5
Oeu013190.1 Olea europaea HOM05D002653 ORTHO05D002623 3.8e-42 175.3 187 54.0
TWI34G1636 Tripterygium wilfordii HOM05D002653 ORTHO05D002623 5.0e-42 174.9 187 54.0
ECA233G1976 Erigeron canadensis HOM05D002653 ORTHO05D002623 6.5e-42 174.5 187 51.3
Glyma.13G174600 Glycine max HOM05D002653 ORTHO05D002623 8.5e-42 174.1 184 55.4
AL6G36330 Arabidopsis lyrata HOM05D002653 ORTHO05D002623 1.1e-41 173.7 189 55.0
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 1.1e-41 173.7 187 52.9
PGR044G0026 Punica granatum HOM05D002653 ORTHO05D002623 1.4e-41 173.3 191 55.0
Lalb_Chr01g0009381 Lupinus albus HOM05D002653 ORTHO05D002623 1.9e-41 172.9 184 53.8
AT5G24740 Arabidopsis thaliana HOM05D002653 ORTHO05D002623 2.5e-41 172.6 179 55.3
CSS0038262 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 4.2e-41 171.8 178 54.5
Lj4g0020533 Lotus japonicus HOM05D002653 ORTHO05D002623 4.2e-41 171.8 184 53.8
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 4.2e-41 171.8 225 47.1
Psat0s3513g0080 Pisum sativum HOM05D002653 ORTHO05D002623 5.5e-41 171.4 184 53.8
FAN09G4442 Fragaria x ananassa HOM05D002653 ORTHO05D002623 7.2e-41 171.0 182 53.8
LjContig00141g0016117 Lotus japonicus HOM05D002653 ORTHO05D002623 7.2e-41 171.0 184 53.8
FvH4_6g36300 Fragaria vesca HOM05D002653 ORTHO05D002623 9.4e-41 170.6 182 53.8
FAN14G0870 Fragaria x ananassa HOM05D002653 ORTHO05D002623 9.4e-41 170.6 182 53.8
FAN14G5588 Fragaria x ananassa HOM05D002653 ORTHO05D002623 9.4e-41 170.6 182 53.8
MD17G1156800 Malus domestica HOM05D002653 ORTHO05D002623 9.4e-41 170.6 185 55.1
Lsat_1_v5_gn_6_56501 Lactuca sativa HOM05D002653 ORTHO05D002623 1.2e-40 170.2 191 50.3
Psat2g178200 Pisum sativum HOM05D002653 ORTHO05D002623 2.1e-40 169.5 184 52.7
Sc15g0007450 Simmondsia chinensis HOM05D002653 ORTHO05D002623 2.1e-40 169.5 187 52.4
THA.LOC104814962 Tarenaya hassleriana HOM05D002653 ORTHO05D002623 2.1e-40 169.5 187 52.9
Thecc.01G150000 Theobroma cacao HOM05D002653 ORTHO05D002623 2.7e-40 169.1 187 50.8
FAN02G0462 Fragaria x ananassa HOM05D002653 ORTHO05D002623 3.6e-40 168.7 182 53.3
MSTRG.8096 Avicennia marina HOM05D002653 ORTHO05D002623 4.7e-40 168.3 187 51.9
Gohir.D04G020301 Gossypium hirsutum HOM05D002653 ORTHO05D002623 1.8e-39 166.4 188 49.5
Gorai.012G024100 Gossypium raimondii HOM05D002653 ORTHO05D002623 1.8e-39 166.4 188 49.5
COL.COLO4_33574 Corchorus olitorius HOM05D002653 ORTHO05D002623 3.0e-39 165.6 187 50.8
CSS0026519 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 5.2e-39 164.9 166 56.0
Gohir.A05G394600 Gossypium hirsutum HOM05D002653 ORTHO05D002623 8.8e-39 164.1 188 48.9
Prupe.3G028500 Prunus persica HOM05D002653 ORTHO05D002623 1.5e-38 163.3 185 51.9
RcHm_v2.0_Chr2g0148301 Rosa chinensis HOM05D002653 ORTHO05D002623 1.5e-38 163.3 185 51.9
EL10Ac1g01415 Beta vulgaris HOM05D002653 ORTHO05D002623 7.4e-38 161.0 187 51.3
QL04p064992 Quercus lobata HOM05D002653 ORTHO05D002623 1.3e-37 160.2 185 50.3
Duzib114G0204 Durio zibethinus HOM05D002653 ORTHO05D002623 2.2e-37 159.5 187 48.7
Cc11_g00310 Coffea canephora HOM05D002653 ORTHO05D002623 4.8e-37 158.3 180 51.1
Migut.L00841 Erythranthe guttata HOM05D002653 ORTHO05D002623 4.8e-37 158.3 185 49.7
PSO782G1285 Papaver somniferum HOM05D002653 ORTHO05D002623 1.6e-35 153.3 178 48.3
PSO063G3289 Papaver somniferum HOM05D002653 ORTHO05D002623 2.6e-35 152.5 178 48.3
TPR.G8155 Trifolium pratense HOM05D002653 ORTHO05D002623 4.5e-35 151.8 139 61.2
CDE12G0934 Ceratophyllum demersum HOM05D002653 ORTHO05D002623 6.5e-34 147.9 131 61.8
CsaV3_1G044340 Cucumis sativus L. HOM05D002653 ORTHO05D002623 6.5e-34 147.9 125 63.2
Zm00001eb260910 Zea mays HOM05D002653 ORTHO05D002623 8.5e-34 147.5 181 45.9
CiPaw.06G000200 Carya illinoinensis HOM05D002653 ORTHO05D002623 2.1e-32 142.9 127 59.8
HanXRQChr07g0186761 Helianthus annuus HOM05D002653 ORTHO05D002623 2.1e-32 142.9 138 58.0
Peaxi162Scf00126g00051 Petunia axillaris HOM05D002653 ORTHO05D002623 3.6e-32 142.1 181 46.4
Os08g0116700 Oryza sativa ssp. japonica HOM05D002653 ORTHO05D002623 1.4e-31 140.2 181 45.9
AUR62026805 Chenopodium quinoa HOM05D002653 ORTHO05D002623 3.0e-31 139.0 192 46.9
Solyc11g045140.1 Solanum lycopersicum HOM05D002653 ORTHO05D002623 4.0e-31 138.7 127 58.3
vmacro03484 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 2.6e-30 136.0 127 56.7
Nitab4.5_0006025g0020 Nicotiana tabacum HOM05D002653 ORTHO05D002623 4.4e-30 135.2 127 55.9
AUR62013467 Chenopodium quinoa HOM05D002653 ORTHO05D002623 1.3e-29 133.7 184 45.1
Nitab4.5_0004202g0010 Nicotiana tabacum HOM05D002653 ORTHO05D002623 1.7e-29 133.3 127 55.1
unitig_8.g3109 Utricularia gibba HOM05D002653 ORTHO05D002623 2.2e-29 132.9 151 51.7
FAN05G4926 Fragaria x ananassa HOM05D002653 ORTHO05D002623 3.7e-29 132.1 125 56.0
Eucgr.K01358 Eucalyptus grandis HOM05D002653 ORTHO05D002623 6.3e-29 131.3 125 58.4
Aqoxy2G01525 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 1.4e-28 130.2 167 47.9
ATR1155G033 Amborella trichopoda HOM05D002653 ORTHO05D002623 9.1e-28 127.5 195 44.1
VMungo0251G2657 Vigna mungo HOM05D002653 ORTHO05D002623 9.1e-28 127.5 309 34.0
HPP92_001359 Vanilla planifolia HOM05D002653 ORTHO05D002623 1.6e-27 126.7 180 43.9
Phvul.002G328604 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 2.9e-26 122.5 141 55.3
SMO353G0260 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 2.9e-26 122.5 181 38.7
Mapoly0009s0011 Marchantia polymorpha HOM05D002653 ORTHO05D002623 1.1e-25 120.6 181 38.1
Pp3c15_25690 Physcomitrium patens HOM05D002653 ORTHO05D002623 1.2e-24 117.1 181 38.1
Nitab4.5_0002474g0040 Nicotiana tabacum HOM05D002653 ORTHO05D002623 2.8e-21 105.9 85 67.1
Psat5g290960 Pisum sativum HOM05D000001 ORTHO05D001705 4.8e-21 105.1 180 40.0
ClCG03G010430 Citrullus lanatus HOM05D002653 ORTHO05D002623 8.3e-21 104.4 82 67.1
CBR_g4651 Chara braunii HOM05D002653 ORTHO05D002623 6.5e-18 94.7 127 39.4
Atru.chr8.1040 Acer truncatum HOM05D002653 ORTHO05D002623 7.2e-17 91.3 159 39.0
Nitab4.5_0020732g0010 Nicotiana tabacum HOM05D002653 ORTHO05D002623 2.1e-16 89.7 97 47.4
Nitab4.5_0004950g0030 Nicotiana tabacum HOM05D002653 ORTHO05D002623 2.2e-13 79.7 116 38.8
Cre17.g727600 Chlamydomonas reinhardtii HOM05D002653 ORTHO05D002623 2.9e-10 69.3 126 40.5
Nitab4.5_0004950g0050 Nicotiana tabacum HOM05D002653 ORTHO05D002623 9.5e-09 64.3 35 82.9
Psat0s45g0120 Pisum sativum HOM05D001092 ORTHO05D000923 5.2e-07 58.5 166 26.5
HPP92_001397 Vanilla planifolia HOM05D002653 ORTHO05D002623 5.2e-07 58.5 148 33.1
Pp3c22_21110 Physcomitrium patens HOM05D001092 ORTHO05D000923 8.9e-07 57.8 163 27.6
CiPaw.12G058400 Carya illinoinensis HOM05D001092 ORTHO05D000923 2.0e-06 56.6 160 24.4
Thhalv10024176m.g Eutrema salsugineum HOM05D001092 ORTHO05D000923 2.0e-06 56.6 164 26.2
AUR62007201 Chenopodium quinoa HOM05D001092 ORTHO05D000923 2.6e-06 56.2 161 24.8
RcHm_v2.0_Chr7g0207821 Rosa chinensis HOM05D001092 ORTHO05D000923 2.6e-06 56.2 160 23.8
TPR.G12636 Trifolium pratense HOM05D001092 ORTHO05D000923 2.6e-06 56.2 165 26.1
AagrBONN_evm.TU.Sc2ySwM_362.1817 Anthoceros agrestis HOM05D001092 ORTHO05D000923 3.4e-06 55.8 167 25.1
AUR62018801 Chenopodium quinoa HOM05D001092 ORTHO05D000923 3.4e-06 55.8 161 24.2
Pp3c9_20320 Physcomitrium patens HOM05D001092 ORTHO05D000923 3.4e-06 55.8 168 26.2
arahy.Tifrunner.gnm1.ann1.AIIC2U Arachis hypogaea HOM05D001092 ORTHO05D000923 4.4e-06 55.5 162 24.7
MELO3C003359.2 Cucumis melo HOM05D001092 ORTHO05D000923 4.4e-06 55.5 163 26.4
Phvul.003G119100 Phaseolus vulgaris HOM05D001092 ORTHO05D000923 4.4e-06 55.5 165 26.1
FvH4_5g20820 Fragaria vesca HOM05D001092 ORTHO05D000923 5.8e-06 55.1 160 23.8
Glyma.07G233100 Glycine max HOM05D001092 ORTHO05D000923 5.8e-06 55.1 165 25.5
Prupe.5G050700 Prunus persica HOM05D001092 ORTHO05D000923 5.8e-06 55.1 164 25.0
Sp7g17050 Schrenkiella parvula HOM05D001092 ORTHO05D000923 5.8e-06 55.1 162 24.7
Cc08_g01550 Coffea canephora HOM05D001092 ORTHO05D000923 7.5e-06 54.7 161 26.7
DCAR_026963 Daucus carota HOM05D001092 ORTHO05D000923 7.5e-06 54.7 165 24.8
Lalb_Chr13g0298841 Lupinus albus HOM05D001092 ORTHO05D000923 7.5e-06 54.7 165 26.7
Solyc11g045160.3 Solanum lycopersicum HOM05D002653 ORTHO05D002623 7.5e-06 54.7 47 57.4
AL2G24800 Arabidopsis lyrata HOM05D002653 ORTHO05D002623 9.8e-06 54.3 116 39.7
A08p12900 Brassica napus HOM05D001092 ORTHO05D000923 9.8e-06 54.3 164 25.0
BraA08t33273Z Brassica rapa HOM05D001092 ORTHO05D000923 9.8e-06 54.3 164 25.0
Cfa027332 Carpinus fangiana HOM05D001092 ORTHO05D000923 9.8e-06 54.3 115 28.7
Ca_21394_v3 Cicer arietinum L. HOM05D001092 ORTHO05D000923 9.8e-06 54.3 165 26.1
MD04G1057200 Malus domestica HOM05D001092 ORTHO05D000923 9.8e-06 54.3 159 23.3
MD06G1043800 Malus domestica HOM05D001092 ORTHO05D000923 9.8e-06 54.3 163 24.5
Medtr4g123110 Medicago truncatula HOM05D001092 ORTHO05D000923 9.8e-06 54.3 165 25.5


User provided reference genes

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