Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 8.0e-211 736.9 382 100.0
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 2.1e-171 605.9 382 83.0
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 1.1e-170 603.6 382 82.7
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 5.2e-170 601.3 380 84.2
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 9.9e-169 597.0 382 82.7
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 1.1e-167 593.6 386 82.6
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.2e-166 590.1 380 82.4
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 3.9e-165 585.1 378 81.5
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 1.9e-164 582.8 357 83.5
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 5.6e-164 581.3 353 84.1
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 5.6e-164 581.3 380 79.7
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 7.3e-164 580.9 357 83.2
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 9.6e-164 580.5 359 83.3
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.6e-163 579.7 380 80.0
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 2.1e-163 579.3 376 80.9
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 3.6e-163 578.6 376 81.1
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 4.8e-163 578.2 356 83.7
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 1.1e-162 577.0 348 85.3
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 1.1e-162 577.0 356 83.4
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 2.6e-161 572.4 382 79.3
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 2.6e-161 572.4 458 70.3
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.4e-161 572.0 382 79.6
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 4.4e-161 571.6 377 79.8
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 4.4e-161 571.6 326 88.7
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 9.9e-161 570.5 348 84.5
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 9.9e-161 570.5 382 79.8
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 2.9e-160 568.9 381 79.8
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 2.9e-160 568.9 384 79.4
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 2.9e-160 568.9 354 82.2
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 3.8e-160 568.5 381 80.1
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 3.8e-160 568.5 381 79.5
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 4.9e-160 568.2 379 78.9
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 6.4e-160 567.8 384 79.2
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 8.4e-160 567.4 357 82.1
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.1e-159 567.0 357 82.4
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 1.4e-159 566.6 396 76.8
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.2e-159 565.5 353 83.0
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.2e-159 565.5 353 83.0
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 7.1e-159 564.3 370 80.3
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 9.3e-159 563.9 343 85.1
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 9.3e-159 563.9 323 87.9
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 1.6e-158 563.1 387 77.0
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 1.6e-158 563.1 383 78.6
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 2.7e-158 562.4 364 80.8
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 2.7e-158 562.4 375 79.5
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 3.5e-158 562.0 381 77.4
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 3.5e-158 562.0 382 77.7
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 1.0e-157 560.5 354 81.6
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 1.3e-157 560.1 323 87.6
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.3e-157 560.1 383 77.5
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 1.3e-157 560.1 358 80.2
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 2.3e-157 559.3 384 78.1
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 3.0e-157 558.9 389 77.6
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 6.6e-157 557.8 357 81.0
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 8.7e-157 557.4 332 83.7
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 1.1e-156 557.0 334 84.7
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.9e-156 556.2 353 81.6
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 2.5e-156 555.8 357 81.2
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.5e-156 555.8 353 81.0
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 2.5e-156 555.8 369 79.7
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 3.3e-156 555.4 357 80.4
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 3.3e-156 555.4 345 82.6
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 3.3e-156 555.4 358 79.3
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 4.3e-156 555.1 357 81.5
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 4.3e-156 555.1 357 81.5
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 4.3e-156 555.1 344 83.4
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 5.6e-156 554.7 350 80.6
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 7.3e-156 554.3 383 77.5
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 7.3e-156 554.3 358 79.1
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 9.6e-156 553.9 343 83.7
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 9.6e-156 553.9 338 85.2
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 1.6e-155 553.1 444 70.0
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 1.6e-155 553.1 357 81.2
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 2.1e-155 552.7 380 77.6
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 2.8e-155 552.4 358 79.1
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 3.6e-155 552.0 370 78.1
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.6e-155 552.0 370 78.1
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 3.6e-155 552.0 331 85.8
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 3.6e-155 552.0 381 77.7
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 4.8e-155 551.6 357 80.1
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 4.8e-155 551.6 326 85.0
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 6.2e-155 551.2 357 80.1
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 6.2e-155 551.2 353 80.7
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 8.1e-155 550.8 357 81.0
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 1.1e-154 550.4 357 80.4
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.4e-154 549.3 354 81.4
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 2.4e-154 549.3 326 86.2
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 3.1e-154 548.9 357 80.7
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 3.1e-154 548.9 351 80.1
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 3.1e-154 548.9 322 86.0
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 4.0e-154 548.5 357 79.8
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 5.3e-154 548.1 360 78.1
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 5.3e-154 548.1 327 85.9
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 6.9e-154 547.7 355 79.7
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 6.9e-154 547.7 353 79.9
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 9.0e-154 547.4 353 80.5
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 9.0e-154 547.4 353 80.5
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 9.0e-154 547.4 375 76.5
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 1.2e-153 547.0 356 80.1
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 1.5e-153 546.6 356 79.8
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 2.6e-153 545.8 352 78.7
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 4.5e-153 545.0 356 80.1
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.5e-153 545.0 347 80.4
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 5.8e-153 544.7 356 80.1
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 7.6e-153 544.3 367 77.7
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 4.9e-152 541.6 357 78.4
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 4.9e-152 541.6 356 79.8
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 4.9e-152 541.6 356 79.8
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.9e-151 539.7 357 79.3
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 3.2e-151 538.9 356 78.7
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.6e-150 536.6 374 77.3
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 2.1e-150 536.2 318 85.2
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 3.5e-150 535.4 356 77.2
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.5e-150 535.4 370 76.8
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.5e-150 535.4 370 76.8
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 4.6e-150 535.0 363 76.9
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 2.3e-149 532.7 371 75.5
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 3.0e-149 532.3 381 74.8
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 1.5e-148 530.0 375 75.5
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 1.5e-148 530.0 471 63.5
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.3e-148 528.5 385 72.7
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 1.6e-147 526.6 356 76.4
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 3.7e-147 525.4 354 77.7
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 6.2e-147 524.6 354 77.7
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 1.8e-146 523.1 356 75.6
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 1.8e-146 523.1 356 75.6
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 2.4e-146 522.7 362 76.2
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.1e-143 513.8 300 86.0
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.5e-143 512.7 326 79.8
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 7.1e-143 511.1 322 81.4
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 9.3e-143 510.8 357 76.5
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 1.6e-142 510.0 287 89.2
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 6.0e-142 508.1 359 74.7
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.3e-141 506.9 287 89.2
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 7.4e-140 501.1 340 76.2
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 2.4e-138 496.1 339 76.1
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 6.5e-136 488.0 356 73.6
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 7.1e-135 484.6 347 74.9
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 5.1e-133 478.4 351 71.5
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 8.7e-133 477.6 350 70.9
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 2.5e-132 476.1 325 75.1
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.5e-132 476.1 309 80.6
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 4.8e-131 471.9 301 78.7
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 8.2e-131 471.1 341 70.7
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.1e-130 470.7 312 76.3
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 3.4e-129 465.7 299 78.9
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 1.6e-126 456.8 336 70.2
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 5.9e-113 411.8 297 71.0
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 7.2e-111 404.8 259 83.0
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 1.0e-109 401.0 345 61.7
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 7.4e-108 394.8 260 80.8
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 1.7e-107 393.7 250 80.8
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 5.4e-98 362.1 290 64.5
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 2.6e-92 343.2 256 72.3
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 9.8e-84 314.7 299 61.5
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 1.7e-72 277.3 202 75.2
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 5.6e-71 272.3 309 51.5
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 2.1e-70 270.4 195 74.4
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 4.7e-70 269.2 383 47.0
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 2.1e-49 200.7 112 84.8
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 4.3e-47 193.0 113 86.7
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 1.1e-39 168.3 171 59.6
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 1.1e-39 168.3 171 59.6
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 1.1e-39 168.3 171 59.6
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 1.9e-34 151.0 104 73.1
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 3.2e-34 150.2 330 33.3
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 1.2e-33 148.3 102 74.5
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 1.2e-33 148.3 102 74.5
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 7.9e-33 145.6 102 73.5
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 1.8e-32 144.4 98 74.5
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 3.0e-32 143.7 106 70.8
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 2.1e-30 137.5 107 65.4
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 1.4e-29 134.8 106 66.0
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 2.9e-19 100.5 64 78.1
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 3.2e-18 97.1 67 77.6
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 4.6e-17 93.2 91 60.4
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 6.1e-17 92.8 61 83.6
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 7.9e-09 65.9 38 76.3
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 8.8e-08 62.4 38 73.7


User provided reference genes

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