Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 3.3e-159 565.1 307 100.0
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 1.1e-133 480.3 308 79.9
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 5.4e-133 478.0 308 79.5
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 5.4e-133 478.0 308 79.5
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.7e-132 475.7 308 79.2
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 7.8e-132 474.2 309 80.9
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 5.0e-131 471.5 309 80.3
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 8.6e-131 470.7 305 80.7
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 5.6e-130 468.0 314 77.7
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 6.2e-129 464.5 307 78.8
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 3.1e-128 462.2 310 77.1
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 3.1e-128 462.2 309 76.4
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 3.1e-128 462.2 309 76.4
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 8.9e-128 460.7 309 76.4
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 8.3e-126 454.1 313 74.4
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 5.4e-125 451.4 349 68.5
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 5.4e-125 451.4 314 74.2
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 6.0e-124 448.0 311 74.0
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 2.3e-123 446.0 311 74.0
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 1.1e-122 443.7 311 73.6
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.1e-122 443.7 311 73.6
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 1.5e-122 443.4 311 74.3
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 1.2e-121 440.3 310 72.9
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 1.6e-121 439.9 314 74.2
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 8.1e-121 437.6 311 72.7
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 1.1e-120 437.2 306 74.5
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.1e-120 437.2 311 73.0
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 1.1e-120 437.2 311 73.0
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.8e-120 436.4 311 73.3
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 2.3e-120 436.0 316 72.5
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 5.2e-120 434.9 307 72.6
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 8.9e-120 434.1 307 72.6
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 8.9e-120 434.1 311 72.3
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 1.2e-119 433.7 316 72.2
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 1.2e-119 433.7 316 72.2
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 3.4e-119 432.2 316 72.5
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 4.4e-119 431.8 307 72.0
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 5.8e-119 431.4 309 78.3
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 7.5e-119 431.0 309 72.2
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 7.5e-119 431.0 311 72.0
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 3.7e-118 428.7 310 71.6
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 1.4e-117 426.8 311 71.1
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 2.4e-117 426.0 308 73.7
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 3.2e-117 425.6 308 71.8
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 3.2e-117 425.6 307 71.3
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 4.1e-117 425.2 310 71.9
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 4.1e-117 425.2 316 71.5
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 9.2e-117 424.1 309 71.2
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 1.6e-116 423.3 310 72.3
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 3.5e-116 422.2 309 71.5
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 3.5e-116 422.2 315 70.2
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 6.0e-116 421.4 323 67.5
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 6.0e-116 421.4 307 75.2
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 7.8e-116 421.0 312 70.2
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 1.0e-115 420.6 312 70.2
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.7e-115 419.9 311 72.3
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 2.3e-115 419.5 308 75.6
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 2.3e-115 419.5 312 69.6
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 6.6e-115 417.9 314 70.4
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 8.6e-115 417.5 309 71.8
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 8.6e-115 417.5 313 69.3
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 1.1e-114 417.2 311 69.1
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 1.9e-114 416.4 309 71.5
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 1.9e-114 416.4 309 71.5
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 2.5e-114 416.0 313 69.3
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 4.3e-114 415.2 308 69.2
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 7.3e-114 414.5 312 71.5
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 9.5e-114 414.1 315 69.8
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 1.6e-113 413.3 308 72.1
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 2.1e-113 412.9 316 70.9
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 2.1e-113 412.9 316 70.9
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 2.1e-113 412.9 316 70.9
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 2.8e-113 412.5 308 69.5
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 3.6e-113 412.1 307 72.3
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 3.6e-113 412.1 307 72.3
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 3.6e-113 412.1 307 71.7
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 3.6e-113 412.1 312 67.9
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 3.6e-113 412.1 315 68.9
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 6.2e-113 411.4 307 72.3
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 8.1e-113 411.0 345 63.5
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 2.3e-112 409.5 314 73.9
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 8.9e-112 407.5 304 70.1
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 1.5e-111 406.8 316 69.0
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 4.4e-111 405.2 316 67.1
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 7.6e-111 404.4 313 67.1
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 1.3e-110 403.7 309 68.3
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 1.3e-110 403.7 312 67.9
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 1.7e-110 403.3 270 78.9
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 2.9e-110 402.5 313 67.4
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 3.7e-110 402.1 317 66.9
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 8.4e-110 401.0 308 69.8
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.6e-108 396.7 309 68.0
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 7.8e-108 394.4 324 65.7
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 1.0e-107 394.0 313 67.4
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 7.3e-106 387.9 283 69.6
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 7.3e-106 387.9 314 66.6
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 2.8e-105 386.0 290 70.7
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.2e-103 380.6 224 85.7
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 2.9e-102 375.9 335 61.2
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 4.9e-102 375.2 335 60.9
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 1.2e-100 370.5 340 60.3
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 2.1e-100 369.8 253 75.1
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 1.0e-99 367.5 333 60.7
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 1.1e-96 357.5 231 79.2
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 5.3e-96 355.1 227 77.5
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 8.4e-94 347.8 309 63.1
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 1.9e-93 346.7 308 59.1
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 5.4e-93 345.1 203 84.7
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 7.1e-93 344.7 224 79.0
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.1e-92 343.2 266 67.7
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 1.1e-90 337.4 211 80.1
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 4.8e-89 332.0 317 54.9
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 5.3e-88 328.6 277 64.3
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 1.4e-85 320.5 307 58.0
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 4.6e-84 315.5 312 58.3
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 7.4e-82 308.1 313 56.2
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 4.5e-79 298.9 185 81.6
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 1.9e-69 266.9 294 52.7
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 1.6e-68 263.8 190 75.3
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 1.4e-64 250.8 233 62.2
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 6.9e-64 248.4 414 42.3
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 7.7e-63 245.0 382 41.9
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 3.0e-59 233.0 191 70.2
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 2.2e-49 200.3 312 44.6
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 1.6e-47 194.1 117 84.6
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 1.7e-46 190.7 224 47.8
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 2.7e-44 183.3 272 45.6
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 3.6e-44 183.0 192 53.6
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 3.3e-42 176.4 112 78.6
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 1.7e-41 174.1 220 45.5
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 5.9e-39 165.6 199 52.3
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.1e-37 161.4 95 86.3
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 8.0e-36 155.2 126 63.5
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 8.0e-36 155.2 126 63.5
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 8.0e-36 155.2 274 42.3
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 6.8e-35 152.1 96 82.3
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 8.3e-33 145.2 122 64.8
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 3.1e-32 143.3 93 81.7
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 1.6e-31 141.0 190 43.2
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 5.5e-29 132.5 80 83.8
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 5.7e-26 122.5 138 50.7
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 2.4e-24 117.1 231 38.1
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 4.3e-21 106.3 95 62.1
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.8e-20 103.6 63 84.1
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.3e-19 100.5 69 75.4
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.0e-11 75.1 42 78.6
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 2.0e-10 70.9 128 36.7
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 6.4e-09 65.9 42 61.9
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 9.2e-08 62.0 52 57.7
Eucgr.G01782 Eucalyptus grandis HOM05D002972 ORTHO05D002272 2.0e-07 60.8 39 64.1
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 2.7e-07 60.5 43 65.1
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 1.3e-06 58.2 57 61.4
Sed0017149 Sechium edule HOM05D002972 ORTHO05D002272 3.0e-06 57.0 38 63.2
MELO3C013346.2 Cucumis melo HOM05D002972 ORTHO05D002272 3.9e-06 56.6 38 63.2
FAN27G2301 Fragaria x ananassa HOM05D002972 ORTHO05D002272 5.0e-06 56.2 37 56.8
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 5.0e-06 56.2 62 54.8
RcHm_v2.0_Chr6g0278431 Rosa chinensis HOM05D002972 ORTHO05D002272 6.6e-06 55.8 55 43.6
CsaV3_7G001090 Cucumis sativus L. HOM05D002972 ORTHO05D002272 8.6e-06 55.5 38 60.5
Duzib248G0175 Durio zibethinus HOM05D002972 ORTHO05D002272 8.6e-06 55.5 38 57.9
Sed0027632 Sechium edule HOM05D002972 ORTHO05D002272 8.6e-06 55.5 38 57.9


User provided reference genes

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