Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 8.2e-188 660.2 330 100.0
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 8.0e-167 590.5 333 88.0
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 1.0e-150 537.0 333 80.2
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 6.8e-150 534.3 332 80.4
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 4.1e-147 525.0 331 79.8
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 2.0e-146 522.7 331 79.5
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 1.3e-145 520.0 325 80.3
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 1.7e-145 519.6 333 78.7
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 2.5e-144 515.8 334 77.8
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 3.3e-144 515.4 332 78.9
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 7.3e-144 514.2 334 77.8
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 3.6e-143 511.9 330 78.5
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 8.0e-143 510.8 332 78.3
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 6.8e-142 507.7 325 77.8
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 1.2e-141 506.9 340 78.5
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 3.7e-140 501.9 333 76.0
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.9e-140 501.5 333 77.8
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 3.2e-139 498.8 333 76.0
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 5.4e-139 498.0 331 75.5
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 7.8e-138 494.2 331 75.8
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 1.3e-137 493.4 333 74.2
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 2.3e-137 492.7 334 74.3
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 3.0e-137 492.3 333 74.8
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 3.9e-137 491.9 334 75.7
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 6.6e-137 491.1 334 74.0
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 1.1e-136 490.3 333 74.2
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 1.9e-136 489.6 336 75.6
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 9.5e-136 487.3 334 75.4
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.2e-135 486.9 320 78.8
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 1.6e-135 486.5 337 71.8
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.6e-135 486.5 335 74.9
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 2.1e-135 486.1 335 74.3
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 2.1e-135 486.1 338 73.7
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 3.6e-135 485.3 334 73.7
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 4.7e-135 485.0 338 74.9
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 4.7e-135 485.0 334 74.0
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 4.7e-135 485.0 335 72.8
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 4.7e-135 485.0 334 74.0
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 1.4e-134 483.4 340 72.1
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 1.4e-134 483.4 340 72.1
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 1.8e-134 483.0 335 73.4
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 4.0e-134 481.9 341 74.2
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.2e-133 480.3 333 73.9
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 1.2e-133 480.3 335 72.8
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.5e-133 479.9 333 73.3
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 2.0e-133 479.6 335 73.7
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 2.6e-133 479.2 335 73.7
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 2.6e-133 479.2 337 74.2
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 3.4e-133 478.8 334 74.0
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 4.4e-133 478.4 335 74.0
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 4.4e-133 478.4 335 73.7
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 7.5e-133 477.6 335 72.5
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 9.9e-133 477.2 334 73.4
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 9.9e-133 477.2 335 73.4
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 1.3e-132 476.9 335 72.8
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 1.3e-132 476.9 333 72.1
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 1.7e-132 476.5 340 72.6
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 2.2e-132 476.1 333 73.9
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 2.9e-132 475.7 334 72.8
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.1e-131 473.8 339 72.9
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 1.1e-131 473.8 335 72.5
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 1.4e-131 473.4 334 72.5
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.4e-131 473.4 333 72.1
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 1.9e-131 473.0 345 73.3
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 3.2e-131 472.2 337 73.3
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.1e-131 471.9 330 71.8
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 7.1e-131 471.1 330 72.1
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 4.6e-130 468.4 332 72.0
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 1.7e-129 466.5 336 71.7
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 1.7e-129 466.5 334 71.0
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 3.0e-129 465.7 326 72.4
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 3.9e-129 465.3 332 71.7
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 1.1e-128 463.8 339 71.1
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 1.1e-128 463.8 339 71.4
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 1.1e-128 463.8 339 70.2
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 2.5e-128 462.6 342 70.8
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 2.5e-128 462.6 335 69.9
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 4.3e-128 461.8 335 70.4
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 3.6e-127 458.8 332 70.5
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 4.7e-127 458.4 339 69.6
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 1.4e-126 456.8 339 69.6
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 1.8e-126 456.4 379 64.4
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 3.1e-126 455.7 328 70.7
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 4.0e-126 455.3 325 71.7
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 4.0e-126 455.3 325 71.7
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 4.0e-126 455.3 334 69.5
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 8.9e-126 454.1 337 70.9
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 2.6e-125 452.6 340 69.4
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 3.4e-125 452.2 331 68.3
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.7e-124 449.9 355 66.2
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 2.4e-123 446.0 344 68.6
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 7.8e-122 441.0 341 67.2
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 1.0e-121 440.7 339 69.0
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 2.5e-120 436.0 341 69.5
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 1.6e-119 433.3 342 67.8
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 1.4e-118 430.3 335 66.3
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 6.9e-118 427.9 339 65.8
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 1.2e-117 427.2 334 65.0
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 4.4e-117 425.2 340 66.8
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 7.6e-117 424.5 355 63.7
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 7.6e-117 424.5 355 63.7
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 1.7e-113 413.3 360 65.6
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 1.7e-113 413.3 331 65.9
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 4.3e-112 408.7 263 78.7
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 4.3e-112 408.7 352 63.9
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 1.6e-111 406.8 351 63.0
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 3.6e-111 405.6 360 62.2
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 1.3e-108 397.1 334 62.6
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 1.3e-103 380.6 341 57.5
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 1.1e-102 377.5 351 58.4
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 1.4e-102 377.1 334 60.2
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 9.0e-102 374.4 328 58.2
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 9.0e-102 374.4 281 69.0
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 2.6e-101 372.9 360 57.8
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 6.2e-95 351.7 323 62.2
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 6.2e-95 351.7 319 58.6
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 6.7e-89 331.6 229 73.4
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 3.6e-82 309.3 243 67.5
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 1.5e-77 293.9 208 71.6
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 5.0e-76 288.9 255 60.8
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 5.1e-73 278.9 352 46.3
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 4.8e-71 272.3 267 58.8
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 4.5e-69 265.8 185 70.8
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 5.5e-67 258.8 186 71.5
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.6e-61 240.7 353 42.5
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 1.9e-59 233.8 381 43.3
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 9.4e-59 231.5 355 40.8
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 6.8e-57 225.3 354 43.5
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 9.8e-56 221.5 216 56.0
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 3.1e-54 216.5 340 42.4
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 9.4e-51 204.9 226 52.7
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 5.4e-46 189.1 176 52.3
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 3.6e-42 176.4 357 36.4
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.0e-36 158.3 371 32.6
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 7.3e-35 152.1 344 36.0
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 3.0e-28 130.2 117 63.2
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 9.5e-27 125.2 147 50.3
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 1.2e-26 124.8 128 52.3
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.8e-25 120.9 85 69.4
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 8.9e-25 118.6 122 47.5
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 1.5e-24 117.9 354 31.4
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 3.4e-24 116.7 125 47.2
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 4.4e-24 116.3 99 57.6
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 2.9e-23 113.6 122 45.9
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 1.1e-19 101.7 55 85.5
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 2.5e-19 100.5 149 34.2
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 5.6e-19 99.4 102 57.8
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 2.8e-18 97.1 71 62.0
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 6.2e-18 95.9 80 61.2
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 2.0e-16 90.9 148 33.8
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 3.4e-16 90.1 59 72.9
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 9.2e-14 82.0 41 92.7
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 3.6e-10 70.1 115 35.7
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 1.8e-09 67.8 172 26.7
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 5.2e-09 66.2 46 60.9
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 5.2e-09 66.2 43 69.8
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 7.1e-06 55.8 38 68.4


User provided reference genes

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