Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 6.4e-48 193.7 97 100.0
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 5.2e-42 174.1 94 88.3
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 5.2e-42 174.1 94 88.3
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 9.0e-42 173.3 94 89.4
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 1.2e-41 172.9 94 88.3
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 2.0e-41 172.2 94 88.3
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 4.4e-41 171.0 96 84.4
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 4.4e-41 171.0 94 87.2
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 4.4e-41 171.0 94 86.2
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 4.4e-41 171.0 94 85.1
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 4.4e-41 171.0 94 86.2
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 5.8e-41 170.6 94 85.1
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 5.8e-41 170.6 94 84.0
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 7.6e-41 170.2 94 85.1
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 1.3e-40 169.5 97 82.5
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 1.3e-40 169.5 92 89.1
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 2.2e-40 168.7 95 82.1
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 2.9e-40 168.3 94 86.2
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 3.8e-40 167.9 94 86.2
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 3.8e-40 167.9 94 86.2
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 4.9e-40 167.5 94 85.1
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 4.9e-40 167.5 94 85.1
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 4.9e-40 167.5 95 81.1
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 4.9e-40 167.5 95 81.1
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 4.9e-40 167.5 94 89.4
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 6.4e-40 167.2 92 84.8
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 6.4e-40 167.2 95 84.2
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 8.4e-40 166.8 94 86.2
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 1.1e-39 166.4 94 85.1
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 1.1e-39 166.4 94 81.9
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 1.4e-39 166.0 94 85.1
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 1.4e-39 166.0 97 81.4
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 1.4e-39 166.0 94 84.0
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 1.4e-39 166.0 94 84.0
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 2.4e-39 165.2 94 84.0
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 3.2e-39 164.9 94 84.0
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 3.2e-39 164.9 95 81.1
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 4.2e-39 164.5 95 81.1
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 4.2e-39 164.5 94 84.0
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 7.1e-39 163.7 94 83.0
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 9.3e-39 163.3 94 80.9
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 9.3e-39 163.3 94 81.9
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 9.3e-39 163.3 94 81.9
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 9.3e-39 163.3 94 79.8
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 9.3e-39 163.3 94 84.0
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 9.3e-39 163.3 92 84.8
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 1.6e-38 162.5 94 83.0
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 2.1e-38 162.2 95 80.0
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 2.1e-38 162.2 86 89.5
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 3.5e-38 161.4 98 80.6
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 4.6e-38 161.0 94 80.9
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 6.0e-38 160.6 93 82.8
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 1.3e-37 159.5 95 78.9
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 1.7e-37 159.1 94 81.9
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 1.7e-37 159.1 94 81.9
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.7e-37 159.1 94 81.9
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 1.7e-37 159.1 86 88.4
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 1.7e-37 159.1 86 88.4
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 2.3e-37 158.7 93 80.6
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 3.9e-37 157.9 89 84.3
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 5.1e-37 157.5 94 81.9
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 6.6e-37 157.1 91 81.3
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 6.6e-37 157.1 95 76.8
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 6.6e-37 157.1 94 78.7
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 8.7e-37 156.8 94 78.7
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 8.7e-37 156.8 124 66.1
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 8.7e-37 156.8 89 85.4
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 2.5e-36 155.2 94 78.7
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 3.3e-36 154.8 89 82.0
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 3.3e-36 154.8 95 75.8
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 5.6e-36 154.1 89 79.8
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 7.3e-36 153.7 95 77.9
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 7.3e-36 153.7 99 75.8
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 9.6e-36 153.3 95 75.8
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 9.6e-36 153.3 95 73.7
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 9.6e-36 153.3 95 73.7
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 9.6e-36 153.3 83 86.7
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 9.6e-36 153.3 94 77.7
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.6e-35 152.5 89 80.9
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.6e-35 152.5 89 80.9
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 2.1e-35 152.1 95 72.6
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 4.8e-35 151.0 100 76.0
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 6.2e-35 150.6 81 87.7
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 8.1e-35 150.2 95 72.6
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 1.8e-34 149.1 84 82.1
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 2.4e-34 148.7 92 79.3
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 2.4e-34 148.7 92 79.3
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.4e-34 148.7 122 62.3
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 9.0e-34 146.7 85 78.8
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 2.0e-33 145.6 102 70.6
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 2.0e-33 145.6 94 76.6
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 2.6e-33 145.2 86 77.9
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 4.5e-33 144.4 84 81.0
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 4.5e-33 144.4 84 81.0
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 4.5e-33 144.4 84 81.0
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 9.9e-33 143.3 95 69.5
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 1.7e-32 142.5 84 81.0
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 1.4e-31 139.4 86 70.9
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 1.8e-29 132.5 78 79.5
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 2.3e-29 132.1 74 86.5
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 2.3e-29 132.1 64 92.2
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 8.7e-29 130.2 74 86.5
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 1.5e-28 129.4 77 80.5
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 3.3e-28 128.3 74 87.8
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 1.3e-27 126.3 74 81.1
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 1.3e-27 126.3 74 83.8
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 2.8e-27 125.2 74 82.4
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 4.0e-26 121.3 83 69.9
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 2.0e-25 119.0 73 75.3
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 4.5e-25 117.9 69 82.6
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 5.8e-25 117.5 71 74.6
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 1.3e-24 116.3 72 76.4
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 4.9e-24 114.4 99 60.6
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 1.9e-23 112.5 69 73.9
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.9e-23 112.5 94 61.7
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 1.3e-21 106.3 89 64.0
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 1.3e-21 106.3 89 64.0
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 1.8e-21 105.9 66 74.2
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 4.3e-20 101.3 92 57.6
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 4.3e-20 101.3 83 57.8
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 4.8e-19 97.8 99 50.5
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 4.9e-16 87.8 45 84.4
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 1.9e-15 85.9 53 81.1
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 1.2e-14 83.2 59 67.8
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 2.1e-14 82.4 50 80.0
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 1.8e-13 79.3 85 45.9
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 5.1e-13 77.8 55 65.5
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 1.9e-12 75.9 78 56.4


User provided reference genes

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