Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G018150 Manihot esculenta HOM05D003226 ORTHO05D011023 3.8e-37 157.5 73 100.0
Manes.02G046500 Manihot esculenta HOM05D003226 ORTHO05D005723 2.8e-16 88.2 47 91.5
Manes.07G039648 Manihot esculenta HOM05D003226 ORTHO05D011023 3.2e-15 84.7 43 95.3
Potri.017G083200 Populus trichocarpa HOM05D003226 ORTHO05D005723 4.7e-11 70.9 49 75.5
TAR381G0539 Trochodendron aralioides HOM05D003226 ORTHO05D005723 8.0e-11 70.1 47 74.5
Sabra17G0073700 Salix brachista HOM05D003226 ORTHO05D005723 1.0e-10 69.7 38 86.8
CANSAT64G2675 Cannabis sativa HOM05D003226 ORTHO05D005723 1.8e-10 68.9 41 82.9
Ciclev10010934m.g Citrus clementina HOM05D003226 ORTHO05D005723 3.1e-10 68.2 48 77.1
TPR.G36529 Trifolium pratense HOM05D003226 ORTHO05D005723 3.1e-10 68.2 44 75.0
Cfa007554 Carpinus fangiana HOM05D003226 ORTHO05D005723 4.0e-10 67.8 41 80.5
Prupe.3G267300 Prunus persica HOM05D003226 ORTHO05D005723 4.0e-10 67.8 47 74.5
Oeu035695.1 Olea europaea HOM05D003226 ORTHO05D005723 6.8e-10 67.0 35 88.6
Solyc02g087980.3 Solanum lycopersicum HOM05D003226 ORTHO05D005723 6.8e-10 67.0 45 71.1
Sopen02g032720 Solanum pennellii HOM05D003226 ORTHO05D005723 6.8e-10 67.0 45 71.1
SGA_v2.0_scaffold499G52482 Striga asiatica HOM05D003226 ORTHO05D005723 6.8e-10 67.0 35 88.6
Peaxi162Scf00011g02911 Petunia axillaris HOM05D003226 ORTHO05D005723 8.9e-10 66.6 35 88.6
Hund08915 Selenicereus undatus HOM05D003226 ORTHO05D005723 8.9e-10 66.6 51 66.7
GSVIVG01011408001 Vitis vinifera HOM05D003226 ORTHO05D005723 8.9e-10 66.6 34 91.2
EL10Ac2g02987 Beta vulgaris HOM05D003226 ORTHO05D005723 1.2e-09 66.2 35 88.6
CiPaw.03G026700 Carya illinoinensis HOM05D003226 ORTHO05D005723 1.2e-09 66.2 34 91.2
PGSC0003DMG400001326 Solanum tuberosum HOM05D003226 ORTHO05D005723 1.2e-09 66.2 45 71.1
Migut.H00924 Erythranthe guttata HOM05D003226 ORTHO05D005723 1.5e-09 65.9 35 85.7
TAR375G0513 Trochodendron aralioides HOM05D003226 ORTHO05D005723 1.5e-09 65.9 47 70.2
CAN.G206.153 Capsicum annuum HOM05D003226 ORTHO05D005723 2.0e-09 65.5 45 71.1
Eucgr.I01943 Eucalyptus grandis HOM05D003226 ORTHO05D005723 2.0e-09 65.5 37 83.8
Glyma.13G062800 Glycine max HOM05D003226 ORTHO05D005723 2.0e-09 65.5 41 78.0
Glyma.19G022800 Glycine max HOM05D003226 ORTHO05D005723 2.0e-09 65.5 41 78.0
RcHm_v2.0_Chr6g0300801 Rosa chinensis HOM05D003226 ORTHO05D005723 2.0e-09 65.5 41 75.6
SGA_v2.0_scaffold1G00329 Striga asiatica HOM05D003226 ORTHO05D005723 2.0e-09 65.5 44 77.3
AUR62029891 Chenopodium quinoa HOM05D003226 ORTHO05D005723 2.6e-09 65.1 34 88.2
AUR62034416 Chenopodium quinoa HOM05D003226 ORTHO05D005723 2.6e-09 65.1 34 88.2
Haze_14528 Corylus avellana HOM05D003226 ORTHO05D005723 2.6e-09 65.1 37 83.8
FvH4_2g39941 Fragaria vesca HOM05D003226 ORTHO05D005723 2.6e-09 65.1 38 78.9
FAN15G3277 Fragaria x ananassa HOM05D003226 ORTHO05D005723 2.6e-09 65.1 38 78.9
FAN20G3149 Fragaria x ananassa HOM05D003226 ORTHO05D005723 2.6e-09 65.1 38 78.9
Nitab4.5_0000274g0210 Nicotiana tabacum HOM05D003226 ORTHO05D005723 2.6e-09 65.1 34 88.2
Nitab4.5_0026203g0010 Nicotiana tabacum HOM05D003226 ORTHO05D005723 2.6e-09 65.1 34 88.2
Sc14g0005870 Simmondsia chinensis HOM05D003226 ORTHO05D005723 2.6e-09 65.1 41 78.0
vmacro05694 Vaccinium macrocarpon HOM05D003226 ORTHO05D005723 2.6e-09 65.1 37 81.1
Aqoxy5G00799 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 3.4e-09 64.7 45 71.1
MD02G1198100 Malus domestica HOM05D003226 ORTHO05D005723 3.4e-09 64.7 47 70.2
Peaxi162Scf00129g00132 Petunia axillaris HOM05D003226 ORTHO05D005723 3.4e-09 64.7 33 87.9
Lj7C393G0 Lonicera japonica HOM05D003226 ORTHO05D005723 4.4e-09 64.3 34 85.3
Sed0013037 Sechium edule HOM05D003226 ORTHO05D005723 4.4e-09 64.3 34 85.3
Dinv33760 Davidia involucrata HOM05D003226 ORTHO05D005723 5.8e-09 63.9 34 85.3
Lalb_Chr21g0318701 Lupinus albus HOM05D003226 ORTHO05D005723 5.8e-09 63.9 35 85.7
PSO017G5293 Papaver somniferum HOM05D003226 ORTHO05D005723 5.8e-09 63.9 35 85.7
PSO170G5698 Papaver somniferum HOM05D003226 ORTHO05D005723 5.8e-09 63.9 35 85.7
QL02p063973 Quercus lobata HOM05D003226 ORTHO05D005723 5.8e-09 63.9 35 85.7
Rhsim10G0039000 Rhododendron simsii HOM05D003226 ORTHO05D005723 5.8e-09 63.9 43 72.1
CARHR037400 Cardamine hirsuta HOM05D003226 ORTHO05D005723 7.5e-09 63.5 44 68.2
MELO3C022910.2 Cucumis melo HOM05D003226 ORTHO05D005723 7.5e-09 63.5 35 82.9
FvH4_5g30910 Fragaria vesca HOM05D003226 ORTHO05D005723 7.5e-09 63.5 34 85.3
FAN13G2771 Fragaria x ananassa HOM05D003226 ORTHO05D005723 7.5e-09 63.5 34 85.3
FAN18G4273 Fragaria x ananassa HOM05D003226 ORTHO05D005723 7.5e-09 63.5 34 85.3
Psat4g106040 Pisum sativum HOM05D003226 ORTHO05D005723 7.5e-09 63.5 44 70.5
SalBow1G4412 Salvia bowleyana HOM05D003226 ORTHO05D005723 7.5e-09 63.5 36 77.8
VMungo0464G1600 Vigna mungo HOM05D003226 ORTHO05D005723 7.5e-09 63.5 49 65.3
Actinidia06098 Actinidia chinensis HOM05D003226 ORTHO05D005723 9.8e-09 63.2 36 77.8
Ah.10g031620 Amaranthus hybridus HOM05D003226 ORTHO05D005723 9.8e-09 63.2 50 64.0
Cc07_g03380 Coffea canephora HOM05D003226 ORTHO05D005723 9.8e-09 63.2 43 74.4
Lj4g0003862 Lotus japonicus HOM05D003226 ORTHO05D005723 9.8e-09 63.2 31 93.5
Phvul.004G029000 Phaseolus vulgaris HOM05D003226 ORTHO05D005723 9.8e-09 63.2 34 85.3
PGR004G1048 Punica granatum HOM05D003226 ORTHO05D005723 9.8e-09 63.2 37 78.4
Atru.chr8.162 Acer truncatum HOM05D003226 ORTHO05D005723 1.3e-08 62.8 47 70.2
Cpa.g.sc140.54 Carica papaya HOM05D003226 ORTHO05D005723 1.3e-08 62.8 41 70.7
Ca_22432_v3 Cicer arietinum L. HOM05D003226 ORTHO05D005723 1.3e-08 62.8 44 70.5
COL.COLO4_33309 Corchorus olitorius HOM05D003226 ORTHO05D005723 1.3e-08 62.8 38 78.9
Rhsim07G0120700 Rhododendron simsii HOM05D003226 ORTHO05D005723 1.3e-08 62.8 36 80.6
Carub.0005s0749 Capsella rubella HOM05D003226 ORTHO05D005723 1.7e-08 62.4 44 68.2
CDE04G2390 Ceratophyllum demersum HOM05D003226 ORTHO05D005723 1.7e-08 62.4 34 82.4
Medtr7g091420 Medicago truncatula HOM05D003226 ORTHO05D005723 1.7e-08 62.4 36 83.3
RcHm_v2.0_Chr7g0223741 Rosa chinensis HOM05D003226 ORTHO05D005723 1.7e-08 62.4 34 82.4
SEGI_24334 Sequoiadendron giganteum HOM05D003226 ORTHO05D005723 1.7e-08 62.4 43 69.8
ATR0605G313 Amborella trichopoda HOM05D003226 ORTHO05D005723 2.2e-08 62.0 31 90.3
HanXRQChr15g0473961 Helianthus annuus HOM05D003226 ORTHO05D005723 2.2e-08 62.0 31 90.3
Aa31LG2G4270 Aethionema arabicum HOM05D003226 ORTHO05D005723 2.9e-08 61.6 45 68.9
Medtr8g072890 Medicago truncatula HOM05D003226 ORTHO05D005723 2.9e-08 61.6 31 90.3
SHI25915 Sapria himalayana HOM05D003226 ORTHO05D005723 2.9e-08 61.6 45 62.2
THA.LOC104805468 Tarenaya hassleriana HOM05D003226 ORTHO05D005723 2.9e-08 61.6 38 76.3
Zm00001eb291710 Zea mays HOM05D003226 ORTHO05D005723 2.9e-08 61.6 31 87.1
Aqoxy5G00921 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 3.7e-08 61.2 45 68.9
AL43U10030 Arabidopsis lyrata HOM05D003226 ORTHO05D011023 3.7e-08 61.2 34 82.4
AL8G21600 Arabidopsis lyrata HOM05D003226 ORTHO05D005723 3.7e-08 61.2 34 82.4
AT5G48600 Arabidopsis thaliana HOM05D003226 ORTHO05D005723 3.7e-08 61.2 34 82.4
BcaC06g33656 Brassica carinata HOM05D003226 ORTHO05D005723 3.7e-08 61.2 34 82.4
A06p40240 Brassica napus HOM05D003226 ORTHO05D005723 3.7e-08 61.2 34 82.4
C07p37860 Brassica napus HOM05D003226 ORTHO05D005723 3.7e-08 61.2 34 82.4
BolC7t44308H Brassica oleracea HOM05D003226 ORTHO05D005723 3.7e-08 61.2 34 82.4
BraA06t26939Z Brassica rapa HOM05D003226 ORTHO05D005723 3.7e-08 61.2 34 82.4
CSS0044326 Camellia sinensis var. sinensis HOM05D003226 ORTHO05D005723 3.7e-08 61.2 35 80.0
AUR62039793 Chenopodium quinoa HOM05D003226 ORTHO05D005723 3.7e-08 61.2 31 90.3
ClCG11G000030 Citrullus lanatus HOM05D003226 ORTHO05D005723 3.7e-08 61.2 35 80.0
Thhalv10003529m.g Eutrema salsugineum HOM05D003226 ORTHO05D005723 3.7e-08 61.2 34 82.4
FvH4_6g23280 Fragaria vesca HOM05D003226 ORTHO05D011648 3.7e-08 61.2 30 90.0
Gohir.D09G014800 Gossypium hirsutum HOM05D003226 ORTHO05D005723 3.7e-08 61.2 38 76.3
Gorai.006G016800 Gossypium raimondii HOM05D003226 ORTHO05D005723 3.7e-08 61.2 38 76.3
RcHm_v2.0_Chr5g0008461 Rosa chinensis HOM05D003226 ORTHO05D035631 3.7e-08 61.2 47 68.1
RcHm_v2.0_Chr7g0226461 Rosa chinensis HOM05D003226 ORTHO05D005723 3.7e-08 61.2 34 82.4
Sp2g17560 Schrenkiella parvula HOM05D003226 ORTHO05D005723 3.7e-08 61.2 34 82.4
CsaV3_5G027630 Cucumis sativus L. HOM05D003226 ORTHO05D005723 4.9e-08 60.8 35 80.0
Duzib187G0629 Durio zibethinus HOM05D003226 ORTHO05D005723 4.9e-08 60.8 38 76.3
MBI18_g02834_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D005723 4.9e-08 60.8 37 75.7
Thecc.04G082300 Theobroma cacao HOM05D003226 ORTHO05D005723 4.9e-08 60.8 38 76.3
unitig_899.g15524 Utricularia gibba HOM05D003226 ORTHO05D005723 6.4e-08 60.5 35 74.3
Aqoxy6G02361 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 8.3e-08 60.1 37 81.1
CiPaw.03G026500 Carya illinoinensis HOM05D003226 ORTHO05D020384 1.1e-07 59.7 62 51.6
arahy.Tifrunner.gnm1.ann1.R713I2 Arachis hypogaea HOM05D003226 ORTHO05D005723 1.9e-07 58.9 35 82.9
Lsat_1_v5_gn_3_101601 Lactuca sativa HOM05D003226 ORTHO05D005723 2.4e-07 58.5 44 63.6
TWI34G0415 Tripterygium wilfordii HOM05D003226 ORTHO05D005723 2.4e-07 58.5 38 73.7
vmacro02215 Vaccinium macrocarpon HOM05D003226 ORTHO05D005723 2.4e-07 58.5 45 64.4
ECA246G4217 Erigeron canadensis HOM05D003226 ORTHO05D005723 3.2e-07 58.2 48 62.5
PGR044G0718 Punica granatum HOM05D003226 ORTHO05D011023 3.2e-07 58.2 33 78.8
Dinv02782 Davidia involucrata HOM05D003226 ORTHO05D011023 5.4e-07 57.4 39 74.4
Cre12.g493400 Chlamydomonas reinhardtii HOM05D003226 ORTHO05D005723 9.2e-07 56.6 39 66.7
Solyc02g067300.2 Solanum lycopersicum HOM05D003226 ORTHO05D011023 9.2e-07 56.6 34 76.5
Gohir.D05G353500 Gossypium hirsutum HOM05D001410 ORTHO05D011023 1.2e-06 56.2 34 76.5
Gohir.D06G146050 Gossypium hirsutum HOM05D001410 ORTHO05D011023 1.2e-06 56.2 34 76.5
Gorai.009G386000 Gossypium raimondii HOM05D001410 ORTHO05D011023 1.2e-06 56.2 34 76.5
Mapoly0189s0011 Marchantia polymorpha HOM05D003226 ORTHO05D005723 1.2e-06 56.2 31 83.9
FvH4_4g18080 Fragaria vesca HOM05D003226 ORTHO05D005723 3.5e-06 54.7 34 76.5
FAN27G0753 Fragaria x ananassa HOM05D003226 ORTHO05D011023 6.0e-06 53.9 34 79.4
Gohir.D11G289266 Gossypium hirsutum HOM05D001348 ORTHO05D011023 7.8e-06 53.5 34 73.5


User provided reference genes

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