Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 0.0e+00 1877.4 981 100.0
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 0.0e+00 1107.0 1175 60.0
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 2.4e-251 872.8 1195 49.0
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 1.9e-248 863.2 1210 48.9
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 4.7e-239 832.0 1231 45.9
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 3.5e-234 815.8 1209 46.4
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 5.0e-233 812.0 1217 45.0
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 1.5e-232 810.4 1223 45.9
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 2.0e-229 800.0 1226 45.8
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 4.1e-227 792.3 1213 45.0
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 5.4e-227 792.0 1083 48.3
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 5.2e-222 775.4 1306 44.1
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 5.2e-222 775.4 1187 44.7
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 1.3e-220 770.8 1192 44.9
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 2.4e-219 766.5 1194 45.6
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 1.5e-216 757.3 1210 44.0
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 9.5e-216 754.6 1197 44.4
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 8.1e-215 751.5 1103 46.8
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 1.1e-214 751.1 1089 48.3
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 1.4e-214 750.7 1193 44.4
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 1.4e-214 750.7 1186 44.4
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 1.3e-212 744.2 1202 43.6
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 4.9e-212 742.3 1188 44.9
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 1.1e-211 741.1 1262 42.0
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 1.0e-209 734.6 1255 42.6
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 5.6e-208 728.8 1194 44.2
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 2.1e-207 726.9 1212 43.9
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 2.8e-207 726.5 1234 42.9
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 5.2e-206 722.2 1211 43.6
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 5.8e-205 718.8 1232 42.8
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 5.6e-200 702.2 1169 45.4
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 5.6e-200 702.2 1184 43.2
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 6.2e-199 698.7 1184 43.0
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 2.4e-198 696.8 1164 43.0
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 2.4e-198 696.8 1190 42.8
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 6.8e-198 695.3 1197 42.8
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 2.2e-196 690.3 1191 41.6
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 6.4e-196 688.7 1188 42.8
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 6.4e-196 688.7 1172 42.5
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 7.8e-194 681.8 1192 41.4
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 3.0e-193 679.9 1191 42.5
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 3.9e-193 679.5 1193 41.7
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 1.9e-192 677.2 1197 42.2
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 3.3e-192 676.4 1205 42.6
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 5.6e-192 675.6 1206 42.5
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 2.4e-190 670.2 1172 41.9
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 9.0e-190 668.3 1186 42.8
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 5.8e-189 665.6 1204 42.1
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 5.8e-189 665.6 1028 44.5
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 9.9e-189 664.8 1140 41.8
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 6.4e-188 662.1 1204 41.6
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 1.1e-187 661.4 1129 43.0
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 7.1e-187 658.7 1190 41.4
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 2.7e-186 656.8 1200 41.8
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 1.9e-184 650.6 1217 40.3
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 4.3e-184 649.4 1190 40.7
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 9.6e-184 648.3 1200 40.4
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 2.1e-183 647.1 1169 41.7
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 2.8e-183 646.7 1219 41.3
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 4.8e-183 646.0 994 44.0
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 4.0e-182 642.9 796 50.9
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 2.0e-181 640.6 1188 40.5
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 3.4e-181 639.8 1184 40.5
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 2.2e-180 637.1 1068 43.7
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 8.4e-180 635.2 873 45.4
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 2.4e-179 633.6 1200 39.7
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 3.2e-179 633.3 1185 41.6
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 1.1e-176 624.8 1194 40.1
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 9.6e-176 621.7 1200 39.9
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 1.6e-175 620.9 1197 39.8
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.8e-175 619.4 1072 41.4
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 2.4e-174 617.1 1195 40.0
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 6.9e-174 615.5 1083 40.5
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 4.5e-173 612.8 1166 41.2
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 8.4e-172 608.6 1011 45.0
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 4.2e-171 606.3 878 45.1
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 9.3e-171 605.1 1175 38.0
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 4.6e-170 602.8 1256 40.5
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 4.1e-166 589.7 1285 37.9
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 5.9e-165 585.9 1172 37.6
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 6.5e-164 582.4 1155 38.7
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 9.3e-163 578.6 1182 38.0
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 1.6e-162 577.8 1173 37.1
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 3.5e-162 576.6 1179 37.6
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 1.0e-161 575.1 1169 37.8
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 2.3e-161 573.9 1175 37.3
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 1.9e-160 570.9 838 44.3
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 1.9e-160 570.9 1278 36.9
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 3.3e-160 570.1 1170 38.3
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 1.6e-159 567.8 1174 37.6
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 2.8e-159 567.0 1181 38.5
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 1.1e-158 565.1 1181 38.4
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 1.4e-158 564.7 1174 37.6
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 6.1e-154 549.3 893 41.9
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 1.4e-153 548.1 1179 36.0
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 1.4e-150 538.1 1179 35.8
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 3.1e-150 537.0 903 43.3
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 2.5e-147 527.3 1223 36.6
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 5.5e-147 526.2 1177 35.9
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 5.5e-147 526.2 1177 35.9
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 1.6e-146 524.6 1177 35.9
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.6e-146 524.6 908 41.4
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 7.4e-144 515.8 1183 35.6
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 1.7e-143 514.6 1181 35.6
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 8.2e-143 512.3 866 43.4
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 1.7e-140 504.6 831 41.6
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 8.8e-137 492.3 789 43.0
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 2.2e-135 487.6 994 38.4
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 1.3e-132 478.4 1130 36.2
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 1.7e-132 478.0 1151 37.4
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.4e-129 468.4 784 39.7
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 4.0e-129 466.8 1155 37.7
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 2.8e-127 460.7 1164 34.8
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 2.9e-124 450.7 1149 37.1
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 1.1e-123 448.7 542 50.7
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 2.5e-123 447.6 805 42.4
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 8.8e-121 439.1 1065 35.4
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 6.6e-116 422.9 1176 33.2
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 1.6e-109 401.7 1102 32.0
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 3.0e-100 370.9 1174 32.0
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 1.7e-95 355.1 855 34.6
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 1.1e-94 352.4 842 34.1
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 2.3e-89 334.7 1073 31.8
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 2.2e-79 301.6 440 43.6
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 3.4e-72 277.7 327 50.8
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 2.2e-71 275.0 851 32.3
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 1.8e-65 255.4 474 40.9
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.2e-61 242.7 891 29.2
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 7.9e-61 240.0 787 30.4
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 3.9e-60 237.7 532 35.0
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.4e-57 229.2 877 29.6
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 1.4e-57 229.2 361 43.2
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 1.5e-56 225.7 796 30.8
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 1.1e-49 203.0 714 31.7
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 1.3e-42 179.5 374 37.2
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 4.1e-41 174.5 796 27.9
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 3.6e-37 161.4 756 25.5
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 5.1e-36 157.5 778 26.2
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 1.5e-35 156.0 202 48.0
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 9.7e-35 153.3 263 39.2
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 1.1e-33 149.8 200 48.0
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 1.5e-32 146.0 662 27.9
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 2.0e-32 145.6 937 24.7
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 3.8e-31 141.4 260 38.1
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 4.2e-30 137.9 169 46.7
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 1.6e-29 136.0 246 37.8
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 6.1e-29 134.0 781 26.6
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 2.8e-26 125.2 645 27.1
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 6.3e-26 124.0 168 44.6
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 7.2e-22 110.5 426 27.2
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 2.7e-21 108.6 612 24.3
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 8.8e-20 103.6 670 24.9
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 1.2e-19 103.2 157 38.9
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 1.3e-18 99.8 137 46.7
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 5.3e-17 94.4 634 27.1
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 5.3e-17 94.4 143 44.1
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 3.8e-15 88.2 159 35.8
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 5.0e-15 87.8 425 25.9
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 1.1e-14 86.7 149 36.9
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 4.2e-14 84.7 177 34.5
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 3.6e-13 81.6 285 27.7
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 8.0e-13 80.5 317 25.6
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 3.4e-11 75.1 127 35.4
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 1.8e-09 69.3 89 39.3
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 3.1e-09 68.6 104 49.0
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 3.1e-09 68.6 196 43.4
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 1.0e-07 63.5 484 24.0
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 3.8e-07 61.6 88 37.5
SEGI_04298 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 5.5e-06 57.8 137 29.9


User provided reference genes

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