Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G065200 Manihot esculenta HOM05D005108 ORTHO05D006171 0.0e+00 1444.5 759 100.0
GSVIVG01027314001 Vitis vinifera HOM05D005108 ORTHO05D006171 0.0e+00 1203.3 735 84.8
CiPaw.01G118100 Carya illinoinensis HOM05D005108 ORTHO05D006171 0.0e+00 1196.8 730 84.4
Thecc.10G129800 Theobroma cacao HOM05D005108 ORTHO05D006171 0.0e+00 1195.6 743 83.4
Gohir.D04G017700 Gossypium hirsutum HOM05D005108 ORTHO05D006171 0.0e+00 1187.6 744 82.7
Duzib106G1854 Durio zibethinus HOM05D005108 ORTHO05D006171 0.0e+00 1186.0 719 85.4
Potri.010G247000 Populus trichocarpa HOM05D005108 ORTHO05D006171 0.0e+00 1178.3 729 84.2
Gohir.A05G398300 Gossypium hirsutum HOM05D005108 ORTHO05D006171 0.0e+00 1177.9 744 81.9
Atru.chr12.1231 Acer truncatum HOM05D005108 ORTHO05D006171 0.0e+00 1176.0 718 84.5
Cfa014950 Carpinus fangiana HOM05D005108 ORTHO05D006171 0.0e+00 1171.8 719 84.6
Eucgr.J00313 Eucalyptus grandis HOM05D005108 ORTHO05D006171 0.0e+00 1171.8 716 84.5
CANSAT56G0991 Cannabis sativa HOM05D005108 ORTHO05D006171 0.0e+00 1168.7 722 82.5
Glyma.09G120200 Glycine max HOM05D005108 ORTHO05D006171 0.0e+00 1168.7 722 83.2
COL.COLO4_28907 Corchorus olitorius HOM05D005108 ORTHO05D006171 0.0e+00 1165.6 752 80.9
CsaV3_6G035790 Cucumis sativus L. HOM05D005108 ORTHO05D006171 0.0e+00 1164.1 719 84.0
Prupe.2G060900 Prunus persica HOM05D005108 ORTHO05D006171 0.0e+00 1163.3 716 83.8
Gorai.012G020500 Gossypium raimondii HOM05D005108 ORTHO05D006171 0.0e+00 1162.9 727 82.7
Dinv24598 Davidia involucrata HOM05D005108 ORTHO05D006171 0.0e+00 1161.7 716 83.5
Sabra10G0192400 Salix brachista HOM05D005108 ORTHO05D006171 0.0e+00 1159.4 719 83.7
MELO3C011386.2 Cucumis melo HOM05D005108 ORTHO05D006171 0.0e+00 1158.7 719 83.7
Sed0020738 Sechium edule HOM05D005108 ORTHO05D006171 0.0e+00 1155.6 719 82.9
TAR633G2703 Trochodendron aralioides HOM05D005108 ORTHO05D006171 0.0e+00 1154.4 716 83.4
TWI15G0284 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 0.0e+00 1153.3 689 86.2
Ca_14181_v3 Cicer arietinum L. HOM05D005108 ORTHO05D006171 0.0e+00 1150.6 722 81.4
CSS0042253 Camellia sinensis var. sinensis HOM05D005108 ORTHO05D006171 0.0e+00 1147.5 745 80.1
Lj2g0000078 Lotus japonicus HOM05D005108 ORTHO05D006171 0.0e+00 1147.5 723 81.6
FvH4_7g05000 Fragaria vesca HOM05D005108 ORTHO05D006171 0.0e+00 1147.1 721 82.1
MD07G1054300 Malus domestica HOM05D005108 ORTHO05D006171 0.0e+00 1146.7 719 82.6
MD02G1265100 Malus domestica HOM05D005108 ORTHO05D006171 0.0e+00 1145.6 719 83.0
Phvul.003G022300 Phaseolus vulgaris HOM05D005108 ORTHO05D006171 0.0e+00 1142.5 722 81.3
Lalb_Chr10g0096011 Lupinus albus HOM05D005108 ORTHO05D006171 0.0e+00 1139.8 723 81.5
Actinidia19615 Actinidia chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1138.3 727 81.2
Medtr1g031690 Medicago truncatula HOM05D005108 ORTHO05D006171 0.0e+00 1137.5 722 80.2
CAN.G134.52 Capsicum annuum HOM05D005108 ORTHO05D006171 0.0e+00 1136.7 727 79.9
Solyc01g096900.3 Solanum lycopersicum HOM05D005108 ORTHO05D006171 0.0e+00 1136.7 717 80.6
RcHm_v2.0_Chr1g0331271 Rosa chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1134.4 714 82.1
TPR.G36949 Trifolium pratense HOM05D005108 ORTHO05D006171 0.0e+00 1134.4 719 80.4
Sopen01g040610 Solanum pennellii HOM05D005108 ORTHO05D006171 0.0e+00 1134.0 717 80.3
FAN06G2034 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1132.9 739 80.0
Cc02_g32000 Coffea canephora HOM05D005108 ORTHO05D006171 0.0e+00 1130.9 730 80.5
PGR044G2262 Punica granatum HOM05D005108 ORTHO05D006171 0.0e+00 1128.6 679 85.0
MSTRG.20478 Avicennia marina HOM05D005108 ORTHO05D006171 0.0e+00 1127.5 719 80.3
EL10Ac4g08769 Beta vulgaris HOM05D005108 ORTHO05D006171 0.0e+00 1124.4 719 79.6
Nn2g14646 Nelumbo nucifera HOM05D005108 ORTHO05D006171 0.0e+00 1124.4 714 81.1
Psat6g044120 Pisum sativum HOM05D005108 ORTHO05D006171 0.0e+00 1122.8 719 79.7
AUR62014305 Chenopodium quinoa HOM05D005108 ORTHO05D006171 0.0e+00 1121.3 730 78.5
AUR62034097 Chenopodium quinoa HOM05D005108 ORTHO05D006171 0.0e+00 1120.1 730 78.4
SGA_v2.0_scaffold244G44358 Striga asiatica HOM05D005108 ORTHO05D006171 0.0e+00 1117.1 726 78.5
COL.COLO4_28912 Corchorus olitorius HOM05D005108 ORTHO05D006171 0.0e+00 1116.3 758 77.4
arahy.Tifrunner.gnm1.ann1.3FCU7M Arachis hypogaea HOM05D005108 ORTHO05D006171 0.0e+00 1115.9 762 77.3
Nitab4.5_0005056g0040 Nicotiana tabacum HOM05D005108 ORTHO05D006171 0.0e+00 1115.1 739 78.3
Nitab4.5_0001611g0100 Nicotiana tabacum HOM05D005108 ORTHO05D006171 0.0e+00 1109.7 689 81.7
THA.LOC104826959 Tarenaya hassleriana HOM05D005108 ORTHO05D006171 0.0e+00 1109.4 734 77.7
Carub.0003s0992 Capsella rubella HOM05D005108 ORTHO05D006171 0.0e+00 1107.0 724 77.9
CARHR085270 Cardamine hirsuta HOM05D005108 ORTHO05D006171 0.0e+00 1106.3 728 78.3
Migut.B01161 Erythranthe guttata HOM05D005108 ORTHO05D006171 0.0e+00 1105.1 719 78.3
FAN03G1083 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1104.0 717 80.3
Thhalv10020005m.g Eutrema salsugineum HOM05D005108 ORTHO05D006171 0.0e+00 1101.7 721 77.4
unitig_747.g21367 Utricularia gibba HOM05D005108 ORTHO05D006171 0.0e+00 1098.6 719 78.2
HanXRQChr14g0446691 Helianthus annuus HOM05D005108 ORTHO05D006171 0.0e+00 1096.6 719 77.9
Oeu013050.3 Olea europaea HOM05D005108 ORTHO05D006171 0.0e+00 1095.9 765 75.0
AT3G10690 Arabidopsis thaliana HOM05D005108 ORTHO05D006171 0.0e+00 1095.5 719 77.7
arahy.Tifrunner.gnm1.ann1.TCCJ6Y Arachis hypogaea HOM05D005108 ORTHO05D006171 0.0e+00 1095.5 726 78.8
DCAR_006625 Daucus carota HOM05D005108 ORTHO05D006171 0.0e+00 1095.1 719 79.0
Sp3g09010 Schrenkiella parvula HOM05D005108 ORTHO05D006171 0.0e+00 1095.1 721 77.8
AL3G22160 Arabidopsis lyrata HOM05D005108 ORTHO05D006171 0.0e+00 1094.7 719 77.5
Aa31LG3G3550 Aethionema arabicum HOM05D005108 ORTHO05D006171 0.0e+00 1091.3 765 74.4
vmacro13787 Vaccinium macrocarpon HOM05D005108 ORTHO05D006171 0.0e+00 1086.6 812 71.2
Lsat_1_v5_gn_2_64500 Lactuca sativa HOM05D005108 ORTHO05D006171 0.0e+00 1085.5 722 76.3
BolC3t16703H Brassica oleracea HOM05D005108 ORTHO05D006171 0.0e+00 1081.6 732 76.4
A03p36700 Brassica napus HOM05D005108 ORTHO05D006171 0.0e+00 1080.9 731 76.3
C03p44330 Brassica napus HOM05D005108 ORTHO05D006171 0.0e+00 1080.5 731 76.2
Aqoxy6G00412 Aquilegia oxysepala HOM05D005108 ORTHO05D006171 0.0e+00 1076.2 723 76.2
FAN10G0981 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1076.2 724 77.9
PSO541G5178 Papaver somniferum HOM05D005108 ORTHO05D006171 5.1e-310 1067.4 716 76.0
PSO675G3383 Papaver somniferum HOM05D005108 ORTHO05D006171 6.7e-310 1067.0 716 76.0
Peaxi162Scf00647g00324 Petunia axillaris HOM05D005108 ORTHO05D006171 6.7e-310 1067.0 746 75.3
BraA03t12833Z Brassica rapa HOM05D005108 ORTHO05D006171 8.7e-310 1066.6 759 73.5
ECA238G1701 Erigeron canadensis HOM05D005108 ORTHO05D006171 1.9e-309 1065.4 720 76.2
SalBow8G0010 Salvia bowleyana HOM05D005108 ORTHO05D006171 4.5e-306 1054.3 742 73.7
ATR0068G093 Amborella trichopoda HOM05D005108 ORTHO05D006171 1.0e-305 1053.1 716 74.9
Lj7A491G32 Lonicera japonica HOM05D005108 ORTHO05D006171 1.4e-302 1042.7 732 75.0
Zm00001eb212160 Zea mays HOM05D005108 ORTHO05D006171 3.1e-299 1031.6 719 73.4
SGA_v2.0_scaffold164G38128 Striga asiatica HOM05D005108 ORTHO05D006171 1.1e-293 1013.1 746 71.4
FAN01G1063 Fragaria x ananassa HOM05D005108 ORTHO05D006171 1.2e-285 986.5 782 69.3
Sc09g0004910 Simmondsia chinensis HOM05D005108 ORTHO05D006171 1.4e-283 979.5 594 82.5
SEGI_06230 Sequoiadendron giganteum HOM05D005108 ORTHO05D006171 1.0e-273 946.8 714 66.5
Hma1.2p1_0892F.1_g233240 Hydrangea macrophylla HOM05D005108 ORTHO05D006171 3.3e-240 835.5 609 73.4
Pp3c8_18800 Physcomitrium patens HOM05D005108 ORTHO05D006171 1.6e-239 833.2 723 58.9
Mapoly0010s0185 Marchantia polymorpha HOM05D005108 ORTHO05D006171 3.8e-236 822.0 720 57.5
QL05p027656 Quercus lobata HOM05D005108 ORTHO05D006171 2.4e-235 819.3 1078 48.1
Glyma.07G166000 Glycine max HOM05D005108 ORTHO05D006171 5.6e-232 808.1 543 78.3
SMO200G0101 Selaginella moellendorffii HOM05D005108 ORTHO05D006171 1.5e-229 800.0 729 55.4
Haze_11639 Corylus avellana HOM05D005108 ORTHO05D006171 1.2e-210 737.3 541 74.7
CBR_g16891 Chara braunii HOM05D005108 ORTHO05D006171 9.7e-200 701.0 738 49.5
SHI21238 Sapria himalayana HOM05D005108 ORTHO05D006171 2.1e-194 683.3 436 78.7
Ciclev10014605m.g Citrus clementina HOM05D005108 ORTHO05D006171 1.8e-193 680.2 437 79.6
ClCG08G010770 Citrullus lanatus HOM05D005108 ORTHO05D006171 9.1e-190 667.9 456 78.9
Rhsim07G0072200 Rhododendron simsii HOM05D005108 ORTHO05D006171 7.2e-187 658.3 431 79.1
MBI19_g19123_MAGBIO Magnolia biondii HOM05D005108 ORTHO05D006171 4.8e-183 645.6 434 77.9
Os03g0812000 Oryza sativa ssp. japonica HOM05D005108 ORTHO05D006171 5.4e-158 562.4 420 69.5
PSO675G3264 Papaver somniferum HOM05D005108 ORTHO05D006171 5.4e-150 535.8 364 74.7
AagrBONN_evm.TU.Sc2ySwM_344.4532 Anthoceros agrestis HOM05D005108 ORTHO05D006171 3.2e-134 483.4 407 57.2
MCO10G205 Micromonas commoda HOM05D005108 ORTHO05D006171 1.6e-130 471.1 734 39.1
PRCOL_00001980 Prasinoderma coloniale HOM05D005108 ORTHO05D006171 2.6e-128 463.8 725 38.3
CDE02G2028 Ceratophyllum demersum HOM05D005108 ORTHO05D006171 3.4e-128 463.4 286 79.7
Ciclev10017460m.g Citrus clementina HOM05D005108 ORTHO05D006171 4.6e-125 453.0 287 82.9
HPP92_019018 Vanilla planifolia HOM05D005108 ORTHO05D006171 5.3e-105 386.3 234 80.8
ClCG08G010760 Citrullus lanatus HOM05D005108 ORTHO05D006171 8.4e-103 379.0 319 67.1
SalBow2G2216 Salvia bowleyana HOM05D005108 ORTHO05D006171 6.2e-90 336.3 308 60.4
Cpa.g.sc54.44 Carica papaya HOM05D005108 ORTHO05D006171 3.1e-89 334.0 325 59.7
RcHm_v2.0_Chr1g0331301 Rosa chinensis HOM05D005108 ORTHO05D006171 1.1e-75 288.9 169 81.7
Cpa.g.sc54.41 Carica papaya HOM05D005108 ORTHO05D006171 7.4e-75 286.2 199 75.4
Cc10_g09260 Coffea canephora HOM05D005108 ORTHO05D006171 7.4e-75 286.2 216 72.2
PSO541G5684 Papaver somniferum HOM05D005108 ORTHO05D006171 2.2e-74 284.6 205 71.2
Cre04.g221650 Chlamydomonas reinhardtii HOM05D005108 ORTHO05D006171 1.4e-70 271.9 589 33.3
RcHm_v2.0_Chr1g0331311 Rosa chinensis HOM05D005108 ORTHO05D006171 1.0e-60 239.2 180 73.9
TWI15G0159 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 6.1e-53 213.4 120 86.7
SHI21237 Sapria himalayana HOM05D005108 ORTHO05D006171 5.4e-49 200.3 146 70.5
Cpa.g.sc54.38 Carica papaya HOM05D005108 ORTHO05D006171 3.0e-44 184.5 96 91.7
Haze_27415 Corylus avellana HOM05D005108 ORTHO05D006171 2.7e-40 171.4 151 54.3
Haze_27335 Corylus avellana HOM05D005108 ORTHO05D006171 1.7e-34 152.1 190 44.7
Haze_11640 Corylus avellana HOM05D005108 ORTHO05D006171 2.2e-34 151.8 80 92.5
Cc00_g10680 Coffea canephora HOM05D005108 ORTHO05D006171 3.4e-27 127.9 76 85.5
TWI15G0962 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 1.5e-22 112.5 87 69.0
HPP92_019017 Vanilla planifolia HOM05D005108 ORTHO05D006171 4.3e-22 110.9 100 61.0
Cc00_g10710 Coffea canephora HOM05D005108 ORTHO05D006171 1.8e-20 105.5 61 82.0
Cc10_g09250 Coffea canephora HOM05D005108 ORTHO05D006171 1.2e-19 102.8 75 69.3
AL1G36750 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 3.7e-18 97.8 55 85.5
Cpa.g.sc54.40 Carica papaya HOM05D005108 ORTHO05D006171 3.7e-18 97.8 72 69.4
arahy.Tifrunner.gnm1.ann1.YBM0H9 Arachis hypogaea HOM05D005108 ORTHO05D006171 6.6e-15 87.0 117 45.3
HanXRQChr01g0008811 Helianthus annuus HOM05D005108 ORTHO05D006171 5.8e-11 73.9 54 63.0
C03p42230 Brassica napus HOM05D005108 ORTHO05D006171 2.1e-08 65.5 85 48.2
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 7.8e-08 63.5 51 66.7
HPP92_018990 Vanilla planifolia HOM05D005108 ORTHO05D006171 1.3e-07 62.8 79 48.1
Ah.15g097280 Amaranthus hybridus HOM05D005108 ORTHO05D006171 1.1e-06 59.7 35 68.6


User provided reference genes

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