Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 0.0e+00 1826.6 971 100.0
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 0.0e+00 1441.4 1039 76.4
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 0.0e+00 1250.3 1022 66.6
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 0.0e+00 1246.1 1045 68.4
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 0.0e+00 1218.8 1023 65.4
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 0.0e+00 1202.2 1025 65.0
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 0.0e+00 1201.8 1029 65.2
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 0.0e+00 1201.0 1084 63.5
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 0.0e+00 1193.7 1063 63.8
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 0.0e+00 1173.3 1089 62.5
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 0.0e+00 1169.1 1079 62.7
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 0.0e+00 1162.9 1075 62.5
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 0.0e+00 1161.4 1025 63.0
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 0.0e+00 1161.0 1025 62.9
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 0.0e+00 1160.6 1074 63.8
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 0.0e+00 1159.4 1025 62.9
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 0.0e+00 1159.4 1123 60.8
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 0.0e+00 1149.0 1023 62.6
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 0.0e+00 1146.3 1099 60.7
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 0.0e+00 1126.7 1032 62.0
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 0.0e+00 1124.8 1059 61.6
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 0.0e+00 1119.8 963 65.8
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 0.0e+00 1119.0 1065 60.4
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 0.0e+00 1119.0 1021 61.6
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 0.0e+00 1115.9 1035 62.1
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 0.0e+00 1110.1 1021 61.7
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 0.0e+00 1102.4 1057 60.3
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 0.0e+00 1100.9 1093 59.2
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 0.0e+00 1092.8 1085 58.1
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 0.0e+00 1080.5 1017 60.6
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 3.3e-311 1071.6 1024 60.6
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 1.1e-309 1066.6 1114 56.1
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 1.5e-309 1066.2 1022 60.1
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.5e-309 1065.4 1037 59.3
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 9.5e-309 1063.5 1037 59.1
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 9.5e-309 1063.5 1025 60.4
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 2.1e-308 1062.4 1033 60.5
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 1.4e-307 1059.7 1029 60.3
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 4.0e-307 1058.1 1033 60.3
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 1.2e-306 1056.6 1022 59.2
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 2.0e-306 1055.8 1023 59.4
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 4.9e-305 1051.2 1056 58.2
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 2.0e-303 1045.8 776 72.9
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.5e-301 1038.9 1025 58.5
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 8.0e-300 1033.9 1046 57.7
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 1.0e-299 1033.5 1028 57.4
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 5.2e-299 1031.2 1060 56.2
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 6.0e-295 1017.7 1024 59.4
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 1.3e-294 1016.5 1028 57.9
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.6e-292 1009.6 1027 57.7
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 3.6e-292 1008.4 1013 57.5
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 9.9e-290 1000.3 918 62.0
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 1.1e-288 996.9 1028 56.9
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 4.6e-287 991.5 1008 57.7
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 3.9e-286 988.4 1070 55.5
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 2.8e-284 982.2 1035 58.1
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 3.8e-281 971.8 1111 52.7
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 6.4e-281 971.1 1020 56.0
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 6.4e-273 944.5 1028 55.7
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 1.9e-269 932.9 1041 55.8
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 2.1e-268 929.5 1024 53.4
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 8.1e-268 927.5 1023 55.0
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 2.4e-267 926.0 1022 55.1
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 9.0e-267 924.1 1020 54.7
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 9.0e-267 924.1 1020 54.7
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 3.4e-266 922.2 1010 56.6
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 1.3e-265 920.2 1016 53.9
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 2.9e-265 919.1 1026 55.8
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 2.9e-265 919.1 1168 49.9
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 9.3e-264 914.1 1051 53.5
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 1.3e-262 910.2 1000 54.6
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 3.0e-262 909.1 1023 53.3
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 1.1e-261 907.1 1016 53.3
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 1.5e-261 906.7 871 61.2
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 3.3e-261 905.6 1024 55.1
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 5.6e-261 904.8 1071 51.7
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 3.1e-259 899.0 1021 52.2
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 2.4e-256 889.4 996 54.9
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 1.5e-253 880.2 1055 51.3
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 9.6e-253 877.5 989 54.4
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 1.1e-248 864.0 1190 46.3
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 2.5e-248 862.8 1041 52.2
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 5.5e-248 861.7 1170 48.5
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 2.4e-243 846.3 1042 51.0
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 2.4e-243 846.3 1042 51.0
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 2.0e-242 843.2 1034 51.6
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 5.5e-240 835.1 1022 52.6
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 6.7e-238 828.2 1032 51.9
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 6.3e-236 821.6 979 52.1
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 1.2e-231 807.4 1030 51.6
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 3.6e-231 805.8 821 57.2
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 6.1e-231 805.1 1030 51.4
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 3.9e-230 802.4 712 62.8
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 2.0e-229 800.0 1046 48.6
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 7.7e-226 788.1 1016 51.3
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 5.0e-225 785.4 1027 49.7
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 8.5e-225 784.6 1026 49.7
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 4.2e-224 782.3 1114 48.0
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 4.2e-224 782.3 1031 49.4
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 9.4e-224 781.2 1026 49.6
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 2.6e-221 773.1 880 55.2
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 8.2e-220 768.1 1024 49.7
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 7.0e-219 765.0 1032 49.4
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 7.0e-219 765.0 1032 49.4
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.2e-215 754.2 594 68.0
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 2.2e-212 743.4 959 49.2
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 8.2e-212 741.5 633 64.5
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 3.5e-210 736.1 844 51.9
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 3.4e-205 719.5 676 59.9
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 1.7e-196 690.6 521 69.3
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 6.1e-191 672.2 816 49.9
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 6.2e-183 645.6 950 44.8
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 8.9e-182 641.7 830 47.1
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 5.4e-179 632.5 825 46.9
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 4.4e-173 612.8 819 46.8
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 2.4e-171 607.1 414 74.4
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 1.2e-154 551.6 824 44.3
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 3.0e-153 547.0 850 40.8
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 6.6e-153 545.8 365 75.9
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 2.9e-148 530.4 365 75.1
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 1.4e-147 528.1 919 40.9
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 7.9e-146 522.3 1030 40.1
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 2.1e-130 471.1 956 37.3
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 2.9e-124 450.7 941 36.6
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 6.3e-119 433.0 353 63.5
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 1.2e-117 428.7 468 55.8
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 1.0e-116 425.6 348 66.1
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 3.8e-100 370.5 409 52.8
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 1.1e-94 352.4 325 58.8
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 3.6e-90 337.4 377 53.6
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 2.3e-89 334.7 453 46.6
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 1.0e-73 282.7 547 39.1
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 4.6e-69 267.3 254 55.9
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.3e-68 265.8 321 52.6
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 8.6e-68 263.1 376 42.8
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.2e-61 242.7 263 52.1
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 1.0e-60 239.6 517 41.2
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 1.0e-60 239.6 517 41.2
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 1.1e-59 236.1 301 44.9
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 6.2e-50 203.8 157 65.6
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.1e-49 203.0 155 70.3
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 8.9e-49 199.9 342 37.1
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 2.4e-46 191.8 113 83.2
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 5.4e-46 190.7 339 41.6
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 6.0e-45 187.2 130 72.3
CAN.G10752.1 Capsicum annuum HOM05D000283 ORTHO05D005391 1.0e-44 186.4 284 47.5
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 3.6e-42 177.9 194 54.1
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 5.3e-41 174.1 144 66.7
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 9.0e-41 173.3 152 56.6
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 2.9e-39 168.3 291 36.8
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 5.1e-36 157.5 169 58.0
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 9.6e-35 153.3 120 65.8
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 6.0e-29 134.0 85 77.6
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 7.9e-29 133.7 75 84.0
PSO339G3701 Papaver somniferum HOM05D000283 ORTHO05D005391 1.8e-28 132.5 468 30.8
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 5.1e-28 131.0 75 82.7
Actinidia29200 Actinidia chinensis HOM05D000283 ORTHO05D019495 8.7e-28 130.2 104 65.4
SEGI_11289 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 2.6e-24 118.6 360 35.6
Nn2g12827 Nelumbo nucifera HOM05D000283 ORTHO05D005391 9.0e-17 93.6 101 51.5
HanXRQChr09g0246591 Helianthus annuus HOM05D000283 ORTHO05D005391 1.5e-16 92.8 83 55.4
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 5.8e-16 90.9 50 84.0
Medtr1g115940 Medicago truncatula HOM05D000283 ORTHO05D019495 2.9e-15 88.6 158 36.7
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 5.0e-15 87.8 50 80.0
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 2.5e-14 85.5 52 75.0
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 6.1e-13 80.9 45 80.0
BraA03t11440Z Brassica rapa HOM05D000283 ORTHO05D019495 1.8e-12 79.3 81 49.4
Glyma.14G115250 Glycine max HOM05D000283 ORTHO05D212723 1.3e-10 73.2 58 69.0
Psat7g108960 Pisum sativum HOM05D000283 ORTHO05D030474 4.8e-10 71.2 49 69.4
BcaB01g03663 Brassica carinata HOM05D033592 ORTHO05D019495 1.1e-09 70.1 104 46.2
A03p22060 Brassica napus HOM05D000283 ORTHO05D019495 1.2e-08 66.6 57 56.1
Lalb_Chr02g0143861 Lupinus albus HOM05D000283 ORTHO05D005391 1.5e-08 66.2 111 40.5
Psat1g094640 Pisum sativum HOM05D000467 ORTHO05D000379 1.1e-06 60.1 52 61.5
PGR004G0605 Punica granatum HOM05D002494 ORTHO05D002673 2.5e-06 58.9 241 25.3
AagrBONN_evm.TU.Sc2ySwM_362.842 Anthoceros agrestis HOM05D002494 ORTHO05D002673 5.5e-06 57.8 262 24.8


User provided reference genes

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