Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 0.0e+00 1594.7 801 100.0
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 0.0e+00 1230.3 805 76.6
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 0.0e+00 1227.2 809 77.1
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 0.0e+00 1224.2 810 76.4
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 0.0e+00 1219.9 809 76.1
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 0.0e+00 1215.3 809 75.6
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1213.7 813 74.8
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1208.7 813 74.8
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 0.0e+00 1208.4 831 74.1
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 0.0e+00 1205.7 803 74.0
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 0.0e+00 1204.1 813 74.7
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 0.0e+00 1199.5 809 75.0
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 0.0e+00 1193.7 808 74.0
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 0.0e+00 1186.4 811 73.7
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 0.0e+00 1177.2 817 71.4
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 0.0e+00 1165.2 814 71.7
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 0.0e+00 1162.1 812 71.3
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 0.0e+00 1147.5 807 72.1
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 0.0e+00 1144.0 811 71.1
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 0.0e+00 1143.3 806 72.0
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 0.0e+00 1138.6 809 70.7
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1137.1 805 71.4
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 0.0e+00 1136.7 808 70.7
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1134.0 807 71.1
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1118.6 805 70.6
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 0.0e+00 1116.3 811 68.7
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 0.0e+00 1106.3 809 68.4
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 0.0e+00 1097.0 870 65.2
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 0.0e+00 1092.0 810 68.8
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 0.0e+00 1088.9 811 66.6
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 2.2e-311 1072.0 812 65.9
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 1.1e-310 1069.7 787 68.1
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 9.2e-310 1066.6 815 67.4
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 7.8e-309 1063.5 781 68.4
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.1e-308 1060.8 808 67.6
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 4.3e-307 1057.7 796 67.1
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 3.6e-306 1054.7 822 65.8
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 8.1e-306 1053.5 803 66.3
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 1.4e-305 1052.7 821 65.3
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.8e-305 1052.4 729 72.2
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 3.1e-305 1051.6 799 66.6
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 2.0e-304 1048.9 812 64.9
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 2.6e-304 1048.5 813 65.8
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 7.6e-304 1047.0 802 65.8
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 9.9e-304 1046.6 796 66.6
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 1.3e-303 1046.2 797 66.5
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 4.9e-303 1044.3 797 66.5
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 6.4e-303 1043.9 811 65.4
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 4.6e-301 1037.7 819 64.6
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 1.7e-300 1035.8 819 64.5
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 3.9e-300 1034.6 784 66.3
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 1.9e-299 1032.3 805 65.0
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 2.5e-299 1031.9 825 63.3
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 3.3e-299 1031.6 792 66.5
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 7.3e-299 1030.4 825 63.3
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 1.6e-298 1029.2 786 65.5
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 3.6e-298 1028.1 807 64.4
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 6.2e-298 1027.3 830 64.0
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 6.2e-298 1027.3 816 63.6
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 4.0e-297 1024.6 790 65.3
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 5.3e-297 1024.2 829 63.3
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 1.5e-296 1022.7 809 62.8
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 2.0e-296 1022.3 809 63.8
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 2.9e-295 1018.5 751 67.2
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 6.4e-295 1017.3 811 63.4
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 5.4e-294 1014.2 821 62.7
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 7.1e-294 1013.8 797 66.4
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 1.6e-293 1012.7 811 62.6
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 2.1e-293 1012.3 809 63.0
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 3.5e-293 1011.5 806 64.0
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 7.9e-293 1010.4 811 63.3
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 3.0e-292 1008.4 813 63.2
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 6.6e-292 1007.3 734 69.3
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 1.9e-291 1005.7 814 62.2
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 9.6e-291 1003.4 809 61.3
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 8.1e-290 1000.3 837 61.5
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 2.4e-289 998.8 810 62.2
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 3.4e-288 995.0 814 62.9
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 1.9e-283 979.2 817 63.0
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 1.1e-281 973.4 818 61.1
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 8.7e-276 953.7 808 59.9
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 1.6e-274 949.5 805 60.6
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 1.9e-267 926.0 703 65.7
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 7.4e-267 924.1 613 75.2
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 4.1e-265 918.3 850 58.6
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 2.1e-261 906.0 873 54.6
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 8.2e-258 894.0 824 57.5
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.2e-256 890.2 619 73.0
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.2e-256 890.2 619 73.0
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 9.1e-249 864.0 620 71.1
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 1.3e-247 860.1 780 58.2
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 4.4e-243 845.1 591 71.1
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 6.3e-234 814.7 618 67.5
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 2.6e-227 792.7 622 65.4
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 6.0e-208 728.4 717 53.0
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 1.6e-200 703.7 789 49.8
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 4.3e-198 695.7 766 48.6
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 3.2e-193 679.5 818 45.8
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 1.3e-186 657.5 719 48.0
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 7.1e-185 651.7 546 62.6
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 8.4e-170 601.7 402 73.9
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 6.9e-164 582.0 472 60.8
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 7.4e-158 562.0 481 62.0
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 7.6e-155 552.0 548 52.2
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 2.9e-154 550.1 395 72.2
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 1.6e-144 517.7 331 74.3
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 6.3e-133 479.2 341 67.7
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.6e-131 474.6 339 66.7
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 4.5e-131 473.0 797 37.3
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.7e-128 463.8 394 61.9
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 3.4e-118 430.3 781 36.7
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 1.5e-113 414.8 779 35.8
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 5.4e-108 396.4 479 49.5
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.4e-100 371.7 473 44.2
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 1.4e-95 355.1 277 65.7
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 8.9e-87 325.9 244 65.2
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.2e-85 321.2 301 56.5
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 2.8e-80 304.3 377 49.3
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.8e-77 293.9 183 73.8
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 4.9e-77 293.5 858 29.4
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.2e-67 262.3 323 44.3
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 4.6e-67 260.4 307 46.6
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.6e-64 250.8 189 63.0
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 6.9e-63 246.5 232 63.8
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 5.1e-58 230.3 176 67.0
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.5e-57 228.0 144 72.9
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 2.8e-56 224.6 228 48.2
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 5.5e-52 210.3 158 65.2
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.5e-46 192.2 168 61.9
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.5e-44 184.9 168 59.5
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.5e-41 175.6 148 60.1
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 2.2e-40 171.8 210 45.7
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.2e-37 161.8 231 39.0
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 4.7e-27 127.5 143 50.3
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 3.9e-26 124.4 104 56.7
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 3.3e-17 94.7 759 22.1
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 1.2e-11 76.3 92 44.6
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 1.6e-11 75.9 419 21.7
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 8.8e-10 70.1 43 72.1
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 1.7e-08 65.9 67 49.3
MD07G1221000 Malus domestica HOM05D005539 ORTHO05D006644 7.7e-06 57.0 36 69.4


User provided reference genes

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