Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 0.0e+00 2216.8 1117 100.0
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 0.0e+00 1353.6 1196 61.6
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 0.0e+00 1343.6 1210 61.0
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 0.0e+00 1320.1 1128 63.8
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 0.0e+00 1296.6 1130 61.9
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 0.0e+00 1294.6 1132 61.0
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 0.0e+00 1289.2 1173 60.1
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 0.0e+00 1262.3 1128 59.8
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 0.0e+00 1240.7 1131 60.5
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 0.0e+00 1240.3 1138 59.3
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 0.0e+00 1236.1 1163 59.2
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 0.0e+00 1233.4 1112 60.3
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 0.0e+00 1211.8 1168 57.4
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 0.0e+00 1204.1 1151 58.1
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 0.0e+00 1188.3 1126 57.6
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 0.0e+00 1171.4 1132 58.4
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 0.0e+00 1141.7 1133 55.4
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 0.0e+00 1112.8 1144 55.2
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 0.0e+00 1108.2 1134 55.2
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 0.0e+00 1107.8 1129 55.4
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 0.0e+00 1104.4 1060 57.9
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 0.0e+00 1104.0 1003 59.7
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 0.0e+00 1099.7 1003 59.6
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 0.0e+00 1090.9 1149 53.4
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 0.0e+00 1086.6 1155 53.8
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 0.0e+00 1079.7 1222 52.0
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 7.6e-312 1074.7 1145 53.5
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 5.6e-305 1051.2 1252 49.8
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 2.0e-302 1042.7 1135 52.3
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 3.4e-302 1042.0 1252 48.8
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 1.9e-300 1036.2 1111 52.7
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 4.2e-300 1035.0 1199 50.2
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 9.2e-300 1033.9 1058 54.9
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.6e-299 1033.1 1228 49.8
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 1.0e-298 1030.4 1263 48.1
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 7.3e-297 1024.2 1136 51.2
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 1.1e-295 1020.4 1185 49.9
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 7.6e-294 1014.2 1179 49.1
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 2.2e-293 1012.7 1158 50.6
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 1.4e-292 1010.0 1167 50.0
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 1.2e-291 1006.9 1175 49.4
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.7e-291 1005.7 1299 46.7
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 1.0e-290 1003.8 1129 50.6
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 5.1e-290 1001.5 1139 50.2
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.1e-289 1000.3 1174 49.7
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 2.5e-289 999.2 1178 48.5
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 2.5e-289 999.2 1146 50.2
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 5.6e-289 998.0 1173 49.7
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 2.6e-286 989.2 1158 49.6
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 7.6e-286 987.6 1136 49.6
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 1.7e-285 986.5 1142 49.8
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 6.4e-285 984.6 1145 49.3
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 8.4e-285 984.2 1183 48.4
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 1.2e-283 980.3 1171 49.3
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 3.0e-282 975.7 1180 48.6
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 9.6e-281 970.7 1160 48.4
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 2.1e-280 969.5 1171 48.1
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.2e-278 963.8 1198 48.0
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 1.2e-278 963.8 1110 49.3
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 3.4e-278 962.2 1091 51.3
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 2.5e-276 956.1 1256 46.1
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 2.1e-275 953.0 1055 50.6
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 3.5e-275 952.2 1124 50.1
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 7.9e-275 951.0 1095 51.1
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 4.3e-273 945.3 1217 46.7
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 2.1e-272 943.0 1159 47.7
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 7.6e-270 934.5 1076 49.3
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 1.3e-269 933.7 1130 49.0
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 2.2e-269 932.9 1240 45.1
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 3.2e-268 929.1 1088 49.1
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 2.1e-267 926.4 1133 47.4
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 7.9e-267 924.5 1307 44.0
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 8.7e-266 921.0 647 71.4
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 1.6e-264 916.8 1172 46.3
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 2.2e-264 916.4 1179 46.4
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 6.3e-264 914.8 1230 46.0
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 9.0e-263 911.0 1256 45.1
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 1.1e-260 904.0 1130 47.5
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 1.8e-258 896.7 1065 49.1
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 2.3e-258 896.3 1238 44.7
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 1.5e-257 893.6 1146 45.7
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 2.2e-256 889.8 1129 46.1
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 3.1e-255 885.9 1129 46.0
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 1.5e-254 883.6 1143 45.9
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 2.7e-251 872.8 1055 49.3
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 3.6e-251 872.5 1142 46.1
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 3.0e-250 869.4 1132 46.1
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 3.0e-250 869.4 999 51.2
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 1.1e-247 860.9 1161 46.3
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 1.1e-247 860.9 1161 46.3
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 5.9e-246 855.1 1153 44.8
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 1.1e-244 850.9 1155 45.0
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 4.8e-232 808.9 1133 44.7
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 7.2e-228 795.0 684 58.6
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 7.5e-225 785.0 1104 44.0
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 1.0e-218 764.6 634 61.7
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 7.8e-214 748.4 743 53.4
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 1.5e-212 744.2 1062 43.9
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 3.3e-212 743.0 1137 42.6
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 5.6e-212 742.3 934 47.8
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 6.4e-208 728.8 992 44.8
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 1.3e-200 704.5 872 47.4
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 1.7e-197 694.1 645 56.1
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 5.2e-194 682.6 1125 40.7
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 8.1e-179 632.1 641 54.9
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 4.9e-176 622.9 822 46.6
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 1.2e-174 618.2 740 48.9
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.2e-174 618.2 1068 38.5
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.6e-163 581.3 511 60.7
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 8.1e-163 578.9 770 46.1
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 1.4e-162 578.2 787 45.2
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.4e-154 550.8 427 65.1
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 4.5e-137 493.4 979 38.3
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 6.5e-136 489.6 978 38.0
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 5.5e-119 433.3 743 40.5
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 2.7e-110 404.4 1140 30.1
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 1.0e-109 402.5 336 61.3
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 2.6e-108 397.9 1054 32.4
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 2.8e-107 394.4 314 64.3
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 1.4e-106 392.1 1126 30.7
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.2e-102 379.0 773 35.6
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 1.1e-98 365.9 302 62.6
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.2e-89 335.9 293 60.1
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 2.3e-88 331.6 267 62.2
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 7.3e-79 300.1 461 44.0
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 4.9e-67 260.8 413 36.8
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 2.1e-62 245.4 334 43.7
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 2.9e-59 235.0 604 34.4
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 5.5e-34 151.0 270 36.7
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 4.6e-33 147.9 550 27.5
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 4.2e-26 124.8 277 31.4
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 1.8e-24 119.4 298 30.2
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 4.8e-22 111.3 275 37.1
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 9.7e-15 87.0 102 52.0
Sabra06G0080700 Salix brachista HOM05D005064 ORTHO05D006611 6.5e-11 74.3 192 34.9
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 9.4e-10 70.5 134 38.1
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 2.7e-09 68.9 142 36.6
SHI12870 Sapria himalayana HOM05D005064 ORTHO05D006611 2.7e-09 68.9 117 35.9


User provided reference genes

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