Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G096550 Manihot esculenta HOM05D001724 ORTHO05D002973 8.9e-29 129.4 58 100.0
Manes.03G141900 Manihot esculenta HOM05D001724 ORTHO05D002973 6.4e-19 96.7 55 76.4
Peaxi162Scf00139g01315 Petunia axillaris HOM05D001724 ORTHO05D002973 2.7e-17 91.3 55 67.3
Lj1C891T5 Lonicera japonica HOM05D001724 ORTHO05D002973 3.5e-17 90.9 55 67.3
Rhsim06G0230400 Rhododendron simsii HOM05D001724 ORTHO05D002973 4.6e-17 90.5 55 67.3
ECA236G0853 Erigeron canadensis HOM05D001724 ORTHO05D002973 6.0e-17 90.1 55 67.3
CAN.G623.15 Capsicum annuum HOM05D001724 ORTHO05D002973 1.3e-16 89.0 55 65.5
vmacro11595 Vaccinium macrocarpon HOM05D001724 ORTHO05D002973 1.3e-16 89.0 56 66.1
BcaC08g43659 Brassica carinata HOM05D001724 ORTHO05D002973 2.3e-16 88.2 55 65.5
C06p10790 Brassica napus HOM05D001724 ORTHO05D002973 2.3e-16 88.2 55 65.5
BolC6t36163H Brassica oleracea HOM05D001724 ORTHO05D002973 2.3e-16 88.2 55 65.5
GSVIVG01014694001 Vitis vinifera HOM05D001724 ORTHO05D002973 2.3e-16 88.2 55 67.3
Dinv10340 Davidia involucrata HOM05D001724 ORTHO05D002973 5.0e-16 87.0 55 67.3
Nitab4.5_0002736g0010 Nicotiana tabacum HOM05D001724 ORTHO05D002973 5.0e-16 87.0 55 63.6
Nitab4.5_0007415g0040 Nicotiana tabacum HOM05D001724 ORTHO05D002973 5.0e-16 87.0 55 65.5
THA.LOC104822731 Tarenaya hassleriana HOM05D001724 ORTHO05D002973 5.0e-16 87.0 55 67.3
SGA_v2.0_scaffold8G04414 Striga asiatica HOM05D001724 ORTHO05D002973 6.6e-16 86.7 55 65.5
TAR629G2285 Trochodendron aralioides HOM05D001724 ORTHO05D002973 8.6e-16 86.3 55 65.5
Aa31LG10G320 Aethionema arabicum HOM05D001724 ORTHO05D002973 1.1e-15 85.9 55 65.5
Lsat_1_v5_gn_7_114340 Lactuca sativa HOM05D001724 ORTHO05D002973 1.1e-15 85.9 55 65.5
Nn3g20983 Nelumbo nucifera HOM05D001724 ORTHO05D002973 1.1e-15 85.9 55 65.5
Oeu049405.1 Olea europaea HOM05D001724 ORTHO05D002973 1.1e-15 85.9 55 65.5
PGR083G1098 Punica granatum HOM05D001724 ORTHO05D002973 1.1e-15 85.9 55 67.3
Thecc.07G012700 Theobroma cacao HOM05D001724 ORTHO05D002973 1.1e-15 85.9 55 65.5
CSS0011372 Camellia sinensis var. sinensis HOM05D001724 ORTHO05D002973 1.5e-15 85.5 55 63.6
Sopen07g033830 Solanum pennellii HOM05D001724 ORTHO05D002973 1.5e-15 85.5 55 63.6
Carub.0001s4445 Capsella rubella HOM05D001724 ORTHO05D002973 1.9e-15 85.1 55 63.6
CARHR045570 Cardamine hirsuta HOM05D001724 ORTHO05D002973 1.9e-15 85.1 55 63.6
ClCG10G004430 Citrullus lanatus HOM05D001724 ORTHO05D002973 1.9e-15 85.1 55 65.5
HanXRQChr11g0334101 Helianthus annuus HOM05D001724 ORTHO05D002973 1.9e-15 85.1 55 65.5
VMungo0540G2248 Vigna mungo HOM05D001724 ORTHO05D002973 1.9e-15 85.1 55 65.5
AUR62017111 Chenopodium quinoa HOM05D001724 ORTHO05D002973 2.5e-15 84.7 55 63.6
Gohir.A01G091900 Gossypium hirsutum HOM05D001724 ORTHO05D002973 2.5e-15 84.7 55 63.6
Gohir.D01G062100 Gossypium hirsutum HOM05D001724 ORTHO05D002973 2.5e-15 84.7 55 63.6
Gorai.002G100700 Gossypium raimondii HOM05D001724 ORTHO05D002973 2.5e-15 84.7 55 63.6
PGSC0003DMG400022169 Solanum tuberosum HOM05D001724 ORTHO05D002973 2.5e-15 84.7 55 61.8
BcaNung06014 Brassica carinata HOM05D001724 ORTHO05D002973 3.3e-15 84.3 55 63.6
Cc05_g14990 Coffea canephora HOM05D001724 ORTHO05D002973 3.3e-15 84.3 55 63.6
COL.COLO4_09841 Corchorus olitorius HOM05D001724 ORTHO05D002973 3.3e-15 84.3 55 63.6
Sed0006389 Sechium edule HOM05D001724 ORTHO05D002973 3.3e-15 84.3 55 65.5
Solyc07g065620.4 Solanum lycopersicum HOM05D001724 ORTHO05D002973 3.3e-15 84.3 55 61.8
Atru.chr2.3696 Acer truncatum HOM05D001724 ORTHO05D002973 4.3e-15 84.0 55 65.5
arahy.Tifrunner.gnm1.ann1.I0JGGQ Arachis hypogaea HOM05D001724 ORTHO05D002973 4.3e-15 84.0 55 63.6
MSTRG.13022 Avicennia marina HOM05D001724 ORTHO05D002973 4.3e-15 84.0 55 65.5
EL10Ac4g07558 Beta vulgaris HOM05D001724 ORTHO05D002973 4.3e-15 84.0 55 65.5
TWI39G0509 Tripterygium wilfordii HOM05D001724 ORTHO05D002973 4.3e-15 84.0 55 65.5
arahy.Tifrunner.gnm1.ann1.IH99E4 Arachis hypogaea HOM05D001724 ORTHO05D002973 5.6e-15 83.6 55 61.8
BraSC56t46398Z Brassica rapa HOM05D001724 ORTHO05D002973 5.6e-15 83.6 55 63.6
QL08p003981 Quercus lobata HOM05D001724 ORTHO05D002973 7.3e-15 83.2 55 65.5
QL08p003988 Quercus lobata HOM05D001724 ORTHO05D002973 7.3e-15 83.2 55 65.5
AT1G55870 Arabidopsis thaliana HOM05D001724 ORTHO05D002973 9.5e-15 82.8 55 61.8
BcaB02g10794 Brassica carinata HOM05D001724 ORTHO05D002973 9.5e-15 82.8 55 63.6
Cfa020185 Carpinus fangiana HOM05D001724 ORTHO05D007284 9.5e-15 82.8 55 63.6
Glyma.08G330300 Glycine max HOM05D001724 ORTHO05D002973 9.5e-15 82.8 55 63.6
TPR.G24133 Trifolium pratense HOM05D001724 ORTHO05D002973 9.5e-15 82.8 55 60.0
Aqoxy1G04266 Aquilegia oxysepala HOM05D001724 ORTHO05D002973 1.2e-14 82.4 55 61.8
CDE10G0672 Ceratophyllum demersum HOM05D001724 ORTHO05D002973 1.2e-14 82.4 55 67.3
CDE10G0704 Ceratophyllum demersum HOM05D001724 ORTHO05D002973 1.2e-14 82.4 55 67.3
Ca_26568_v3 Cicer arietinum L. HOM05D001724 ORTHO05D002973 1.2e-14 82.4 55 61.8
Eucgr.F02044 Eucalyptus grandis HOM05D001724 ORTHO05D002973 1.2e-14 82.4 55 63.6
AL1G64000 Arabidopsis lyrata HOM05D001724 ORTHO05D002973 1.6e-14 82.0 55 61.8
CANSAT11G0804 Cannabis sativa HOM05D001724 ORTHO05D002973 1.6e-14 82.0 55 63.6
Thhalv10011283m.g Eutrema salsugineum HOM05D001724 ORTHO05D002973 1.6e-14 82.0 55 61.8
Phvul.006G058000 Phaseolus vulgaris HOM05D001724 ORTHO05D002973 1.6e-14 82.0 55 63.6
Sp1g41470 Schrenkiella parvula HOM05D001724 ORTHO05D002973 1.6e-14 82.0 55 61.8
Ah.06g181470 Amaranthus hybridus HOM05D001724 ORTHO05D002973 2.1e-14 81.6 56 58.9
Glyma.18G076100 Glycine max HOM05D001724 ORTHO05D002973 2.8e-14 81.3 55 61.8
Actinidia04999 Actinidia chinensis HOM05D001724 ORTHO05D002973 3.6e-14 80.9 55 61.8
Migut.H01753 Erythranthe guttata HOM05D001724 ORTHO05D002973 3.6e-14 80.9 55 63.6
Hund20648 Selenicereus undatus HOM05D001724 ORTHO05D002973 3.6e-14 80.9 55 61.8
AUR62036464 Chenopodium quinoa HOM05D001724 ORTHO05D002973 4.7e-14 80.5 55 61.8
Sabra16G0241500 Salix brachista HOM05D001724 ORTHO05D002973 4.7e-14 80.5 55 63.6
Ciclev10007611m.g Citrus clementina HOM05D001724 ORTHO05D002973 6.2e-14 80.1 55 63.6
Lalb_Chr15g0082171 Lupinus albus HOM05D001724 ORTHO05D002973 6.2e-14 80.1 55 61.8
Potri.001G368401 Populus trichocarpa HOM05D001724 ORTHO05D002973 6.2e-14 80.1 55 63.6
Lj6g0025052 Lotus japonicus HOM05D001724 ORTHO05D002973 8.1e-14 79.7 55 61.8
MELO3C014116.2 Cucumis melo HOM05D001724 ORTHO05D002973 1.1e-13 79.3 55 61.8
CsaV3_3G004220 Cucumis sativus L. HOM05D001724 ORTHO05D002973 1.1e-13 79.3 55 61.8
HPP92_018203 Vanilla planifolia HOM05D001724 ORTHO05D002973 1.1e-13 79.3 56 60.7
DCAR_017078 Daucus carota HOM05D001724 ORTHO05D002973 1.8e-13 78.6 55 60.0
PSO210G1056 Papaver somniferum HOM05D001724 ORTHO05D002973 2.3e-13 78.2 55 58.2
ATR0751G261 Amborella trichopoda HOM05D001724 ORTHO05D002973 3.1e-13 77.8 55 60.0
RcHm_v2.0_Chr5g0077021 Rosa chinensis HOM05D001724 ORTHO05D002973 5.2e-13 77.0 55 58.2
SHI26519 Sapria himalayana HOM05D001724 ORTHO05D000023 5.2e-13 77.0 48 68.8
Hma1.2p1_1094F.1_g256485 Hydrangea macrophylla HOM05D001724 ORTHO05D002973 6.8e-13 76.6 44 70.5
MD11G1030900 Malus domestica HOM05D001724 ORTHO05D002973 6.8e-13 76.6 55 60.0
FvH4_3g42970 Fragaria vesca HOM05D001724 ORTHO05D002973 8.9e-13 76.3 55 58.2
FAN11G2634 Fragaria x ananassa HOM05D001724 ORTHO05D002973 8.9e-13 76.3 55 58.2
FAN21G0081 Fragaria x ananassa HOM05D001724 ORTHO05D002973 8.9e-13 76.3 55 58.2
FAN25G1954 Fragaria x ananassa HOM05D001724 ORTHO05D002973 8.9e-13 76.3 55 58.2
Prupe.6G024200 Prunus persica HOM05D001724 ORTHO05D002973 3.4e-12 74.3 55 58.2
unitig_744.g24042 Utricularia gibba HOM05D001724 ORTHO05D002973 1.7e-11 72.0 55 52.7
MD03G1026900 Malus domestica HOM05D001724 ORTHO05D002973 2.2e-11 71.6 55 56.4
Os04g0467400 Oryza sativa ssp. japonica HOM05D001724 ORTHO05D002973 7.1e-10 66.6 55 49.1
SMO117G0265 Selaginella moellendorffii HOM05D001724 ORTHO05D002973 1.0e-08 62.8 55 45.5
CBR_g84870 Chara braunii HOM05D001724 ORTHO05D002973 2.8e-06 54.7 55 41.8
Manes.14G015536 Manihot esculenta HOM05D001724 ORTHO05D002973 2.8e-06 54.7 30 83.3


User provided reference genes

Program Settings