Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 5.6e-231 803.9 403 100.0
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 4.6e-209 731.1 408 90.0
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 6.7e-208 727.2 408 89.2
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 8.7e-208 726.9 409 89.7
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 1.5e-207 726.1 408 89.5
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 1.5e-207 726.1 406 89.2
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 3.3e-207 724.9 408 89.0
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 5.7e-207 724.2 407 89.7
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 9.6e-207 723.4 410 88.3
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.1e-205 719.9 410 88.3
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 1.4e-205 719.5 412 88.8
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 3.1e-205 718.4 409 88.3
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 2.0e-204 715.7 412 88.3
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 3.4e-204 714.9 409 87.3
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 3.4e-204 714.9 406 87.9
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 7.6e-204 713.8 405 88.4
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 2.2e-203 712.2 411 88.3
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 1.1e-202 709.9 407 88.7
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 1.9e-202 709.1 417 85.9
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 1.9e-202 709.1 405 87.4
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 4.2e-202 708.0 406 87.4
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 5.5e-202 707.6 413 87.7
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 5.5e-202 707.6 409 86.1
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 1.6e-201 706.1 407 87.0
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 1.6e-201 706.1 406 86.9
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 2.1e-201 705.7 408 88.0
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 2.7e-201 705.3 409 87.5
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 4.6e-201 704.5 406 87.2
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 7.9e-201 703.7 403 87.1
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 1.8e-200 702.6 405 86.4
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 6.7e-200 700.7 408 86.8
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 1.1e-199 699.9 406 86.2
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 1.9e-199 699.1 409 86.1
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 1.9e-199 699.1 409 85.6
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 2.5e-199 698.7 407 87.7
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 4.3e-199 698.0 408 85.0
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 5.7e-199 697.6 408 86.0
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 7.4e-199 697.2 422 83.9
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 7.4e-199 697.2 407 88.0
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 7.4e-199 697.2 407 86.2
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 2.2e-198 695.7 403 86.4
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 2.2e-198 695.7 425 84.0
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 4.8e-198 694.5 415 84.6
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 1.4e-197 693.0 412 85.7
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.4e-197 693.0 408 84.1
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 2.4e-197 692.2 410 85.4
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 6.9e-197 690.6 406 85.2
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 2.6e-196 688.7 403 85.4
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 2.6e-196 688.7 409 85.8
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 2.6e-196 688.7 407 85.5
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 3.4e-196 688.3 407 85.5
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 7.7e-196 687.2 405 85.2
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 7.7e-196 687.2 407 85.3
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.3e-195 686.4 407 85.3
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.3e-195 686.4 407 85.3
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 1.3e-195 686.4 406 85.2
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 2.9e-195 685.3 410 84.6
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 2.9e-195 685.3 406 84.2
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 5.0e-195 684.5 411 84.2
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 6.5e-195 684.1 410 84.6
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 8.5e-195 683.7 404 85.4
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 1.4e-194 682.9 410 84.6
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 1.4e-194 682.9 410 84.6
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 1.9e-194 682.6 410 84.6
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 1.9e-194 682.6 410 84.6
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 1.9e-194 682.6 410 84.6
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 2.5e-194 682.2 410 84.4
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 2.5e-194 682.2 373 90.1
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 4.2e-194 681.4 405 85.2
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 4.2e-194 681.4 405 85.2
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 5.5e-194 681.0 405 84.0
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 7.2e-194 680.6 410 84.1
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 7.2e-194 680.6 409 82.4
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 2.1e-193 679.1 410 84.1
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 2.1e-193 679.1 418 82.8
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 2.7e-193 678.7 374 89.3
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 3.6e-193 678.3 416 82.9
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 3.6e-193 678.3 410 83.4
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 4.6e-193 677.9 410 83.9
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 4.6e-193 677.9 404 84.2
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 7.9e-193 677.2 407 84.0
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 1.4e-192 676.4 413 83.8
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 3.9e-192 674.9 410 83.4
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 3.9e-192 674.9 413 83.5
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 8.8e-192 673.7 410 84.1
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 1.1e-191 673.3 413 83.3
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 1.5e-191 672.9 415 82.9
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 1.5e-191 672.9 404 83.9
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 1.5e-191 672.9 406 83.5
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 2.0e-191 672.5 410 83.2
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 5.7e-191 671.0 405 84.0
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 7.4e-191 670.6 408 83.3
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 7.4e-191 670.6 410 84.6
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 1.3e-190 669.8 406 83.0
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 1.3e-190 669.8 405 83.5
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 1.7e-190 669.5 414 83.1
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 1.4e-189 666.4 405 82.5
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 1.8e-189 666.0 426 80.8
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 5.3e-189 664.5 411 81.8
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 5.3e-189 664.5 382 85.9
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 6.9e-189 664.1 424 81.4
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 1.2e-188 663.3 406 83.0
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 1.0e-187 660.2 398 83.7
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 1.3e-187 659.8 386 85.2
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 1.7e-187 659.4 360 89.7
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 1.7e-187 659.4 409 81.9
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 1.2e-177 626.7 333 91.3
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 1.2e-175 620.2 371 84.1
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 3.3e-175 618.6 365 82.5
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 4.1e-173 611.7 406 77.6
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 2.0e-172 609.4 408 78.4
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 2.7e-172 609.0 381 78.0
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 4.5e-172 608.2 365 80.0
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.9e-170 602.8 374 77.5
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 2.7e-164 582.4 338 86.4
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 1.1e-157 560.5 403 73.4
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 9.5e-154 547.4 334 83.5
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 4.0e-152 542.0 317 86.4
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 4.0e-152 542.0 325 84.9
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 7.5e-151 537.7 357 73.1
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 1.7e-147 526.6 377 66.8
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 1.3e-142 510.4 309 83.2
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 3.7e-142 508.8 405 68.9
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 3.5e-140 502.3 292 86.6
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.3e-139 500.4 315 78.4
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 2.8e-137 492.7 299 85.3
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 3.1e-136 489.2 365 68.2
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 5.2e-136 488.4 345 69.3
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 6.2e-129 464.9 369 62.6
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 1.2e-127 460.7 248 90.3
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 5.8e-119 431.8 285 77.2
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 2.3e-115 419.9 278 75.9
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 1.7e-102 377.1 249 72.7
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 1.3e-97 360.9 320 63.1
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 1.0e-59 235.0 132 87.1
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 1.4e-59 234.6 132 86.4
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 3.0e-51 206.8 370 35.9
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.8e-49 200.3 118 80.5
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 3.7e-49 199.9 118 79.7
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 8.0e-44 182.2 104 87.5
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 4.0e-43 179.9 103 87.4
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 4.0e-43 179.9 103 87.4
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 5.0e-38 162.9 94 86.2
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 3.0e-35 153.7 102 79.4
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 2.6e-34 150.6 101 75.2
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.1e-32 145.2 94 77.7
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 4.7e-28 129.8 105 69.5
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 7.5e-26 122.5 148 50.7
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 2.4e-24 117.5 71 74.6
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.9e-21 107.8 81 70.4
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 2.5e-21 107.5 59 84.7
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 4.0e-19 100.1 62 80.6
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 8.9e-19 99.0 47 89.4
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 9.9e-18 95.5 59 79.7
Lalb_Chr22g0358071 Lupinus albus HOM05D004558 ORTHO05D239964 1.5e-13 81.6 77 64.9
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.3e-13 79.3 42 92.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-11 73.9 39 89.7
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 4.6e-07 60.1 53 60.4


User provided reference genes

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