Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 4.0e-111 404.8 211 100.0
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 1.0e-90 337.0 200 86.5
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 4.0e-87 325.1 202 83.2
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 9.9e-86 320.5 204 80.4
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 8.3e-85 317.4 197 82.7
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 2.7e-83 312.4 195 82.1
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 7.8e-83 310.8 195 81.0
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 7.8e-83 310.8 195 81.0
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 1.7e-82 309.7 201 80.1
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 1.7e-82 309.7 200 79.0
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 3.9e-82 308.5 199 79.9
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 3.9e-82 308.5 198 79.8
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 3.9e-82 308.5 204 78.9
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 1.5e-81 306.6 197 80.7
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 1.5e-81 306.6 209 78.0
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 1.5e-81 306.6 198 80.3
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 3.3e-81 305.4 201 79.1
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 4.3e-81 305.1 197 80.2
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 5.6e-81 304.7 195 80.5
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 9.6e-81 303.9 204 76.0
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 1.2e-80 303.5 198 78.8
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 1.2e-80 303.5 198 81.3
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 4.7e-80 301.6 200 78.0
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 8.1e-80 300.8 204 75.5
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 1.4e-79 300.1 201 76.6
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 2.4e-79 299.3 209 74.6
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 2.4e-79 299.3 198 77.3
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 3.1e-79 298.9 195 79.5
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 3.1e-79 298.9 211 74.4
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 3.1e-79 298.9 198 78.8
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 4.0e-79 298.5 197 79.2
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 4.0e-79 298.5 198 77.8
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 5.2e-79 298.1 196 78.6
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 5.2e-79 298.1 199 77.4
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 6.8e-79 297.7 211 75.4
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 1.2e-78 297.0 211 74.4
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 1.5e-78 296.6 199 77.9
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 2.6e-78 295.8 195 77.4
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 3.4e-78 295.4 200 78.0
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 4.4e-78 295.0 197 76.1
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 7.6e-78 294.3 202 75.2
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 7.6e-78 294.3 211 73.9
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 9.9e-78 293.9 200 75.5
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 2.2e-77 292.7 199 75.9
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 2.2e-77 292.7 195 76.9
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 4.9e-77 291.6 200 74.5
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 6.4e-77 291.2 199 75.9
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 6.4e-77 291.2 195 76.4
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 8.4e-77 290.8 198 76.8
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 1.1e-76 290.4 201 76.6
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 1.4e-76 290.0 195 75.9
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 5.4e-76 288.1 196 74.5
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 5.4e-76 288.1 196 74.5
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 5.4e-76 288.1 198 74.7
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 7.1e-76 287.7 200 73.5
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 9.3e-76 287.3 192 76.0
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 9.3e-76 287.3 224 70.5
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.2e-75 287.0 196 74.0
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 2.7e-75 285.8 199 73.4
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 3.5e-75 285.4 195 75.4
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 4.6e-75 285.0 258 62.4
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 4.6e-75 285.0 195 74.9
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 7.8e-75 284.3 259 62.2
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 2.3e-74 282.7 196 75.5
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 8.7e-74 280.8 193 75.6
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 1.5e-73 280.0 195 74.4
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 4.3e-73 278.5 192 74.5
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 4.3e-73 278.5 192 73.4
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 4.3e-73 278.5 181 79.6
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 7.3e-73 277.7 192 74.5
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 7.3e-73 277.7 195 74.9
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 7.3e-73 277.7 181 78.5
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 7.3e-73 277.7 190 75.8
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 1.6e-72 276.6 195 73.3
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 2.8e-72 275.8 193 73.6
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 2.8e-72 275.8 193 73.6
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 4.8e-72 275.0 190 75.8
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 4.8e-72 275.0 213 72.8
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 1.4e-71 273.5 192 73.4
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 1.4e-71 273.5 207 72.5
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 1.8e-71 273.1 191 75.9
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 5.3e-71 271.6 193 73.6
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 6.9e-71 271.2 213 72.3
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 1.5e-70 270.0 194 72.2
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 2.6e-70 269.2 193 72.5
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 2.4e-68 262.7 192 72.9
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 3.9e-66 255.4 167 79.0
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 1.5e-65 253.4 189 67.2
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 2.2e-61 239.6 160 73.1
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 5.4e-60 235.0 192 63.5
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 7.1e-60 234.6 149 78.5
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 1.0e-58 230.7 192 60.9
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 1.8e-58 229.9 197 65.5
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 1.9e-57 226.5 189 63.0
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 2.1e-56 223.0 169 71.6
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 3.7e-56 222.2 196 63.8
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.2e-52 209.1 201 58.7
TWI60G0996 Tripterygium wilfordii HOM05D000780 ORTHO05D008187 5.5e-52 208.4 145 72.4
Dinv06003 Davidia involucrata HOM05D000780 ORTHO05D008187 9.3e-52 207.6 139 76.3
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 3.9e-50 202.2 255 52.9
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 1.8e-47 193.4 109 89.0
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 3.1e-47 192.6 126 81.0
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 1.2e-46 190.7 109 87.2
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 3.4e-46 189.1 119 78.2
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 1.0e-45 187.6 143 71.3
Zm00001eb258800 Zea mays HOM05D000780 ORTHO05D008187 3.3e-41 172.6 142 64.8
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 2.0e-38 163.3 193 48.2
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 6.5e-37 158.3 85 91.8
Dinv18279 Davidia involucrata HOM05D000780 ORTHO05D008187 2.1e-35 153.3 145 59.3
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 6.1e-35 151.8 105 74.3
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 1.4e-34 150.6 203 45.8
ClCG03G011510 Citrullus lanatus HOM05D000780 ORTHO05D008187 2.3e-34 149.8 114 68.4
Haze_04451 Corylus avellana HOM05D000780 ORTHO05D008187 1.3e-29 134.0 141 55.3
AagrBONN_evm.TU.Sc2ySwM_228.3966 Anthoceros agrestis HOM05D000780 ORTHO05D008187 1.4e-28 130.6 150 48.0
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 5.1e-26 122.1 140 55.0
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 1.0e-21 107.8 132 47.0
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 6.5e-21 105.1 62 85.5
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 5.5e-20 102.1 198 34.8
SalBow1G3250 Salvia bowleyana HOM05D000780 ORTHO05D008187 5.3e-15 85.5 92 52.2
SalBow1G5540 Salvia bowleyana HOM05D000780 ORTHO05D008187 7.2e-12 75.1 84 50.0
SalBow1G1556 Salvia bowleyana HOM05D000111 ORTHO05D013786 1.6e-11 73.9 109 45.0
Cpa.g.c42374 Carica papaya HOM05D000780 ORTHO05D008187 1.4e-10 70.9 54 66.7
Psat7g095160 Pisum sativum HOM05D000780 ORTHO05D008187 9.8e-09 64.7 51 64.7


User provided reference genes

Program Settings