Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 0.0e+00 1884.8 1035 100.0
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 0.0e+00 1442.2 1039 76.4
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 0.0e+00 1316.2 1050 66.2
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 0.0e+00 1296.2 1052 65.8
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 0.0e+00 1274.6 1054 66.0
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 0.0e+00 1260.7 1047 68.4
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 0.0e+00 1260.0 1086 66.9
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 0.0e+00 1258.0 1058 65.0
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 0.0e+00 1257.7 1054 65.6
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 0.0e+00 1255.7 1054 65.6
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 0.0e+00 1253.8 1054 65.5
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 0.0e+00 1241.5 1082 66.9
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 0.0e+00 1236.9 1078 66.7
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 0.0e+00 1226.8 1052 64.0
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 0.0e+00 1226.5 1126 64.3
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 0.0e+00 1213.0 1070 66.2
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 0.0e+00 1190.6 1056 64.2
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 0.0e+00 1189.9 1095 60.4
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 0.0e+00 1183.3 1093 63.8
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 0.0e+00 1179.5 1058 63.0
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 0.0e+00 1174.5 1118 59.7
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 0.0e+00 1168.7 1062 62.0
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 0.0e+00 1154.8 1121 59.9
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 0.0e+00 1153.7 1135 58.1
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 0.0e+00 1152.1 1088 59.2
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 0.0e+00 1143.3 1085 60.8
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 0.0e+00 1140.6 1086 58.7
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 0.0e+00 1137.1 1052 61.0
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 0.0e+00 1134.4 1045 60.3
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 0.0e+00 1130.9 1129 57.9
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 0.0e+00 1129.4 993 63.7
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 0.0e+00 1128.2 1052 60.6
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 0.0e+00 1128.2 1074 60.4
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 0.0e+00 1127.1 1077 60.7
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 0.0e+00 1126.7 1074 60.2
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 0.0e+00 1123.2 1064 58.7
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 0.0e+00 1121.7 1143 57.0
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 0.0e+00 1117.4 1056 59.6
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 0.0e+00 1107.8 1070 58.2
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 0.0e+00 1107.4 1055 58.7
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 0.0e+00 1101.7 775 75.1
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 0.0e+00 1087.4 1060 58.0
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 0.0e+00 1086.6 1066 58.3
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 0.0e+00 1080.9 1058 58.2
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 0.0e+00 1080.5 1051 57.6
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 0.0e+00 1079.7 1089 56.3
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 0.0e+00 1075.8 1058 57.9
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.7e-308 1062.8 1074 58.2
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 2.9e-308 1062.0 1043 57.8
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 1.0e-305 1053.5 947 62.2
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 6.8e-305 1050.8 1096 57.1
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 4.1e-302 1041.6 1056 57.1
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 7.0e-302 1040.8 1062 56.8
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 2.1e-298 1029.2 1057 58.8
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 3.0e-297 1025.4 1063 55.5
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 7.5e-296 1020.8 1037 56.4
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 1.1e-294 1016.9 1059 55.9
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 2.4e-294 1015.8 1139 51.7
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 1.2e-288 996.9 1044 56.3
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 1.9e-286 989.6 1050 55.5
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 2.5e-283 979.2 1078 58.0
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 2.8e-282 975.7 1072 54.5
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 6.8e-281 971.1 1044 55.5
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 1.3e-279 966.8 1017 59.0
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 6.4e-279 964.5 1052 58.2
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 1.9e-278 963.0 1059 53.1
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 4.1e-278 961.8 1052 54.8
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 1.3e-276 956.8 1054 52.7
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 1.3e-276 956.8 1054 52.7
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 8.6e-276 954.1 1179 49.8
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 1.4e-273 946.8 1058 52.4
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 1.7e-271 939.9 1030 55.1
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 2.2e-271 939.5 1058 52.7
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 8.4e-271 937.6 1090 51.5
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 8.4e-271 937.6 1052 53.9
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 1.9e-270 936.4 1057 52.2
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 2.1e-269 932.9 912 56.2
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 6.0e-269 931.4 1040 55.3
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 4.3e-267 925.2 1068 52.9
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 2.8e-266 922.5 1036 54.2
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 1.0e-260 904.0 945 55.1
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 1.5e-259 900.2 1071 51.1
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 1.9e-259 899.8 1051 53.3
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 9.6e-259 897.5 1186 48.1
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 7.6e-256 887.9 1076 50.7
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 7.6e-256 887.9 1076 50.7
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 1.3e-250 870.5 1053 51.8
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 9.0e-249 864.4 876 56.5
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 1.5e-248 863.6 714 65.5
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 4.5e-248 862.1 1061 50.4
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 1.3e-247 860.5 1061 50.2
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 2.9e-247 859.4 1009 51.9
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 6.0e-245 851.7 832 58.2
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 9.6e-243 844.3 1060 49.1
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 2.1e-242 843.2 1062 49.5
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 1.4e-241 840.5 1063 49.2
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 1.8e-241 840.1 1062 49.2
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 3.4e-240 835.9 598 73.2
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 1.9e-238 830.1 1050 49.9
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 3.2e-238 829.3 1112 49.3
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 7.1e-238 828.2 1060 50.2
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 1.3e-234 817.4 1004 53.8
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 1.8e-233 813.5 1069 51.6
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 1.8e-233 813.5 1069 51.6
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 2.2e-231 806.6 621 68.6
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 1.9e-230 803.5 910 53.8
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 5.1e-228 795.4 963 49.6
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 9.4e-222 774.6 838 54.3
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 2.6e-219 766.5 685 61.9
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 3.5e-200 703.0 829 50.7
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 1.2e-197 694.5 520 70.2
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 3.6e-197 693.0 840 49.4
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 1.4e-193 681.0 839 49.0
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 2.7e-192 676.8 989 44.0
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 5.0e-183 646.0 826 48.8
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 9.8e-171 605.1 414 74.6
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 1.5e-166 591.3 867 43.7
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 2.8e-165 587.0 851 44.4
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 1.6e-157 561.2 1056 39.8
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 6.2e-157 559.3 945 41.6
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 4.9e-154 549.7 365 75.3
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 2.7e-152 543.9 365 75.6
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 6.6e-143 512.7 970 38.5
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 5.1e-135 486.5 1033 36.5
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 1.3e-125 455.3 532 52.3
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 3.0e-119 434.1 353 62.3
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 3.7e-117 427.2 348 66.7
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 3.6e-112 410.6 971 34.9
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 6.9e-108 396.4 337 64.1
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 9.1e-92 342.8 568 44.2
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 1.2e-91 342.4 471 46.1
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 9.4e-89 332.8 379 53.8
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 2.3e-74 285.0 339 56.9
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 2.8e-69 268.1 253 56.5
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 4.1e-68 264.2 378 42.1
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 2.5e-65 255.0 378 48.1
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 9.5e-65 253.1 297 49.8
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 3.4e-62 244.6 582 35.6
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 3.4e-62 244.6 582 35.6
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 2.3e-58 231.9 297 42.8
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 3.5e-51 208.0 157 65.6
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 8.6e-50 203.4 171 64.9
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 7.3e-49 200.3 341 35.5
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 2.1e-48 198.7 155 68.4
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 4.9e-45 187.6 148 61.5
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 1.4e-44 186.0 136 72.1
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 4.1e-44 184.5 130 70.0
CAN.G10752.1 Capsicum annuum HOM05D000283 ORTHO05D005391 2.8e-40 171.8 286 42.0
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 6.2e-40 170.6 186 53.2
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 8.1e-40 170.2 144 66.0
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 9.9e-38 163.3 288 36.1
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 3.2e-36 158.3 134 62.7
Actinidia29200 Actinidia chinensis HOM05D000283 ORTHO05D019495 8.4e-29 133.7 106 68.9
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 1.9e-28 132.5 75 85.3
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 9.3e-28 130.2 85 76.5
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 1.2e-27 129.8 75 84.0
SEGI_11289 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 2.7e-27 128.6 436 30.3
PSO339G3701 Papaver somniferum HOM05D000283 ORTHO05D005391 2.3e-26 125.6 492 29.1
HanXRQChr09g0246591 Helianthus annuus HOM05D000283 ORTHO05D005391 8.1e-16 90.5 82 52.4
Nn2g12827 Nelumbo nucifera HOM05D000283 ORTHO05D005391 6.9e-15 87.4 77 58.4
BraA03t11440Z Brassica rapa HOM05D000283 ORTHO05D019495 1.5e-14 86.3 71 57.7
Medtr1g115940 Medicago truncatula HOM05D000283 ORTHO05D019495 7.6e-14 84.0 158 34.8
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 1.7e-13 82.8 52 73.1
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 2.9e-13 82.0 45 82.2
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 2.5e-12 79.0 45 77.8
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 2.5e-12 79.0 57 64.9
BcaB01g03663 Brassica carinata HOM05D033592 ORTHO05D019495 3.5e-11 75.1 103 49.5
Psat7g108960 Pisum sativum HOM05D000283 ORTHO05D030474 4.3e-09 68.2 49 67.3
Glyma.14G115250 Glycine max HOM05D000283 ORTHO05D212723 5.7e-09 67.8 99 44.4
TWI38G0573 Tripterygium wilfordii HOM05D002494 ORTHO05D002673 1.8e-07 62.8 269 25.7
A03p22060 Brassica napus HOM05D000283 ORTHO05D019495 4.1e-07 61.6 57 54.4
Sc06g0002980 Simmondsia chinensis HOM05D002494 ORTHO05D002673 9.0e-07 60.5 224 28.6
arahy.Tifrunner.gnm1.ann1.5YBJ8N Arachis hypogaea HOM05D002494 ORTHO05D002673 1.5e-06 59.7 231 27.3
Psat1g094640 Pisum sativum HOM05D000467 ORTHO05D000379 1.5e-06 59.7 52 59.6
arahy.Tifrunner.gnm1.ann1.DAH8ZN Arachis hypogaea HOM05D002494 ORTHO05D002673 3.4e-06 58.5 231 27.3
Thecc.04G272000 Theobroma cacao HOM05D002494 ORTHO05D002673 3.4e-06 58.5 279 25.4
PGR004G0605 Punica granatum HOM05D002494 ORTHO05D002673 5.8e-06 57.8 238 25.2
TWI09G0743 Tripterygium wilfordii HOM05D002494 ORTHO05D002673 7.6e-06 57.4 242 25.2
AUR62035526 Chenopodium quinoa HOM05D002494 ORTHO05D002673 1.0e-05 57.0 233 26.2


User provided reference genes

Program Settings