Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G058173 Manihot esculenta HOM05D003391 ORTHO05D250310 2.1e-58 228.8 115 100.0
Manes.12G128950 Manihot esculenta HOM05D003391 ORTHO05D249565 2.1e-58 228.8 115 100.0
Manes.13G081678 Manihot esculenta HOM05D003391 ORTHO05D250639 5.2e-57 224.2 115 98.3
Manes.08G058900 Manihot esculenta HOM05D003391 ORTHO05D250822 2.1e-42 175.6 90 97.8
Manes.01G037700 Manihot esculenta HOM05D003391 ORTHO05D005563 7.9e-37 157.1 82 98.8
COL.COLO4_06714 Corchorus olitorius HOM05D003391 ORTHO05D005563 7.1e-30 134.0 79 84.8
Gohir.A08G160766 Gossypium hirsutum HOM05D003391 ORTHO05D005563 9.3e-30 133.7 79 84.8
Gohir.D08G181000 Gossypium hirsutum HOM05D003391 ORTHO05D005563 9.3e-30 133.7 79 84.8
Gorai.004G190000 Gossypium raimondii HOM05D003391 ORTHO05D005563 2.1e-29 132.5 79 83.5
Thecc.03G235800 Theobroma cacao HOM05D003391 ORTHO05D005563 1.0e-28 130.2 79 83.5
Duzib068G0467 Durio zibethinus HOM05D003391 ORTHO05D005563 2.3e-28 129.0 78 84.6
Potri.016G023000 Populus trichocarpa HOM05D003391 ORTHO05D005563 6.7e-28 127.5 79 82.3
Ca_11369_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 1.9e-27 125.9 80 83.8
Ca_30786_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 1.9e-27 125.9 80 83.8
Atru.chr13.1465 Acer truncatum HOM05D003391 ORTHO05D005563 2.5e-27 125.6 80 82.5
Duzib084G0647 Durio zibethinus HOM05D003391 ORTHO05D005563 2.5e-27 125.6 79 82.3
Medtr2g028270 Medicago truncatula HOM05D003391 ORTHO05D005563 2.5e-27 125.6 80 83.8
Sed0012933 Sechium edule HOM05D003391 ORTHO05D005563 3.3e-27 125.2 79 81.0
Lalb_Chr18g0057621 Lupinus albus HOM05D003391 ORTHO05D005563 4.3e-27 124.8 80 83.8
Sabra16G0023000 Salix brachista HOM05D003391 ORTHO05D005563 5.7e-27 124.4 79 83.5
Sabra16G0029200 Salix brachista HOM05D003391 ORTHO05D005563 5.7e-27 124.4 79 83.5
arahy.Tifrunner.gnm1.ann1.635YAA Arachis hypogaea HOM05D003391 ORTHO05D005563 7.4e-27 124.0 80 81.2
arahy.Tifrunner.gnm1.ann1.QTWQ8J Arachis hypogaea HOM05D003391 ORTHO05D005563 7.4e-27 124.0 80 81.2
Ca_00789_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 7.4e-27 124.0 79 83.5
Ciclev10029974m.g Citrus clementina HOM05D003391 ORTHO05D005563 9.6e-27 123.6 80 81.2
TPR.G10474 Trifolium pratense HOM05D003391 ORTHO05D005563 1.3e-26 123.2 80 82.5
VMungo0540G0836 Vigna mungo HOM05D003391 ORTHO05D005563 1.3e-26 123.2 80 82.5
CiPaw.10G102000 Carya illinoinensis HOM05D003391 ORTHO05D005563 2.1e-26 122.5 79 82.3
Glyma.15G124200 Glycine max HOM05D003391 ORTHO05D005563 2.1e-26 122.5 80 81.2
RcHm_v2.0_Chr2g0154761 Rosa chinensis HOM05D003391 ORTHO05D005563 2.1e-26 122.5 80 80.0
Glyma.09G018300 Glycine max HOM05D003391 ORTHO05D005563 2.8e-26 122.1 80 81.2
Psat1g171000 Pisum sativum HOM05D003391 ORTHO05D005563 2.8e-26 122.1 80 81.2
MELO3C026391.2 Cucumis melo HOM05D003391 ORTHO05D005563 3.7e-26 121.7 80 81.2
CsaV3_4G032190 Cucumis sativus L. HOM05D003391 ORTHO05D005563 3.7e-26 121.7 80 81.2
Lalb_Chr15g0088521 Lupinus albus HOM05D003391 ORTHO05D005563 3.7e-26 121.7 80 81.2
Phvul.006G134000 Phaseolus vulgaris HOM05D003391 ORTHO05D005563 3.7e-26 121.7 80 81.2
Cfa018226 Carpinus fangiana HOM05D003391 ORTHO05D005563 6.3e-26 120.9 80 81.2
CANSAT64G0651 Cannabis sativa HOM05D003391 ORTHO05D005563 8.2e-26 120.6 78 79.5
Cpa.g.sc122.39 Carica papaya HOM05D003391 ORTHO05D005563 8.2e-26 120.6 81 80.2
Lj6g0008612 Lotus japonicus HOM05D003391 ORTHO05D005563 8.2e-26 120.6 80 80.0
FAN05G0705 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.1e-25 120.2 80 78.8
QL04p065456 Quercus lobata HOM05D003391 ORTHO05D005563 1.1e-25 120.2 79 79.7
FvH4_6g40130 Fragaria vesca HOM05D003391 ORTHO05D005563 1.4e-25 119.8 79 77.2
FAN14G1902 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.4e-25 119.8 79 77.2
MD09G1135000 Malus domestica HOM05D003391 ORTHO05D005563 2.4e-25 119.0 79 81.0
Prupe.3G191700 Prunus persica HOM05D003391 ORTHO05D005563 2.4e-25 119.0 83 78.3
GSVIVG01016094001 Vitis vinifera HOM05D003391 ORTHO05D005563 2.4e-25 119.0 80 78.8
FAN09G1714 Fragaria x ananassa HOM05D003391 ORTHO05D005563 3.1e-25 118.6 80 78.8
Dinv10208 Davidia involucrata HOM05D003391 ORTHO05D005563 6.9e-25 117.5 81 74.1
FAN02G4219 Fragaria x ananassa HOM05D003391 ORTHO05D005563 6.9e-25 117.5 80 77.5
TWI74G0249 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 6.9e-25 117.5 80 78.8
Lj7A654G26 Lonicera japonica HOM05D003391 ORTHO05D005563 9.0e-25 117.1 82 76.8
THA.LOC104809239 Tarenaya hassleriana HOM05D003391 ORTHO05D005563 1.5e-24 116.3 79 77.2
arahy.Tifrunner.gnm1.ann1.MM6MID Arachis hypogaea HOM05D003391 ORTHO05D005563 2.0e-24 115.9 80 77.5
MD17G1124000 Malus domestica HOM05D003391 ORTHO05D005563 3.4e-24 115.2 79 79.7
CSS0023421 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 4.5e-24 114.8 82 76.8
Hma1.2p1_0583F.1_g183000 Hydrangea macrophylla HOM05D003391 ORTHO05D005563 7.6e-24 114.0 82 75.6
PSO541G1880 Papaver somniferum HOM05D003391 ORTHO05D005563 7.6e-24 114.0 82 70.7
PSO675G3205 Papaver somniferum HOM05D003391 ORTHO05D005563 7.6e-24 114.0 82 70.7
TAR626G0891 Trochodendron aralioides HOM05D003391 ORTHO05D005563 7.6e-24 114.0 82 74.4
CSS0020230 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 1.3e-23 113.2 82 75.6
TWI77G0821 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 2.2e-23 112.5 80 75.0
AUR62022296 Chenopodium quinoa HOM05D003391 ORTHO05D005563 6.5e-23 110.9 82 70.7
Rhsim11G0087500 Rhododendron simsii HOM05D003391 ORTHO05D005563 6.5e-23 110.9 81 70.4
vmacro13793 Vaccinium macrocarpon HOM05D003391 ORTHO05D005563 6.5e-23 110.9 81 70.4
Aa31LG10G3790 Aethionema arabicum HOM05D003391 ORTHO05D005563 1.4e-22 109.8 83 69.9
Eucgr.G02677 Eucalyptus grandis HOM05D003391 ORTHO05D005563 1.4e-22 109.8 79 74.7
Eucgr.L01917 Eucalyptus grandis HOM05D003391 ORTHO05D005563 1.4e-22 109.8 79 74.7
MSTRG.9187 Avicennia marina HOM05D003391 ORTHO05D005563 1.9e-22 109.4 82 72.0
AUR62023891 Chenopodium quinoa HOM05D003391 ORTHO05D005563 1.9e-22 109.4 82 70.7
HanXRQChr04g0122221 Helianthus annuus HOM05D003391 ORTHO05D005563 2.5e-22 109.0 85 67.1
SalBow4G0334 Salvia bowleyana HOM05D003391 ORTHO05D005563 2.5e-22 109.0 81 71.6
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 5.5e-22 107.8 81 67.9
EL10Ac9g21140 Beta vulgaris HOM05D003391 ORTHO05D005563 1.6e-21 106.3 82 69.5
Cc06_g14340 Coffea canephora HOM05D003391 ORTHO05D005563 1.6e-21 106.3 90 67.8
ECA236G2623 Erigeron canadensis HOM05D003391 ORTHO05D005563 1.6e-21 106.3 85 65.9
Aqoxy3G00251 Aquilegia oxysepala HOM05D003391 ORTHO05D005563 2.1e-21 105.9 80 70.0
MSTRG.27454 Avicennia marina HOM05D003391 ORTHO05D005563 2.1e-21 105.9 84 71.4
PGR042G2316 Punica granatum HOM05D003391 ORTHO05D005563 2.7e-21 105.5 80 70.0
Lsat_1_v5_gn_7_7561 Lactuca sativa HOM05D003391 ORTHO05D005563 6.1e-21 104.4 91 61.5
Migut.F02007 Erythranthe guttata HOM05D003391 ORTHO05D005563 7.9e-21 104.0 85 70.6
Nn7g37683 Nelumbo nucifera HOM05D003391 ORTHO05D005563 7.9e-21 104.0 82 67.1
Ah.01g004390 Amaranthus hybridus HOM05D003391 ORTHO05D005563 1.8e-20 102.8 82 69.5
BraA05t20918Z Brassica rapa HOM05D003391 ORTHO05D005563 2.3e-20 102.4 106 54.7
BolC5t32086H Brassica oleracea HOM05D003391 ORTHO05D005563 3.0e-20 102.1 100 57.0
Migut.F01784 Erythranthe guttata HOM05D003391 ORTHO05D005563 3.0e-20 102.1 81 67.9
HPP92_006006 Vanilla planifolia HOM05D003391 ORTHO05D005563 3.9e-20 101.7 90 66.7
MBI18_g28220_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 8.7e-20 100.5 85 67.1
BcaB02g11154 Brassica carinata HOM05D003391 ORTHO05D005563 1.5e-19 99.8 83 63.9
A05p20100 Brassica napus HOM05D003391 ORTHO05D005563 1.5e-19 99.8 83 63.9
C05p33590 Brassica napus HOM05D003391 ORTHO05D005563 1.5e-19 99.8 83 63.9
Nitab4.5_0000575g0140 Nicotiana tabacum HOM05D003391 ORTHO05D005563 1.5e-19 99.8 82 67.1
Hund02122 Selenicereus undatus HOM05D003391 ORTHO05D005563 1.9e-19 99.4 81 66.7
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 2.5e-19 99.0 84 67.9
ECA240G2134 Erigeron canadensis HOM05D003391 ORTHO05D005563 2.5e-19 99.0 83 59.0
HanXRQChr03g0093781 Helianthus annuus HOM05D003391 ORTHO05D005563 2.5e-19 99.0 86 61.6
CDE02G0628 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 3.3e-19 98.6 91 64.8
Lsat_1_v5_gn_3_133361 Lactuca sativa HOM05D003391 ORTHO05D005563 3.3e-19 98.6 80 67.5
PGSC0003DMG401012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 4.3e-19 98.2 82 67.1
unitig_899.g14436 Utricularia gibba HOM05D003391 ORTHO05D005563 4.3e-19 98.2 82 65.9
Sp1g37350 Schrenkiella parvula HOM05D003391 ORTHO05D005563 5.7e-19 97.8 83 63.9
BcaC05g27411 Brassica carinata HOM05D003391 ORTHO05D005563 7.4e-19 97.4 83 62.7
Thhalv10011301m.g Eutrema salsugineum HOM05D003391 ORTHO05D005563 7.4e-19 97.4 83 65.1
Peaxi162Scf00072g00087 Petunia axillaris HOM05D003391 ORTHO05D005563 7.4e-19 97.4 82 67.1
DCAR_003077 Daucus carota HOM05D003391 ORTHO05D005563 9.7e-19 97.1 80 66.2
Oeu033843.4 Olea europaea HOM05D003391 ORTHO05D005563 9.7e-19 97.1 78 67.9
BcaB04g17246 Brassica carinata HOM05D003391 ORTHO05D005563 1.3e-18 96.7 87 60.9
BcaC01g01234 Brassica carinata HOM05D003391 ORTHO05D005563 1.3e-18 96.7 87 60.9
CARHR040530 Cardamine hirsuta HOM05D003391 ORTHO05D005563 1.3e-18 96.7 79 64.6
Solyc04g049490.3 Solanum lycopersicum HOM05D003391 ORTHO05D005563 1.3e-18 96.7 82 67.1
SGA_v2.0_scaffold62G21434 Striga asiatica HOM05D003391 ORTHO05D005563 1.3e-18 96.7 96 62.5
C03p89680 Brassica napus HOM05D003391 ORTHO05D005563 1.6e-18 96.3 85 63.5
CAN.G466.12 Capsicum annuum HOM05D003391 ORTHO05D005563 2.2e-18 95.9 82 65.9
Sopen04g019460 Solanum pennellii HOM05D003391 ORTHO05D005563 2.8e-18 95.5 82 65.9
BolC3t21285H Brassica oleracea HOM05D003391 ORTHO05D005563 3.7e-18 95.1 87 59.8
ATR1098G037 Amborella trichopoda HOM05D003391 ORTHO05D005563 6.3e-18 94.4 84 66.7
CAN.G998.14 Capsicum annuum HOM05D003391 ORTHO05D005563 6.3e-18 94.4 82 64.6
AL1G58160 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 8.2e-18 94.0 83 61.4
Sc24g0003350 Simmondsia chinensis HOM05D003391 ORTHO05D005563 1.1e-17 93.6 82 62.2
Atru.chr13.1440 Acer truncatum HOM05D003391 ORTHO05D005563 1.8e-17 92.8 61 80.3
AT1G50500 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 5.3e-17 91.3 83 60.2
Nitab4.5_0007706g0020 Nicotiana tabacum HOM05D003391 ORTHO05D005563 1.3e-15 86.7 82 62.2
Carub.0001s3957 Capsella rubella HOM05D003391 ORTHO05D005563 1.7e-15 86.3 82 57.3
Zm00001eb144220 Zea mays HOM05D003391 ORTHO05D005563 9.4e-14 80.5 82 57.3
Actinidia37789 Actinidia chinensis HOM05D003391 ORTHO05D005563 6.1e-13 77.8 81 56.8
Oeu030440.3 Olea europaea HOM05D003391 ORTHO05D005563 1.1e-11 73.6 52 73.1
SMO196G0220 Selaginella moellendorffii HOM05D003391 ORTHO05D005563 3.3e-11 72.0 89 51.7
AL1G58810 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 1.3e-10 70.1 91 47.3
Pp3c24_4920 Physcomitrium patens HOM05D003391 ORTHO05D005563 2.2e-10 69.3 88 51.1
Pp3c8_8190 Physcomitrium patens HOM05D003391 ORTHO05D005563 2.8e-10 68.9 93 47.3
Mapoly0030s0152 Marchantia polymorpha HOM05D003391 ORTHO05D005563 3.7e-10 68.6 94 47.9
ClCG11G016680 Citrullus lanatus HOM05D003391 ORTHO05D005563 2.9e-07 58.9 40 80.0
AL1G58840 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 9.4e-06 53.9 86 46.5


User provided reference genes

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