Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1199.1 623 100.0
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1120.9 562 97.5
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1117.1 562 96.6
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 0.0e+00 1115.1 562 96.1
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1114.4 562 96.8
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 0.0e+00 1111.7 563 96.6
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 0.0e+00 1110.5 563 96.6
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1110.5 563 96.6
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 0.0e+00 1107.4 563 96.4
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1106.7 563 96.3
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 0.0e+00 1105.1 556 96.2
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 0.0e+00 1104.7 562 95.6
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 0.0e+00 1104.4 563 96.1
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 0.0e+00 1101.3 563 95.6
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 0.0e+00 1099.0 562 94.5
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 0.0e+00 1097.0 562 94.1
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 0.0e+00 1096.6 564 94.1
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 0.0e+00 1095.5 564 94.5
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1095.1 562 94.1
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1094.7 563 95.4
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 0.0e+00 1094.0 562 94.0
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 0.0e+00 1093.6 563 94.5
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 0.0e+00 1092.4 595 91.3
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 0.0e+00 1090.5 563 93.8
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 0.0e+00 1090.5 561 94.1
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 0.0e+00 1090.5 563 94.5
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 0.0e+00 1089.3 564 93.8
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 0.0e+00 1088.6 563 93.8
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 0.0e+00 1088.2 564 93.4
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 0.0e+00 1088.2 563 94.0
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 0.0e+00 1088.2 559 93.9
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 0.0e+00 1087.8 562 92.9
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1087.8 566 93.1
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1087.8 566 93.1
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1087.4 566 93.1
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 0.0e+00 1087.4 562 93.6
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 0.0e+00 1087.4 560 93.9
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 0.0e+00 1086.2 566 92.9
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1085.5 566 92.8
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 0.0e+00 1085.5 559 93.9
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 0.0e+00 1085.1 562 92.7
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 0.0e+00 1084.3 565 92.9
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 0.0e+00 1084.3 562 93.6
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 0.0e+00 1083.9 564 93.1
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 0.0e+00 1083.9 564 92.9
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 0.0e+00 1083.9 565 92.7
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 0.0e+00 1083.6 564 92.9
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 0.0e+00 1083.6 617 87.4
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1083.2 562 93.1
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 0.0e+00 1083.2 562 92.9
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 0.0e+00 1082.8 559 93.6
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 0.0e+00 1082.4 563 93.6
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 0.0e+00 1082.4 562 92.3
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 0.0e+00 1081.2 564 92.6
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 0.0e+00 1081.2 564 92.6
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 0.0e+00 1080.9 559 93.2
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 0.0e+00 1080.9 561 93.4
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 0.0e+00 1080.5 564 92.6
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 0.0e+00 1080.1 561 93.0
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 0.0e+00 1080.1 566 92.8
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 0.0e+00 1078.9 562 92.3
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 0.0e+00 1078.9 561 93.0
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 0.0e+00 1078.5 562 93.4
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 0.0e+00 1078.2 564 92.2
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 0.0e+00 1078.2 564 92.2
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 0.0e+00 1077.8 559 93.4
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 0.0e+00 1077.8 562 92.7
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 0.0e+00 1077.4 561 92.9
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 0.0e+00 1077.4 562 93.2
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 0.0e+00 1077.0 585 90.1
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 0.0e+00 1077.0 561 92.5
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 0.0e+00 1075.1 563 92.4
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 4.3e-312 1073.9 564 92.4
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 4.3e-312 1073.5 561 92.7
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 1.3e-311 1072.4 563 91.8
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 8.5e-311 1069.7 599 88.6
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 7.9e-309 1063.1 561 91.8
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 1.4e-308 1062.4 555 91.2
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 3.0e-308 1061.2 565 91.5
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 3.3e-307 1057.7 551 93.1
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 5.7e-307 1057.0 562 90.6
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 4.8e-306 1053.9 553 92.0
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 8.2e-306 1053.1 562 91.1
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 1.8e-305 1052.0 569 90.0
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 5.9e-304 1047.0 592 87.3
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 2.9e-303 1044.6 570 89.6
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 3.2e-302 1041.2 521 96.5
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 2.3e-300 1035.0 554 89.2
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.1e-297 1026.2 572 88.5
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 3.2e-294 1014.6 562 86.8
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.6e-293 1012.3 561 88.9
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.7e-293 1011.5 553 87.3
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.7e-293 1011.5 553 87.3
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 5.7e-291 1003.8 539 88.7
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 3.5e-288 994.6 521 92.5
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 5.0e-279 964.1 487 94.5
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 1.0e-276 956.4 496 93.5
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 8.0e-269 930.2 564 82.8
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 1.3e-266 922.9 454 97.4
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 4.6e-264 914.4 540 80.6
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 7.8e-248 860.5 543 77.3
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 2.0e-243 845.9 562 76.5
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.6e-237 826.2 564 75.7
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 1.8e-236 822.8 406 97.3
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 6.0e-232 807.7 421 93.1
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 2.3e-231 805.8 528 78.6
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.6e-229 799.7 521 78.7
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 4.0e-228 795.0 521 78.3
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 6.9e-228 794.3 562 73.0
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 1.3e-223 780.0 559 72.5
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.5e-222 775.8 562 73.0
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.1e-221 772.7 502 75.7
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 8.7e-215 750.7 389 93.1
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 5.5e-209 731.5 553 67.6
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 1.5e-195 686.8 507 70.6
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 5.1e-191 671.8 329 97.3
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 2.0e-171 606.7 312 92.0
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 8.9e-159 564.7 511 60.7
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 9.8e-150 534.6 562 55.2
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 6.0e-147 525.4 262 95.8
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.0e-138 498.0 462 58.2
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 3.1e-135 486.5 300 80.7
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 9.9e-134 481.5 258 93.4
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 1.5e-129 467.6 509 53.0
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 7.3e-129 465.3 293 79.9
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 4.7e-128 462.6 565 49.4
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 2.4e-127 460.3 385 64.7
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 3.5e-123 446.4 563 48.5
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.5e-123 446.4 499 50.5
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.4e-119 433.7 237 92.8
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 5.1e-114 416.0 350 63.1
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 7.6e-110 402.1 196 96.4
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 1.2e-99 368.2 246 76.8
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 5.1e-98 362.8 267 70.0
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 6.9e-95 352.4 214 79.4
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 1.7e-93 347.8 305 64.3
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.9e-92 344.4 167 98.2
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.2e-91 341.7 183 86.9
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 4.1e-87 326.6 321 58.9
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 1.3e-85 321.6 154 97.4
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 2.5e-84 317.4 160 93.1
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 2.7e-83 313.9 156 95.5
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 8.5e-77 292.4 176 85.8
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 1.6e-70 271.6 159 84.9
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 4.8e-64 250.0 158 79.7
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 5.9e-54 216.5 123 88.6
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 9.8e-49 199.1 126 78.6
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 2.2e-48 198.0 105 89.5
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 2.1e-43 181.4 113 80.5
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.1e-43 181.4 134 67.9
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 8.0e-43 179.5 275 42.9
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 8.9e-34 149.4 98 79.6
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 1.3e-29 135.6 143 52.4
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 2.5e-28 131.3 75 88.0
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 1.2e-25 122.5 73 84.9
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 2.4e-23 114.8 86 68.6
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 6.0e-22 110.2 55 96.4
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 4.7e-19 100.5 58 84.5
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.2e-17 95.9 52 86.5
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 9.9e-17 92.8 63 73.0
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.7e-16 92.0 47 91.5
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 3.2e-15 87.8 88 61.4
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 7.1e-15 86.7 44 86.4
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 3.5e-14 84.3 59 69.5
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 1.0e-13 82.8 49 79.6
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 5.6e-12 77.0 60 66.7
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 6.2e-11 73.6 53 66.0
MD06G1156600 Malus domestica HOM05D004180 ORTHO05D020683 8.4e-08 63.2 54 61.1


User provided reference genes

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