Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 0.0e+00 1885.5 948 100.0
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 0.0e+00 1320.4 944 70.7
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 0.0e+00 1286.2 941 69.2
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 0.0e+00 1187.9 953 64.0
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 0.0e+00 1186.8 954 63.4
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 0.0e+00 1182.2 949 63.3
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 0.0e+00 1172.9 951 63.1
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 0.0e+00 1171.0 960 63.1
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 0.0e+00 1168.3 956 62.7
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 0.0e+00 1163.3 958 61.4
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 0.0e+00 1157.1 958 61.4
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 0.0e+00 1152.1 970 60.9
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 0.0e+00 1144.4 941 61.4
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 0.0e+00 1137.1 940 62.0
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 0.0e+00 1136.3 947 61.9
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 0.0e+00 1135.9 949 61.1
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 0.0e+00 1130.9 945 62.2
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 0.0e+00 1129.4 963 61.3
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 0.0e+00 1128.2 952 62.5
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 0.0e+00 1127.5 958 60.6
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 0.0e+00 1113.6 958 59.2
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 0.0e+00 1107.4 974 58.6
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 0.0e+00 1105.9 950 59.7
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1096.3 992 57.8
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1095.1 974 58.6
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 6.5e-312 1074.7 947 59.1
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 1.3e-307 1059.7 796 68.7
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 9.9e-303 1043.5 1039 54.2
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 1.4e-301 1039.6 946 55.9
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 3.5e-300 1035.0 952 55.7
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.1e-298 1030.0 951 56.3
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 2.8e-297 1025.4 956 56.6
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 1.1e-296 1023.5 937 57.6
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 1.4e-296 1023.1 967 57.0
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 2.4e-296 1022.3 967 55.8
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 1.1e-293 1013.4 964 56.1
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 1.1e-293 1013.4 952 54.8
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 2.4e-293 1012.3 953 56.3
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 1.2e-292 1010.0 958 55.0
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 3.5e-292 1008.4 957 56.0
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 1.3e-291 1006.5 952 56.1
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 3.0e-291 1005.4 946 56.3
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 3.9e-291 1005.0 953 55.7
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 1.5e-290 1003.0 963 56.0
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 1.9e-290 1002.7 956 56.2
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 8.1e-289 997.3 979 54.3
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 6.5e-286 987.6 939 55.2
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 8.4e-286 987.3 965 54.7
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 1.1e-285 986.9 953 54.6
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 1.9e-285 986.1 954 54.7
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 1.1e-282 976.9 947 55.5
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 1.9e-282 976.1 942 54.6
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 1.3e-281 973.4 962 53.8
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 5.3e-280 968.0 943 53.3
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 7.6e-279 964.1 975 52.8
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 1.7e-278 963.0 990 52.4
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 3.8e-278 961.8 956 54.9
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 1.5e-274 949.9 930 54.3
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 5.7e-274 948.0 956 53.0
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 1.6e-273 946.4 967 53.5
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 1.8e-272 943.0 951 53.0
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 3.1e-272 942.2 944 53.5
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 4.1e-272 941.8 812 60.5
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 6.1e-268 927.9 951 53.2
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 7.4e-266 921.0 938 52.2
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 1.4e-264 916.8 941 52.3
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 6.9e-264 914.4 932 53.1
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 6.7e-259 897.9 941 52.5
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 3.1e-256 889.0 943 51.7
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 2.7e-252 875.9 936 51.4
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 5.7e-250 868.2 878 54.2
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 5.3e-248 861.7 974 49.7
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 7.0e-248 861.3 945 50.5
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 5.9e-247 858.2 865 53.4
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 1.7e-246 856.7 953 50.4
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.9e-245 853.2 990 48.0
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 4.2e-245 852.0 954 48.8
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 4.4e-242 842.0 964 48.9
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 2.8e-241 839.3 959 48.8
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 6.3e-241 838.2 830 53.6
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 2.2e-238 829.7 941 48.0
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 4.2e-237 825.5 970 47.1
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 2.7e-236 822.8 936 48.2
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 5.2e-227 792.0 935 47.6
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 1.3e-225 787.3 808 54.0
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 2.2e-225 786.6 962 47.1
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 4.9e-225 785.4 951 47.2
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 1.1e-224 784.3 948 47.5
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 5.4e-216 755.4 969 45.3
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 9.2e-216 754.6 938 47.4
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 2.0e-215 753.4 723 55.5
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 2.7e-215 753.1 964 46.3
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 7.8e-215 751.5 969 46.4
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 6.6e-214 748.4 965 46.2
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 7.3e-213 745.0 853 50.6
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 9.2e-208 728.0 869 46.0
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 6.0e-207 725.3 865 46.2
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 7.8e-207 724.9 725 52.4
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.3e-206 723.4 588 64.6
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.5e-205 719.9 588 64.3
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 1.1e-203 714.5 1032 42.4
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 5.6e-197 692.2 645 56.1
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.0e-190 671.4 902 44.8
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 4.9e-185 652.5 857 44.3
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 8.4e-185 651.7 675 50.7
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.9e-176 624.0 784 46.0
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 6.2e-172 609.0 813 44.0
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 4.5e-170 602.8 665 50.4
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 1.3e-169 601.3 665 50.4
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 5.5e-168 595.9 659 47.6
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 1.3e-166 591.3 657 47.9
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 7.2e-160 568.9 781 43.5
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.8e-142 508.8 598 47.2
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 2.6e-141 507.3 692 43.4
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 8.2e-140 502.3 694 42.7
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 9.1e-139 498.8 936 36.3
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 4.2e-136 490.0 1008 34.0
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.8e-131 474.6 533 48.0
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 5.3e-131 473.0 484 54.5
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 1.6e-127 461.5 829 37.3
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 3.7e-124 450.3 975 33.1
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 2.4e-123 447.6 815 35.6
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 4.5e-114 416.8 358 59.8
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 1.0e-102 379.0 590 39.7
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 4.1e-99 367.1 602 38.0
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 7.8e-98 362.8 265 66.4
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 3.9e-97 360.5 265 69.4
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 1.4e-94 352.1 574 39.4
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 3.4e-93 347.4 558 40.1
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.0e-81 307.8 420 46.4
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 6.0e-74 283.5 338 45.6
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 1.7e-73 282.0 347 45.8
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.0e-69 268.5 218 60.1
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 2.4e-67 261.5 1173 24.6
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 3.6e-63 247.7 265 47.9
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 1.1e-54 219.5 203 53.7
Dinv16824 Davidia involucrata HOM05D010983 ORTHO05D005224 5.5e-51 207.2 151 66.9
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 2.7e-50 204.9 273 41.4
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 3.4e-45 188.0 230 43.9
BcaC09g51294 Brassica carinata HOM05D004256 ORTHO05D005224 5.9e-45 187.2 141 66.0
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 2.2e-44 185.3 294 37.8
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 1.8e-41 175.6 154 57.8
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 1.0e-33 149.8 431 29.7
Zm00001eb318280 Zea mays HOM05D004256 ORTHO05D005224 1.1e-32 146.4 139 57.6
CAN.G79.20 Capsicum annuum HOM05D004256 ORTHO05D005224 2.0e-29 135.6 125 54.4
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 1.0e-28 133.3 154 47.4
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 6.5e-28 130.6 211 37.4
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 2.5e-27 128.6 97 62.9
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 3.9e-25 121.3 92 65.2
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 2.0e-24 119.0 228 34.6
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 3.7e-23 114.8 140 44.3
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 6.3e-23 114.0 92 64.1
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 3.8e-20 104.8 154 40.3
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 5.2e-17 94.4 154 37.0
Cre03.g191200 Chlamydomonas reinhardtii HOM05D004256 ORTHO05D005224 1.7e-15 89.4 281 25.3
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 1.1e-14 86.7 78 57.7
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 2.4e-14 85.5 105 41.0
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 5.9e-13 80.9 223 29.1
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 7.7e-13 80.5 101 43.6
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 3.8e-12 78.2 127 38.6
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 6.5e-12 77.4 115 40.0
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 1.9e-11 75.9 87 47.1
SEGI_09964 Sequoiadendron giganteum HOM05D000070 ORTHO05D005224 2.5e-11 75.5 67 53.7
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 3.2e-11 75.1 87 47.1
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 3.2e-11 75.1 87 47.1
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 3.2e-11 75.1 119 40.3
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 9.4e-11 73.6 87 46.0
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 1.5e-08 66.2 82 46.3
C01p48000 Brassica napus HOM05D004256 ORTHO05D021760 3.4e-08 65.1 104 40.4
C03p36320 Brassica napus HOM05D004256 ORTHO05D021760 8.3e-07 60.5 81 42.0
BolC3t15944H Brassica oleracea HOM05D004256 ORTHO05D021760 8.3e-07 60.5 81 42.0


User provided reference genes

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