Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 0.0e+00 1520.0 772 100.0
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 2.0e-168 597.0 897 45.5
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 3.7e-74 283.9 891 31.3
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 3.5e-72 277.3 967 29.5
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 1.5e-62 245.4 890 30.3
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 1.3e-58 232.3 908 29.6
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 5.1e-55 220.3 945 28.4
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 4.5e-51 207.2 881 28.3
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 8.7e-47 193.0 566 33.2
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 1.5e-43 182.2 712 29.4
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 1.1e-41 176.0 1054 26.9
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 1.0e-39 169.5 826 25.7
Atru.chr11.323 Acer truncatum HOM05D001849 ORTHO05D004075 4.5e-35 154.1 430 32.1
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.1e-25 122.9 561 28.7
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 1.4e-25 122.5 794 24.7
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 2.5e-17 95.1 141 41.8
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 3.9e-15 87.8 91 49.5
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 8.2e-13 80.1 84 52.4
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 5.3e-12 77.4 71 62.0
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 9.1e-12 76.6 69 58.0
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 1.2e-11 76.3 124 38.7
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 3.4e-11 74.7 71 56.3
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 3.4e-11 74.7 71 56.3
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 4.5e-11 74.3 71 54.9
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 7.7e-11 73.6 72 54.2
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 1.0e-10 73.2 71 56.3
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 1.0e-10 73.2 604 23.5
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 2.2e-10 72.0 70 55.7
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 2.9e-10 71.6 85 50.6
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 2.9e-10 71.6 77 48.1
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 2.9e-10 71.6 77 48.1
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 2.9e-10 71.6 81 49.4
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 2.9e-10 71.6 592 22.6
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 3.8e-10 71.2 69 55.1
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 3.8e-10 71.2 122 40.2
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 5.0e-10 70.9 69 55.1
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 5.0e-10 70.9 69 53.6
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 5.0e-10 70.9 159 33.3
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 5.0e-10 70.9 486 25.3
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 6.5e-10 70.5 69 53.6
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 6.5e-10 70.5 69 53.6
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 6.5e-10 70.5 69 53.6
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 6.5e-10 70.5 69 53.6
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 6.5e-10 70.5 69 56.5
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 6.5e-10 70.5 69 53.6
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 6.5e-10 70.5 60 58.3
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 6.5e-10 70.5 69 52.2
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 6.5e-10 70.5 69 55.1
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 8.5e-10 70.1 69 53.6
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 8.5e-10 70.1 69 53.6
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 8.5e-10 70.1 69 53.6
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 8.5e-10 70.1 69 52.2
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 8.5e-10 70.1 83 47.0
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 1.1e-09 69.7 75 49.3
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 1.1e-09 69.7 75 49.3
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 1.1e-09 69.7 75 49.3
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 1.1e-09 69.7 75 49.3
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 1.1e-09 69.7 75 49.3
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 1.1e-09 69.7 60 58.3
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 1.1e-09 69.7 60 58.3
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 1.1e-09 69.7 81 48.1
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 1.1e-09 69.7 71 53.5
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 1.1e-09 69.7 69 55.1
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 1.1e-09 69.7 69 56.5
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 1.1e-09 69.7 71 53.5
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 1.1e-09 69.7 60 58.3
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 1.4e-09 69.3 69 52.2
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 1.4e-09 69.3 69 52.2
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 1.4e-09 69.3 564 22.9
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 1.4e-09 69.3 82 47.6
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 1.4e-09 69.3 84 47.6
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 1.9e-09 68.9 69 53.6
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 1.9e-09 68.9 68 51.5
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 1.9e-09 68.9 69 55.1
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 1.9e-09 68.9 69 55.1
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 1.9e-09 68.9 69 55.1
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 1.9e-09 68.9 69 55.1
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 1.9e-09 68.9 60 56.7
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 1.9e-09 68.9 69 53.6
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 1.9e-09 68.9 71 53.5
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 2.5e-09 68.6 69 52.2
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 2.5e-09 68.6 71 52.1
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 2.5e-09 68.6 71 52.1
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 2.5e-09 68.6 75 48.0
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 2.5e-09 68.6 69 53.6
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 2.5e-09 68.6 120 36.7
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 2.5e-09 68.6 69 53.6
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 2.5e-09 68.6 69 53.6
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 3.2e-09 68.2 90 43.3
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 3.2e-09 68.2 69 55.1
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 3.2e-09 68.2 60 58.3
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 3.2e-09 68.2 73 54.8
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 3.2e-09 68.2 69 53.6
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 3.2e-09 68.2 69 52.2
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 3.2e-09 68.2 69 52.2
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 4.2e-09 67.8 72 50.0
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 4.2e-09 67.8 69 52.2
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 4.2e-09 67.8 69 53.6
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 4.2e-09 67.8 68 51.5
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 4.2e-09 67.8 68 51.5
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 4.2e-09 67.8 69 53.6
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 4.2e-09 67.8 60 55.0
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 4.2e-09 67.8 69 50.7
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 4.2e-09 67.8 69 47.8
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 5.5e-09 67.4 69 53.6
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 5.5e-09 67.4 71 50.7
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 5.5e-09 67.4 69 53.6
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 5.5e-09 67.4 60 55.0
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 5.5e-09 67.4 60 55.0
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 5.5e-09 67.4 60 55.0
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 5.5e-09 67.4 60 56.7
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 7.2e-09 67.0 69 50.7
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 9.4e-09 66.6 71 47.9
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 9.4e-09 66.6 57 59.6
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 1.2e-08 66.2 71 52.1
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 1.6e-08 65.9 69 53.6
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 1.6e-08 65.9 70 48.6
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 2.1e-08 65.5 68 52.9
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 2.1e-08 65.5 68 51.5
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 2.7e-08 65.1 68 48.5
MD16G1035300 Malus domestica HOM05D001849 ORTHO05D004075 2.7e-08 65.1 278 27.3
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 2.7e-08 65.1 71 47.9
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 3.6e-08 64.7 69 47.8
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 4.7e-08 64.3 59 52.5
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 4.7e-08 64.3 71 49.3
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 4.7e-08 64.3 380 26.1
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 6.1e-08 63.9 69 55.1
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 6.1e-08 63.9 62 51.6
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 7.9e-08 63.5 71 47.9
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 7.9e-08 63.5 69 50.7
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 7.9e-08 63.5 69 50.7
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 1.0e-07 63.2 69 52.2
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 1.0e-07 63.2 382 26.2
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 2.3e-07 62.0 47 63.8
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 2.3e-07 62.0 47 63.8
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 3.0e-07 61.6 99 40.4
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 3.0e-07 61.6 69 50.7
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 3.0e-07 61.6 47 63.8
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 3.0e-07 61.6 47 63.8
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 3.0e-07 61.6 47 63.8
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 3.0e-07 61.6 62 50.0
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 5.2e-07 60.8 47 59.6
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 8.8e-07 60.1 47 59.6
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 8.8e-07 60.1 83 43.4
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 8.8e-07 60.1 47 55.3
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 4.4e-06 57.8 473 23.0
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 4.4e-06 57.8 48 54.2
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 5.7e-06 57.4 89 41.6


User provided reference genes

Program Settings