Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 3.5e-247 857.8 428 100.0
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 1.7e-222 775.8 428 90.7
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 2.4e-219 765.4 428 89.3
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 2.5e-213 745.3 428 86.9
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 1.1e-211 740.0 430 87.2
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 1.2e-210 736.5 428 86.7
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 2.0e-210 735.7 428 85.3
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 4.4e-210 734.6 429 85.3
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 7.6e-210 733.8 430 86.5
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 1.3e-209 733.0 431 85.6
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 3.8e-209 731.5 428 85.5
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 8.4e-209 730.3 428 86.2
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 1.4e-208 729.6 430 85.1
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 1.9e-208 729.2 428 85.7
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 1.9e-208 729.2 429 86.2
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 1.9e-208 729.2 429 86.2
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 3.2e-208 728.4 379 94.2
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 5.4e-208 727.6 429 86.2
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 7.1e-208 727.2 428 86.0
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 1.2e-207 726.5 429 86.2
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 2.1e-207 725.7 428 86.2
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 2.1e-207 725.7 431 86.1
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 2.7e-207 725.3 429 84.8
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 3.5e-207 724.9 428 84.3
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 4.6e-207 724.5 435 84.6
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 4.6e-207 724.5 428 84.8
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 7.8e-207 723.8 431 85.4
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 1.7e-206 722.6 429 84.6
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 2.3e-206 722.2 433 85.0
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 3.0e-206 721.8 430 84.4
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 5.1e-206 721.1 428 85.3
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 6.6e-206 720.7 429 84.6
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 8.7e-206 720.3 428 85.5
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 1.1e-205 719.9 432 82.9
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 1.5e-205 719.5 392 90.3
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 1.5e-205 719.5 432 82.6
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 1.9e-205 719.2 433 83.1
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 1.9e-205 719.2 380 93.4
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 1.9e-205 719.2 428 84.1
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 3.3e-205 718.4 428 84.6
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 3.3e-205 718.4 436 83.5
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 4.3e-205 718.0 429 84.1
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 5.6e-205 717.6 436 83.7
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 7.3e-205 717.2 391 90.0
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 9.6e-205 716.8 428 84.3
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 9.6e-205 716.8 428 84.3
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 1.3e-204 716.5 436 83.9
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 6.2e-204 714.1 428 83.9
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 6.2e-204 714.1 432 82.4
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 6.2e-204 714.1 429 84.1
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 1.1e-203 713.4 432 81.9
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 2.4e-203 712.2 431 83.5
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 4.0e-203 711.4 386 89.9
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 5.3e-203 711.1 427 83.8
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 9.0e-203 710.3 394 88.6
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 1.2e-202 709.9 433 83.1
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 1.5e-202 709.5 422 84.6
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 3.4e-202 708.4 428 84.1
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 4.5e-202 708.0 423 83.0
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 4.5e-202 708.0 368 95.4
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 5.8e-202 707.6 428 83.2
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 1.3e-201 706.4 394 87.6
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 1.1e-200 703.4 386 87.8
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 1.9e-200 702.6 398 87.9
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 3.2e-200 701.8 388 87.9
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 7.1e-200 700.7 428 81.3
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 1.2e-199 699.9 391 88.0
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 4.6e-199 698.0 428 81.1
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 7.9e-199 697.2 391 88.2
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 2.3e-198 695.7 416 83.9
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 6.7e-198 694.1 393 87.5
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 8.7e-198 693.7 391 85.9
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 1.1e-197 693.3 368 92.7
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 4.3e-197 691.4 380 89.7
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 4.3e-197 691.4 380 89.7
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 7.4e-197 690.6 391 86.4
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 9.6e-197 690.3 380 89.5
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 1.3e-196 689.9 401 86.5
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 1.1e-195 686.8 389 85.1
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 2.4e-195 685.6 394 85.3
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 3.1e-195 685.3 383 86.2
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 1.2e-194 683.3 386 86.5
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 9.9e-194 680.2 383 86.2
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 1.7e-193 679.5 383 85.9
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 2.9e-193 678.7 411 81.8
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 1.9e-192 676.0 383 85.6
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 1.9e-192 676.0 420 81.0
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 2.4e-192 675.6 393 83.5
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 5.5e-192 674.5 383 85.1
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 5.5e-192 674.5 416 81.7
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 7.1e-192 674.1 390 83.8
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 1.6e-191 672.9 432 78.5
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 2.3e-190 669.1 400 82.0
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 3.9e-190 668.3 379 86.0
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 5.1e-190 667.9 432 78.2
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 5.1e-190 667.9 431 78.9
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 1.1e-189 666.8 383 85.1
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 4.3e-189 664.8 431 77.5
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 5.6e-189 664.5 431 78.2
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 5.6e-189 664.5 431 78.4
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 2.8e-188 662.1 431 78.0
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 1.5e-186 656.4 431 77.5
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 2.0e-186 656.0 397 81.6
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 2.6e-186 655.6 453 73.7
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 3.8e-185 651.7 368 87.5
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 4.2e-184 648.3 381 85.6
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 6.7e-182 641.0 380 84.5
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 7.4e-181 637.5 380 84.2
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 3.1e-179 632.1 392 76.3
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 1.5e-178 629.8 379 79.9
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 1.4e-176 623.2 404 75.5
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 1.6e-175 619.8 377 82.2
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 2.3e-174 615.9 378 78.3
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 2.5e-173 612.5 379 78.1
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 2.4e-163 579.3 381 72.2
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 2.5e-160 569.3 327 83.5
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 1.0e-158 563.9 340 85.0
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 5.7e-157 558.1 384 73.2
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 1.8e-155 553.1 347 78.1
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 1.6e-154 550.1 378 70.1
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 1.2e-151 540.4 369 70.7
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 1.2e-143 513.8 378 64.8
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 8.3e-140 501.1 288 84.7
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 1.5e-128 463.8 299 77.3
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 1.6e-127 460.3 444 57.9
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 8.6e-121 438.0 267 84.3
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 8.3e-108 394.8 280 73.9
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 1.5e-72 277.7 360 42.8
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 8.2e-71 271.9 336 43.8
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 9.7e-64 248.4 133 91.0
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 2.2e-52 210.7 118 85.6
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 2.8e-47 193.7 113 81.4
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 3.2e-35 153.7 84 89.3
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 3.7e-31 140.2 125 64.0
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 1.2e-29 135.2 84 76.2
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 1.0e-28 132.1 84 73.8
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 3.4e-24 117.1 79 74.7
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 5.7e-24 116.3 57 91.2
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 1.1e-19 102.1 117 54.7
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 3.4e-16 90.5 195 31.3
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 1.3e-15 88.6 53 81.1
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 6.2e-10 69.7 40 77.5
BcaB04g18967 Brassica carinata HOM05D002170 ORTHO05D023792 2.6e-08 64.3 66 53.0
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 1.4e-06 58.5 157 28.7
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 7.0e-06 56.2 157 28.0
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 7.0e-06 56.2 157 28.0


User provided reference genes

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