Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G158800 Manihot esculenta HOM05D005823 ORTHO05D007536 4.0e-40 167.5 79 100.0
Manes.17G116600 Manihot esculenta HOM05D005823 ORTHO05D007536 1.7e-30 135.6 64 98.4
Sabra16G0228500 Salix brachista HOM05D005823 ORTHO05D007536 4.6e-28 127.5 63 87.3
Potri.001G349000 Populus trichocarpa HOM05D005823 ORTHO05D007536 1.0e-27 126.3 63 87.3
Hund20083 Selenicereus undatus HOM05D005823 ORTHO05D007536 3.9e-27 124.4 63 90.5
Hma1.2p1_0858F.1_g229370 Hydrangea macrophylla HOM05D005823 ORTHO05D007536 5.1e-27 124.0 63 87.3
EL10Ac4g08593 Beta vulgaris HOM05D005823 ORTHO05D007536 6.6e-27 123.6 63 85.7
SGA_v2.0_scaffold135G34877 Striga asiatica HOM05D005823 ORTHO05D007536 8.7e-27 123.2 63 85.7
Ah.06g187250 Amaranthus hybridus HOM05D005823 ORTHO05D007536 1.1e-26 122.9 63 85.7
CiPaw.03G038900 Carya illinoinensis HOM05D005823 ORTHO05D007536 1.1e-26 122.9 63 85.7
PGR142G1348 Punica granatum HOM05D005823 ORTHO05D007536 1.9e-26 122.1 63 85.7
CSS0040897 Camellia sinensis var. sinensis HOM05D005823 ORTHO05D007536 2.5e-26 121.7 63 87.3
CsaV3_3G042460 Cucumis sativus L. HOM05D005823 ORTHO05D007536 3.3e-26 121.3 63 82.5
Gohir.D07G227600 Gossypium hirsutum HOM05D005823 ORTHO05D007536 3.3e-26 121.3 63 82.5
Gorai.001G262500 Gossypium raimondii HOM05D005823 ORTHO05D007536 3.3e-26 121.3 63 82.5
Oeu054687.1 Olea europaea HOM05D005823 ORTHO05D007536 3.3e-26 121.3 65 81.5
MELO3C009960.2 Cucumis melo HOM05D005823 ORTHO05D007536 4.3e-26 120.9 63 82.5
Rhsim10G0021100 Rhododendron simsii HOM05D005823 ORTHO05D007536 4.3e-26 120.9 63 84.1
Sed0002272 Sechium edule HOM05D005823 ORTHO05D007536 4.3e-26 120.9 63 81.0
Actinidia06018 Actinidia chinensis HOM05D005823 ORTHO05D007536 5.6e-26 120.6 63 82.5
AUR62019725 Chenopodium quinoa HOM05D005823 ORTHO05D007536 5.6e-26 120.6 63 85.7
ClCG10G014190 Citrullus lanatus HOM05D005823 ORTHO05D007536 9.6e-26 119.8 63 81.0
Cc07_g02150 Coffea canephora HOM05D005823 ORTHO05D007536 9.6e-26 119.8 63 84.1
vmacro05834 Vaccinium macrocarpon HOM05D005823 ORTHO05D007536 9.6e-26 119.8 63 85.7
Cpa.g.sc215.12 Carica papaya HOM05D005823 ORTHO05D007536 1.2e-25 119.4 62 85.5
Eucgr.I01789 Eucalyptus grandis HOM05D005823 ORTHO05D007536 1.6e-25 119.0 63 81.0
Migut.H00112 Erythranthe guttata HOM05D005823 ORTHO05D007536 2.8e-25 118.2 63 79.4
Actinidia36091 Actinidia chinensis HOM05D005823 ORTHO05D007536 3.6e-25 117.9 62 83.9
Dinv35071 Davidia involucrata HOM05D005823 ORTHO05D007536 3.6e-25 117.9 63 81.0
Gohir.A07G220900 Gossypium hirsutum HOM05D005823 ORTHO05D007536 3.6e-25 117.9 63 81.0
GSVIVG01032464001 Vitis vinifera HOM05D005823 ORTHO05D007536 3.6e-25 117.9 63 84.1
Ciclev10017987m.g Citrus clementina HOM05D005823 ORTHO05D007536 8.1e-25 116.7 63 82.5
Sc03g0007950 Simmondsia chinensis HOM05D005823 ORTHO05D007536 1.8e-24 115.5 57 91.2
Glyma.19G069800 Glycine max HOM05D005823 ORTHO05D007536 2.4e-24 115.2 63 79.4
TAR374G0440 Trochodendron aralioides HOM05D005823 ORTHO05D007536 2.4e-24 115.2 63 77.8
ECA238G2958 Erigeron canadensis HOM05D005823 ORTHO05D007536 3.1e-24 114.8 63 81.0
Lj7A592T43 Lonicera japonica HOM05D005823 ORTHO05D007536 3.1e-24 114.8 63 76.2
COL.COLO4_28986 Corchorus olitorius HOM05D005823 ORTHO05D007536 4.0e-24 114.4 62 79.0
Duzib187G0863 Durio zibethinus HOM05D005823 ORTHO05D007536 4.0e-24 114.4 63 77.8
Glyma.16G073500 Glycine max HOM05D005823 ORTHO05D007536 5.2e-24 114.0 63 77.8
CANSAT64G0786 Cannabis sativa HOM05D005823 ORTHO05D007536 6.9e-24 113.6 63 76.2
Thecc.04G010400 Theobroma cacao HOM05D005823 ORTHO05D007536 6.9e-24 113.6 63 77.8
Lsat_1_v5_gn_2_92000 Lactuca sativa HOM05D005823 ORTHO05D007536 9.0e-24 113.2 63 79.4
THA.LOC104821071 Tarenaya hassleriana HOM05D005823 ORTHO05D007536 9.0e-24 113.2 65 78.5
VMungo1383G2893 Vigna mungo HOM05D005823 ORTHO05D007536 9.0e-24 113.2 63 79.4
Aa31LG5G10620 Aethionema arabicum HOM05D005823 ORTHO05D007536 1.2e-23 112.8 63 77.8
DCAR_015046 Daucus carota HOM05D005823 ORTHO05D007536 1.2e-23 112.8 63 77.8
Psat3g162320 Pisum sativum HOM05D005823 ORTHO05D007536 1.2e-23 112.8 63 77.8
SalBow1G1924 Salvia bowleyana HOM05D005823 ORTHO05D007536 1.2e-23 112.8 63 73.0
Atru.chr6.2309 Acer truncatum HOM05D005823 ORTHO05D007536 1.5e-23 112.5 63 77.8
Ca_14484_v3 Cicer arietinum L. HOM05D005823 ORTHO05D007536 1.5e-23 112.5 63 77.8
Thhalv10020379m.g Eutrema salsugineum HOM05D005823 ORTHO05D007536 1.5e-23 112.5 63 74.6
Nitab4.5_0004753g0050 Nicotiana tabacum HOM05D005823 ORTHO05D007536 1.5e-23 112.5 63 74.6
TPR.G30824 Trifolium pratense HOM05D005823 ORTHO05D007536 2.0e-23 112.1 63 76.2
BcaC01g04522 Brassica carinata HOM05D005823 ORTHO05D007536 2.6e-23 111.7 63 74.6
A03p32520 Brassica napus HOM05D005823 ORTHO05D007536 2.6e-23 111.7 63 74.6
C03p39600 Brassica napus HOM05D005823 ORTHO05D007536 2.6e-23 111.7 63 74.6
BolC3t16226H Brassica oleracea HOM05D005823 ORTHO05D007536 2.6e-23 111.7 63 74.6
BraA03t12421Z Brassica rapa HOM05D005823 ORTHO05D007536 2.6e-23 111.7 63 74.6
FvH4_6g50790 Fragaria vesca HOM05D005823 ORTHO05D007536 2.6e-23 111.7 63 77.8
FAN14G3736 Fragaria x ananassa HOM05D005823 ORTHO05D007536 2.6e-23 111.7 63 77.8
Prupe.3G285700 Prunus persica HOM05D005823 ORTHO05D007536 2.6e-23 111.7 63 79.4
RcHm_v2.0_Chr2g0172181 Rosa chinensis HOM05D005823 ORTHO05D007536 2.6e-23 111.7 63 79.4
Sp3g00560 Schrenkiella parvula HOM05D005823 ORTHO05D007536 2.6e-23 111.7 63 74.6
TWI36G1575 Tripterygium wilfordii HOM05D005823 ORTHO05D007536 2.6e-23 111.7 63 76.2
Carub.0003s0058 Capsella rubella HOM05D005823 ORTHO05D007536 3.4e-23 111.3 63 74.6
CAN.G544.5 Capsicum annuum HOM05D005823 ORTHO05D007536 4.4e-23 110.9 63 74.6
RcHm_v2.0_Chr2g0172101 Rosa chinensis HOM05D005823 ORTHO05D007536 4.4e-23 110.9 63 77.8
AL3G10660 Arabidopsis lyrata HOM05D005823 ORTHO05D007536 5.8e-23 110.5 63 73.0
CARHR075440 Cardamine hirsuta HOM05D005823 ORTHO05D007536 5.8e-23 110.5 63 76.2
PGSC0003DMG400030092 Solanum tuberosum HOM05D005823 ORTHO05D007536 5.8e-23 110.5 63 76.2
FAN09G0265 Fragaria x ananassa HOM05D005823 ORTHO05D007536 7.6e-23 110.2 63 76.2
AT3G01510 Arabidopsis thaliana HOM05D005823 ORTHO05D007536 9.9e-23 109.8 63 73.0
Peaxi162Scf00700g00625 Petunia axillaris HOM05D005823 ORTHO05D007536 9.9e-23 109.8 63 76.2
Solyc12g062250.2 Solanum lycopersicum HOM05D005823 ORTHO05D007536 1.3e-22 109.4 64 75.0
HanXRQChr14g0450321 Helianthus annuus HOM05D005823 ORTHO05D007536 1.7e-22 109.0 63 76.2
Nitab4.5_0004348g0040 Nicotiana tabacum HOM05D005823 ORTHO05D007536 1.7e-22 109.0 63 71.4
QL02p076317 Quercus lobata HOM05D005823 ORTHO05D007536 1.7e-22 109.0 63 76.2
AUR62035471 Chenopodium quinoa HOM05D005823 ORTHO05D007536 2.9e-22 108.2 54 88.9
Phvul.008G155300 Phaseolus vulgaris HOM05D005823 ORTHO05D007536 2.9e-22 108.2 63 74.6
Lj1g0008834 Lotus japonicus HOM05D005823 ORTHO05D007536 3.8e-22 107.8 63 74.6
Lalb_Chr10g0093861 Lupinus albus HOM05D005823 ORTHO05D007536 4.9e-22 107.5 63 74.6
Sopen12g025140 Solanum pennellii HOM05D005823 ORTHO05D007536 4.9e-22 107.5 63 74.6
MD09G1032300 Malus domestica HOM05D005823 ORTHO05D007536 8.4e-22 106.7 63 76.2
Nn4g22771 Nelumbo nucifera HOM05D005823 ORTHO05D007536 1.9e-21 105.5 63 74.6
arahy.Tifrunner.gnm1.ann1.AB8GL3 Arachis hypogaea HOM05D005823 ORTHO05D007536 5.4e-21 104.0 62 69.4
A03p28560 Brassica napus HOM05D005823 ORTHO05D007536 5.4e-21 104.0 64 68.8
FAN05G1760 Fragaria x ananassa HOM05D005823 ORTHO05D007536 5.4e-21 104.0 63 71.4
arahy.Tifrunner.gnm1.ann1.1I70XP Arachis hypogaea HOM05D005823 ORTHO05D007536 9.3e-21 103.2 60 71.7
Lsat_1_v5_gn_1_56220 Lactuca sativa HOM05D005823 ORTHO05D007536 3.5e-20 101.3 63 69.8
Lsat_1_v5_gn_4_122721 Lactuca sativa HOM05D005823 ORTHO05D007536 3.5e-20 101.3 63 69.8
Lsat_1_v5_gn_8_101260 Lactuca sativa HOM05D005823 ORTHO05D007536 3.5e-20 101.3 63 69.8
Lsat_1_v5_gn_9_122760 Lactuca sativa HOM05D005823 ORTHO05D007536 3.5e-20 101.3 63 69.8
PSO832G4481 Papaver somniferum HOM05D005823 ORTHO05D007536 3.5e-20 101.3 63 66.7
Sopen12g025160 Solanum pennellii HOM05D005823 ORTHO05D007536 3.5e-20 101.3 62 72.6
PSO063G0513 Papaver somniferum HOM05D005823 ORTHO05D007536 6.0e-20 100.5 63 66.7
unitig_62.g23151 Utricularia gibba HOM05D005823 ORTHO05D007536 1.3e-19 99.4 56 73.2
Solyc12g062260.2 Solanum lycopersicum HOM05D005823 ORTHO05D007536 3.9e-19 97.8 62 69.4
Aqoxy3G02952 Aquilegia oxysepala HOM05D005823 ORTHO05D007536 8.7e-19 96.7 63 63.5
MBI16_g05631_MAGBIO Magnolia biondii HOM05D005823 ORTHO05D007536 1.1e-18 96.3 62 64.5
ATR0730G038 Amborella trichopoda HOM05D005823 ORTHO05D007536 1.5e-18 95.9 62 66.1
CDE11G0210 Ceratophyllum demersum HOM05D005823 ORTHO05D007536 1.9e-18 95.5 65 63.1
Zm00001eb042540 Zea mays HOM05D005823 ORTHO05D007536 3.3e-18 94.7 60 68.3
HPP92_024322 Vanilla planifolia HOM05D005823 ORTHO05D007536 9.6e-18 93.2 57 70.2
Os08g0379300 Oryza sativa ssp. japonica HOM05D005823 ORTHO05D007536 1.3e-17 92.8 60 65.0
SEGI_19763 Sequoiadendron giganteum HOM05D005823 ORTHO05D007536 1.8e-16 89.0 66 63.6
A03p32540 Brassica napus HOM05D005823 ORTHO05D007536 3.1e-16 88.2 50 72.0
BraA03t12423Z Brassica rapa HOM05D005823 ORTHO05D007536 3.1e-16 88.2 50 72.0
SMO052G0001 Selaginella moellendorffii HOM05D005823 ORTHO05D007536 4.9e-14 80.9 55 60.0
SMO119G0254 Selaginella moellendorffii HOM05D005823 ORTHO05D007536 4.9e-14 80.9 55 60.0
Mapoly0060s0015 Marchantia polymorpha HOM05D005823 ORTHO05D007536 8.4e-14 80.1 54 61.1
AagrBONN_evm.TU.Sc2ySwM_228.3021 Anthoceros agrestis HOM05D005823 ORTHO05D007536 1.1e-13 79.7 54 63.0
FAN02G0427 Fragaria x ananassa HOM05D005823 ORTHO05D007536 1.1e-13 79.7 44 77.3
Pp3c16_6290 Physcomitrium patens HOM05D005823 ORTHO05D007536 2.3e-11 72.0 54 51.9
C03p39620 Brassica napus HOM05D005823 ORTHO05D007536 1.1e-10 69.7 42 71.4
BolC3t16228H Brassica oleracea HOM05D005123 ORTHO05D002627 4.3e-10 67.8 42 66.7
CBR_g34939 Chara braunii HOM05D000019 ORTHO05D000048 5.6e-10 67.4 49 49.0
Lsat_1_v5_gn_6_18441 Lactuca sativa HOM05D005823 ORTHO05D007536 5.3e-08 60.8 34 76.5


User provided reference genes

Program Settings