Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 1.4e-171 606.3 336 100.0
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 9.6e-160 567.0 338 94.4
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.1e-158 563.5 337 93.2
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 1.1e-158 563.5 337 93.2
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 2.4e-158 562.4 337 92.3
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 4.0e-158 561.6 336 92.9
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 5.3e-158 561.2 337 92.9
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 9.0e-158 560.5 336 93.2
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.5e-157 559.7 337 91.4
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 2.0e-157 559.3 338 92.6
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 3.4e-157 558.5 336 92.6
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 3.4e-157 558.5 337 92.6
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 5.8e-157 557.8 349 90.0
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 3.8e-156 555.1 338 90.5
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 3.8e-156 555.1 337 92.6
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 4.9e-156 554.7 337 91.4
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 1.1e-155 553.5 339 91.7
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 1.9e-155 552.7 337 92.0
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 1.9e-155 552.7 337 91.4
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 3.2e-155 552.0 337 87.2
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 3.2e-155 552.0 336 91.4
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 4.2e-155 551.6 352 89.2
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 5.5e-155 551.2 336 89.9
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 5.5e-155 551.2 337 90.8
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 7.1e-155 550.8 337 91.1
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 9.3e-155 550.4 336 91.4
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 1.2e-154 550.1 337 91.1
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 2.7e-154 548.9 336 90.2
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 3.5e-154 548.5 337 90.8
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 7.9e-154 547.4 337 90.2
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 1.8e-153 546.2 337 90.2
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 3.9e-153 545.0 338 90.2
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 6.7e-153 544.3 337 90.2
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 6.7e-153 544.3 337 90.5
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 1.9e-152 542.7 336 87.8
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 9.7e-152 540.4 337 89.6
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 2.2e-151 539.3 337 89.3
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 2.8e-151 538.9 341 89.1
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 1.1e-150 537.0 337 89.0
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 1.1e-150 537.0 336 89.0
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 1.1e-150 537.0 336 89.0
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 2.4e-150 535.8 337 83.7
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 3.1e-150 535.4 336 90.5
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 3.1e-150 535.4 337 88.4
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 4.1e-150 535.0 340 89.7
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 1.2e-149 533.5 336 88.4
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 3.4e-149 531.9 336 87.5
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 4.5e-149 531.6 337 88.7
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 4.5e-149 531.6 337 88.7
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.0e-148 530.4 342 87.7
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 1.0e-148 530.4 337 88.4
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 1.0e-148 530.4 337 88.4
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 1.3e-148 530.0 365 83.8
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 1.3e-148 530.0 340 87.4
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 1.7e-148 529.6 340 89.1
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 2.2e-148 529.3 337 87.8
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 6.5e-148 527.7 337 88.1
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 6.5e-148 527.7 336 89.9
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 8.5e-148 527.3 338 84.6
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 8.5e-148 527.3 338 87.0
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 1.4e-147 526.6 338 84.9
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 1.4e-147 526.6 336 88.7
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 1.4e-147 526.6 337 86.9
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 2.5e-147 525.8 338 86.1
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 5.5e-147 524.6 338 84.0
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 7.2e-147 524.2 321 91.3
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 2.1e-146 522.7 329 90.9
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 3.6e-146 521.9 372 81.5
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 1.0e-145 520.4 339 86.7
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 1.0e-145 520.4 359 83.6
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 1.4e-145 520.0 355 83.9
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 1.4e-145 520.0 355 83.9
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 1.8e-145 519.6 337 86.4
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 3.0e-145 518.8 337 85.2
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 1.1e-144 516.9 339 86.4
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 7.4e-144 514.2 353 84.1
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.3e-143 513.5 336 83.6
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 1.8e-142 509.6 337 86.4
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 5.3e-142 508.1 345 84.1
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 1.2e-141 506.9 330 86.7
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 4.5e-141 505.0 321 89.7
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 1.0e-140 503.8 377 78.5
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 1.0e-140 503.8 338 85.2
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 2.9e-140 502.3 338 83.4
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 2.9e-140 502.3 338 83.4
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 2.9e-140 502.3 321 88.8
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 2.9e-140 502.3 337 85.5
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 3.8e-140 501.9 347 82.4
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 3.8e-140 501.9 337 86.1
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 5.5e-139 498.0 347 81.8
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 5.5e-139 498.0 336 78.6
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 7.2e-139 497.7 340 80.9
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 1.0e-137 493.8 325 86.8
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 1.0e-137 493.8 325 86.8
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 1.4e-137 493.4 331 84.3
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 3.0e-137 492.3 348 81.6
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 3.0e-137 492.3 339 82.6
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 7.4e-136 487.6 366 77.0
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.7e-135 486.5 337 84.9
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 2.2e-135 486.1 339 82.0
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 4.1e-134 481.9 336 80.1
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 9.1e-134 480.7 336 75.3
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 2.2e-132 476.1 305 89.8
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 6.5e-132 474.6 366 78.4
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 6.5e-132 474.6 366 78.4
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.4e-129 466.8 336 79.2
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 1.4e-126 456.8 337 79.2
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 1.6e-125 453.4 274 97.1
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 4.0e-121 438.7 284 87.3
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 8.8e-121 437.6 334 80.2
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 3.3e-120 435.6 352 73.6
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 1.7e-116 423.3 516 54.7
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 7.5e-112 407.9 224 89.3
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 1.4e-110 403.7 321 77.9
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.7e-108 396.7 339 74.9
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 1.6e-106 390.2 319 76.8
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 1.0e-105 387.5 254 90.9
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.2e-95 353.2 337 67.4
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 6.4e-95 351.7 278 74.8
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 2.0e-93 346.7 336 66.4
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 3.4e-88 329.3 382 49.2
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 3.0e-84 316.2 329 55.3
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 1.4e-81 307.4 147 98.0
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 4.3e-67 259.2 180 74.4
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 9.0e-65 251.5 213 77.5
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 1.5e-59 234.2 326 44.2
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 3.5e-53 213.0 115 87.0
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 4.2e-46 189.5 165 69.1
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 7.4e-43 178.7 82 98.8
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 6.9e-41 172.2 91 94.5
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 5.0e-39 166.0 90 98.9
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.1e-35 154.8 90 90.0
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 5.0e-23 112.8 55 98.2
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.4e-22 111.3 64 93.8
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 1.5e-16 91.3 201 27.9
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.7e-15 87.8 266 28.6
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 5.0e-15 86.3 78 84.6
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 3.2e-14 83.6 64 64.1
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 4.7e-13 79.7 39 92.3
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.8e-12 75.5 41 90.2
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 3.3e-11 73.6 54 66.7
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 2.8e-10 70.5 45 75.6
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.4e-09 68.2 30 93.3


User provided reference genes

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