Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G062300 Manihot esculenta HOM05D005033 ORTHO05D007005 7.4e-287 989.9 537 100.0
Potri.008G029100 Populus trichocarpa HOM05D005033 ORTHO05D007005 6.8e-240 833.9 537 76.4
Sabra10G0180300 Salix brachista HOM05D005033 ORTHO05D007005 1.2e-236 823.2 542 75.1
Potri.010G232500 Populus trichocarpa HOM05D005033 ORTHO05D007005 1.6e-236 822.8 538 78.3
GSVIVG01034665001 Vitis vinifera HOM05D005033 ORTHO05D007005 1.7e-230 802.7 537 72.3
Atru.chr13.2088 Acer truncatum HOM05D005033 ORTHO05D007005 2.4e-229 798.9 529 73.3
MELO3C019859.2 Cucumis melo HOM05D005033 ORTHO05D007005 1.1e-226 790.0 523 72.8
Hma1.2p1_0446F.1_g154670 Hydrangea macrophylla HOM05D005033 ORTHO05D007005 1.9e-226 789.3 535 74.6
ClCG09G006560 Citrullus lanatus HOM05D005033 ORTHO05D007005 2.5e-226 788.9 528 72.9
CsaV3_2G032850 Cucumis sativus L. HOM05D005033 ORTHO05D007005 2.8e-225 785.4 523 72.3
Eucgr.J01030 Eucalyptus grandis HOM05D005033 ORTHO05D007005 2.8e-225 785.4 536 72.2
Actinidia22298 Actinidia chinensis HOM05D005033 ORTHO05D007005 6.3e-222 774.2 533 70.9
Duzib130G0002 Durio zibethinus HOM05D005033 ORTHO05D007005 1.2e-220 770.0 535 70.1
Duzib138G0857 Durio zibethinus HOM05D005033 ORTHO05D007005 1.0e-219 766.9 535 69.9
Thecc.01G170700 Theobroma cacao HOM05D005033 ORTHO05D007005 2.5e-218 762.3 536 72.4
Gorai.001G212400 Gossypium raimondii HOM05D005033 ORTHO05D007005 3.3e-218 761.9 533 71.3
Gohir.A07G183600 Gossypium hirsutum HOM05D005033 ORTHO05D007005 7.3e-218 760.8 516 73.3
PGR083G2464 Punica granatum HOM05D005033 ORTHO05D007005 7.3e-218 760.8 517 71.6
Ciclev10003719m.g Citrus clementina HOM05D005033 ORTHO05D007005 2.1e-217 759.2 538 70.4
Gohir.D07G190300 Gossypium hirsutum HOM05D005033 ORTHO05D007005 2.1e-217 759.2 535 69.2
VMungo0720G2563 Vigna mungo HOM05D005033 ORTHO05D007005 6.1e-217 757.7 538 68.4
TWI34G0149 Tripterygium wilfordii HOM05D005033 ORTHO05D007005 2.3e-216 755.7 521 72.6
TAR633G0665 Trochodendron aralioides HOM05D005033 ORTHO05D007005 6.8e-216 754.2 535 69.3
Glyma.10G200300 Glycine max HOM05D005033 ORTHO05D007005 3.4e-215 751.9 538 68.2
Glyma.20G190200 Glycine max HOM05D005033 ORTHO05D007005 4.4e-215 751.5 538 68.4
Peaxi162Scf00450g00616 Petunia axillaris HOM05D005033 ORTHO05D007005 1.7e-214 749.6 509 70.5
CANSAT11G2161 Cannabis sativa HOM05D005033 ORTHO05D007005 2.2e-214 749.2 539 71.6
Solyc05g008190.3 Solanum lycopersicum HOM05D005033 ORTHO05D007005 2.9e-214 748.8 537 68.2
Sopen05g004030 Solanum pennellii HOM05D005033 ORTHO05D007005 1.1e-213 746.9 537 68.2
CAN.G1334.3 Capsicum annuum HOM05D005033 ORTHO05D007005 1.9e-213 746.1 537 67.6
Nn8g40819 Nelumbo nucifera HOM05D005033 ORTHO05D007005 2.4e-213 745.7 533 68.7
Nitab4.5_0004816g0020 Nicotiana tabacum HOM05D005033 ORTHO05D007005 4.1e-213 745.0 529 69.0
DCAR_019312 Daucus carota HOM05D005033 ORTHO05D007005 1.0e-211 740.3 538 69.1
Sed0023623 Sechium edule HOM05D005033 ORTHO05D007005 3.0e-211 738.8 525 71.2
PGSC0003DMG400030544 Solanum tuberosum HOM05D005033 ORTHO05D007005 1.1e-210 736.9 513 69.6
arahy.Tifrunner.gnm1.ann1.BLA122 Arachis hypogaea HOM05D005033 ORTHO05D007005 1.2e-209 733.4 520 72.1
Phvul.007G144800 Phaseolus vulgaris HOM05D005033 ORTHO05D007005 1.6e-209 733.0 538 66.0
Hund09612 Selenicereus undatus HOM05D005033 ORTHO05D007005 2.1e-209 732.6 526 69.0
Lj5g0024582 Lotus japonicus HOM05D005033 ORTHO05D007005 8.1e-209 730.7 531 66.3
MD07G1075700 Malus domestica HOM05D005033 ORTHO05D007005 4.0e-208 728.4 537 67.8
THA.LOC104826968 Tarenaya hassleriana HOM05D005033 ORTHO05D007005 4.0e-208 728.4 450 75.6
Cc02_g10440 Coffea canephora HOM05D005033 ORTHO05D007005 5.8e-207 724.5 514 68.5
Lalb_Chr21g0313111 Lupinus albus HOM05D005033 ORTHO05D007005 1.7e-206 723.0 524 67.4
COL.COLO4_07176 Corchorus olitorius HOM05D005033 ORTHO05D007005 8.3e-206 720.7 588 65.8
Prupe.2G096600 Prunus persica HOM05D005033 ORTHO05D007005 1.4e-205 719.9 537 66.7
Lj4A548T13 Lonicera japonica HOM05D005033 ORTHO05D007005 7.1e-205 717.6 521 67.4
Ca_10465_v3 Cicer arietinum L. HOM05D005033 ORTHO05D007005 1.6e-204 716.5 524 66.8
Sed0004918 Sechium edule HOM05D005033 ORTHO05D007005 2.1e-204 716.1 527 68.3
CSS0020475 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 2.7e-204 715.7 538 66.9
QL05p060417 Quercus lobata HOM05D005033 ORTHO05D007005 3.5e-204 715.3 518 70.5
Sc09g0005810 Simmondsia chinensis HOM05D005033 ORTHO05D007005 2.3e-203 712.6 524 65.8
arahy.Tifrunner.gnm1.ann1.FAT33H Arachis hypogaea HOM05D005033 ORTHO05D007005 1.1e-202 710.3 573 65.6
AUR62018476 Chenopodium quinoa HOM05D005033 ORTHO05D007005 3.3e-202 708.8 534 65.0
EL10Ac3g05920 Beta vulgaris HOM05D005033 ORTHO05D007005 4.3e-202 708.4 513 68.2
MSTRG.405 Avicennia marina HOM05D005033 ORTHO05D007005 7.3e-202 707.6 537 65.2
MD13G1165600 Malus domestica HOM05D005033 ORTHO05D007005 7.3e-202 707.6 544 68.4
Medtr1g090877 Medicago truncatula HOM05D005033 ORTHO05D007005 2.8e-201 705.7 524 65.3
Aqoxy7G00894 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 3.6e-201 705.3 540 65.2
CARHR085050 Cardamine hirsuta HOM05D005033 ORTHO05D007005 8.1e-201 704.1 537 65.7
Lj4A576G37 Lonicera japonica HOM05D005033 ORTHO05D007005 8.1e-201 704.1 521 66.6
AL3G21930 Arabidopsis lyrata HOM05D005033 ORTHO05D007005 8.9e-200 700.7 533 68.7
AT3G10530 Arabidopsis thaliana HOM05D005033 ORTHO05D007005 1.2e-199 700.3 533 69.0
Sp3g08810 Schrenkiella parvula HOM05D005033 ORTHO05D007005 2.6e-199 699.1 533 65.7
BcaNung04933 Brassica carinata HOM05D005033 ORTHO05D007005 1.7e-198 696.4 535 65.8
Carub.0003s0977 Capsella rubella HOM05D005033 ORTHO05D007005 2.2e-198 696.0 533 68.3
Aqoxy6G00730 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 3.7e-198 695.3 518 66.8
BolC1t05387H Brassica oleracea HOM05D005033 ORTHO05D007005 1.1e-197 693.7 531 65.2
BcaNung06294 Brassica carinata HOM05D005033 ORTHO05D007005 1.4e-197 693.3 531 65.0
BraA05t22654Z Brassica rapa HOM05D005033 ORTHO05D007005 3.2e-197 692.2 531 64.6
C05p57510 Brassica napus HOM05D005033 ORTHO05D004473 2.1e-196 689.5 534 64.2
A01p41690 Brassica napus HOM05D005033 ORTHO05D004473 2.7e-196 689.1 535 64.9
BraA01t04244Z Brassica rapa HOM05D005033 ORTHO05D007005 6.0e-196 688.0 450 73.6
BolC5t34408H Brassica oleracea HOM05D005033 ORTHO05D004473 7.8e-196 687.6 527 64.7
Psat6g174240 Pisum sativum HOM05D005033 ORTHO05D007005 2.3e-195 686.0 524 63.7
BcaB04g21233 Brassica carinata HOM05D005033 ORTHO05D007005 3.0e-195 685.6 531 64.6
A05p38630 Brassica napus HOM05D005033 ORTHO05D004473 1.1e-194 683.7 534 63.9
ECA236G1450 Erigeron canadensis HOM05D005033 ORTHO05D007005 5.6e-194 681.4 516 64.5
Rhsim02G0215300 Rhododendron simsii HOM05D005033 ORTHO05D007005 8.1e-193 677.6 573 62.1
Nitab4.5_0006512g0050 Nicotiana tabacum HOM05D005033 ORTHO05D007005 1.4e-192 676.8 533 64.2
CiPaw.12G008100 Carya illinoinensis HOM05D005033 ORTHO05D007005 8.9e-192 674.1 515 64.5
Migut.F01668 Erythranthe guttata HOM05D005033 ORTHO05D007005 1.2e-191 673.7 539 62.7
Ah.01g017010 Amaranthus hybridus HOM05D005033 ORTHO05D007005 2.0e-191 672.9 508 64.8
Dinv31275 Davidia involucrata HOM05D005033 ORTHO05D007005 3.2e-189 665.6 452 72.3
Aa31LG4G2160 Aethionema arabicum HOM05D005033 ORTHO05D007005 1.2e-188 663.7 534 66.9
RcHm_v2.0_Chr1g0336741 Rosa chinensis HOM05D005033 ORTHO05D007005 2.1e-188 662.9 538 62.3
TPR.G37792 Trifolium pratense HOM05D005033 ORTHO05D007005 2.7e-188 662.5 524 65.3
Thhalv10020478m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 3.5e-188 662.1 534 61.6
FAN10G0702 Fragaria x ananassa HOM05D005033 ORTHO05D007005 5.1e-187 658.3 536 61.9
Haze_05486 Corylus avellana HOM05D005033 ORTHO05D007005 7.3e-186 654.4 610 56.2
vmacro04570 Vaccinium macrocarpon HOM05D005033 ORTHO05D007005 1.3e-185 653.7 583 60.2
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 3.6e-185 652.1 525 61.1
CSS0041797 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 1.1e-184 650.6 539 62.3
FAN03G1010 Fragaria x ananassa HOM05D005033 ORTHO05D007005 1.8e-184 649.8 536 61.4
HanXRQChr04g0126221 Helianthus annuus HOM05D005033 ORTHO05D007005 2.0e-183 646.4 520 61.5
unitig_899.g15062 Utricularia gibba HOM05D005033 ORTHO05D007005 6.4e-182 641.3 533 60.8
CDE08G1035 Ceratophyllum demersum HOM05D005033 ORTHO05D007005 2.4e-181 639.4 514 61.9
SHI01926 Sapria himalayana HOM05D005033 ORTHO05D007005 3.2e-181 639.0 570 58.8
HPP92_022999 Vanilla planifolia HOM05D005033 ORTHO05D007005 1.9e-178 629.8 518 60.0
FvH4_7g06900 Fragaria vesca HOM05D005033 ORTHO05D007005 9.6e-178 627.5 536 59.9
Actinidia13190 Actinidia chinensis HOM05D005033 ORTHO05D007005 1.6e-177 626.7 432 70.1
Lsat_1_v5_gn_5_142541 Lactuca sativa HOM05D005033 ORTHO05D007005 8.4e-174 614.4 494 65.0
Os01g0183100 Oryza sativa ssp. japonica HOM05D005033 ORTHO05D007005 5.5e-173 611.7 525 64.2
PSO063G4428 Papaver somniferum HOM05D005033 ORTHO05D007005 1.2e-172 610.5 552 55.3
PSO339G5947 Papaver somniferum HOM05D005033 ORTHO05D007005 1.1e-170 604.0 552 55.6
Oeu027297.1 Olea europaea HOM05D005033 ORTHO05D007005 1.1e-168 597.4 564 54.8
Zm00001eb272000 Zea mays HOM05D005033 ORTHO05D007005 2.4e-168 596.3 513 58.9
FAN06G3772 Fragaria x ananassa HOM05D005033 ORTHO05D007005 1.0e-166 590.9 536 57.8
FAN01G1898 Fragaria x ananassa HOM05D005033 ORTHO05D007005 9.3e-165 584.3 535 57.4
ATR0598G298 Amborella trichopoda HOM05D005033 ORTHO05D007005 4.6e-164 582.0 510 57.5
Nitab4.5_0004816g0100 Nicotiana tabacum HOM05D005033 ORTHO05D007005 1.0e-163 580.9 472 63.6
CSS0012290 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 1.1e-162 577.4 511 62.6
BcaC05g29453 Brassica carinata HOM05D005033 ORTHO05D004473 2.1e-161 573.2 391 70.6
Sc12g0008670 Simmondsia chinensis HOM05D005033 ORTHO05D007005 7.2e-157 558.1 404 66.8
Ciclev10003777m.g Citrus clementina HOM05D005033 ORTHO05D007005 9.1e-144 514.6 510 56.1
PSO591G0084 Papaver somniferum HOM05D005033 ORTHO05D007005 9.1e-144 514.6 429 59.0
Mapoly0082s0024 Marchantia polymorpha HOM05D005033 ORTHO05D007005 1.2e-132 477.6 504 51.6
SMO367G1111 Selaginella moellendorffii HOM05D005033 ORTHO05D007005 1.7e-121 440.7 521 47.0
Prupe.1G365200 Prunus persica HOM05D005033 ORTHO05D007005 1.1e-120 438.0 448 55.8
Pp3c1_3590 Physcomitrium patens HOM05D005033 ORTHO05D007005 1.8e-120 437.2 498 43.4
AagrBONN_evm.TU.Sc2ySwM_362.274 Anthoceros agrestis HOM05D005033 ORTHO05D007005 7.7e-119 431.8 477 45.9
BcaC05g29452 Brassica carinata HOM05D005033 ORTHO05D007005 4.4e-114 416.0 328 64.3
Cre12.g502800 Chlamydomonas reinhardtii HOM05D005033 ORTHO05D007005 3.5e-111 406.4 428 45.3
CBR_g12704 Chara braunii HOM05D005033 ORTHO05D007005 8.6e-110 401.7 405 47.4
AUR62020948 Chenopodium quinoa HOM05D005033 ORTHO05D007005 3.6e-108 396.4 310 62.6
MCO04G094 Micromonas commoda HOM05D005033 ORTHO05D007005 4.0e-107 392.9 439 42.6
Thhalv10016037m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 2.4e-104 383.6 369 56.4
PRCOL_00001195 Prasinoderma coloniale HOM05D005033 ORTHO05D007005 3.5e-103 379.8 430 45.6
Peaxi162Scf00159g00012 Petunia axillaris HOM05D005033 ORTHO05D007005 2.1e-100 370.5 261 69.7
Nn2g13935 Nelumbo nucifera HOM05D005033 ORTHO05D007005 7.3e-93 345.5 270 64.1
Cpa.g.sc116.23 Carica papaya HOM05D005033 ORTHO05D007005 8.9e-91 338.6 524 41.8
SEGI_20556 Sequoiadendron giganteum HOM05D005033 ORTHO05D007005 1.7e-86 324.3 357 47.1
Cfa025315 Carpinus fangiana HOM05D005033 ORTHO05D007005 2.8e-76 290.4 445 37.1
Actinidia36730 Actinidia chinensis HOM05D005033 ORTHO05D007005 4.2e-40 170.2 105 74.3
RcHm_v2.0_Chr1g0336811 Rosa chinensis HOM05D005033 ORTHO05D007005 7.9e-31 139.4 125 54.4
RcHm_v2.0_Chr1g0336801 Rosa chinensis HOM05D005033 ORTHO05D007005 9.7e-21 105.9 65 73.8
Peaxi162Scf00159g00111 Petunia axillaris HOM05D005033 ORTHO05D007005 1.1e-19 102.4 73 68.5
CAN.G1393.2 Capsicum annuum HOM05D005033 ORTHO05D005387 3.1e-19 100.9 152 42.1
MD05G1224900 Malus domestica HOM05D005033 ORTHO05D007005 2.1e-15 88.2 64 70.3
MD09G1267900 Malus domestica HOM05D005033 ORTHO05D007005 8.0e-15 86.3 55 80.0
MD08G1003200 Malus domestica HOM05D005033 ORTHO05D245307 1.3e-12 79.0 70 60.0
MD08G1003300 Malus domestica HOM05D005033 ORTHO05D036613 3.7e-12 77.4 63 54.0
DCAR_031698 Daucus carota HOM05D003335 ORTHO05D003853 4.5e-10 70.5 286 25.2
PSO832G0093 Papaver somniferum HOM05D003335 ORTHO05D003853 1.7e-09 68.6 244 25.0
PSO764G0342 Papaver somniferum HOM05D003335 ORTHO05D003853 6.5e-09 66.6 244 24.6
TAR365G0561 Trochodendron aralioides HOM05D003335 ORTHO05D003853 2.5e-08 64.7 244 23.8
arahy.Tifrunner.gnm1.ann1.5U8ZY7 Arachis hypogaea HOM05D005033 ORTHO05D083851 3.2e-08 64.3 57 57.9
Prupe.1G047500 Prunus persica HOM05D003335 ORTHO05D003853 3.2e-08 64.3 160 28.1
arahy.Tifrunner.gnm1.ann1.R7HTY3 Arachis hypogaea HOM05D002393 ORTHO05D002845 4.2e-08 63.9 49 65.3
Gohir.D09G228600 Gossypium hirsutum HOM05D003335 ORTHO05D003853 5.5e-08 63.5 244 23.0
Mapoly0157s0022 Marchantia polymorpha HOM05D003335 ORTHO05D003853 5.5e-08 63.5 202 24.3
Oeu011224.1 Olea europaea HOM05D003335 ORTHO05D003853 5.5e-08 63.5 165 24.2
Gohir.A09G227600 Gossypium hirsutum HOM05D003335 ORTHO05D003853 7.2e-08 63.2 244 23.4
Nn7g38170 Nelumbo nucifera HOM05D003335 ORTHO05D003853 7.2e-08 63.2 164 26.2
Aqoxy2G03744 Aquilegia oxysepala HOM05D003335 ORTHO05D003853 9.4e-08 62.8 247 22.7
CDE08G0175 Ceratophyllum demersum HOM05D003335 ORTHO05D003853 9.4e-08 62.8 164 23.2
Pp3c6_19920 Physcomitrium patens HOM05D003335 ORTHO05D003853 1.2e-07 62.4 175 24.6
Duzib151G0619 Durio zibethinus HOM05D003335 ORTHO05D003853 1.6e-07 62.0 244 23.4
Gorai.006G251300 Gossypium raimondii HOM05D003335 ORTHO05D003853 1.6e-07 62.0 244 23.0
Os10g0466300 Oryza sativa ssp. japonica HOM05D003335 ORTHO05D003853 3.6e-07 60.8 164 26.2
Glyma.20G084500 Glycine max HOM05D003335 ORTHO05D003853 4.7e-07 60.5 165 23.6
MBI10_g35441_MAGBIO Magnolia biondii HOM05D003335 ORTHO05D003853 4.7e-07 60.5 165 24.8
Pp3c5_9900 Physcomitrium patens HOM05D003335 ORTHO05D003853 4.7e-07 60.5 144 25.7
Potri.010G066000 Populus trichocarpa HOM05D003335 ORTHO05D003853 4.7e-07 60.5 165 24.8
Sabra08G0131000 Salix brachista HOM05D003335 ORTHO05D003853 4.7e-07 60.5 165 24.8
CDE02G2483 Ceratophyllum demersum HOM05D003335 ORTHO05D003853 6.1e-07 60.1 164 22.6
Lalb_Chr19g0128501 Lupinus albus HOM05D003335 ORTHO05D003853 6.1e-07 60.1 165 23.6
Zm00001eb046370 Zea mays HOM05D003335 ORTHO05D003853 6.1e-07 60.1 165 24.2
Zm00001eb222190 Zea mays HOM05D003335 ORTHO05D003853 6.1e-07 60.1 165 24.2
Glyma.10G133700 Glycine max HOM05D003335 ORTHO05D003853 8.0e-07 59.7 165 23.6
Lalb_Chr01g0020321 Lupinus albus HOM05D003335 ORTHO05D003853 8.0e-07 59.7 165 23.6
VMungo0720G1182 Vigna mungo HOM05D003335 ORTHO05D003853 8.0e-07 59.7 165 23.6
Potri.008G171600 Populus trichocarpa HOM05D003335 ORTHO05D003853 1.0e-06 59.3 165 24.8
AagrBONN_evm.TU.Sc2ySwM_344.1571 Anthoceros agrestis HOM05D003335 ORTHO05D003853 1.8e-06 58.5 204 25.5
Duzib052G0269 Durio zibethinus HOM05D003335 ORTHO05D003853 1.8e-06 58.5 165 25.5
Sabra10G0041200 Salix brachista HOM05D003335 ORTHO05D003853 1.8e-06 58.5 165 24.8
THA.LOC104816006 Tarenaya hassleriana HOM05D003335 ORTHO05D003853 1.8e-06 58.5 227 24.7
EL10Ac3g04947 Beta vulgaris HOM05D003335 ORTHO05D003853 3.0e-06 57.8 164 23.8
Carub.0001s0372 Capsella rubella HOM05D003335 ORTHO05D003853 3.0e-06 57.8 160 23.1
Phvul.007G270500 Phaseolus vulgaris HOM05D003335 ORTHO05D003853 3.0e-06 57.8 165 23.6
SalBow3G1035 Salvia bowleyana HOM05D003335 ORTHO05D003853 3.0e-06 57.8 168 23.2
AL4G28990 Arabidopsis lyrata HOM05D003335 ORTHO05D003853 4.0e-06 57.4 160 23.8
MBI02_g01118_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 4.0e-06 57.4 227 21.1
Cpa.g.sc44.4 Carica papaya HOM05D003335 ORTHO05D003853 5.2e-06 57.0 112 28.6
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 6.8e-06 56.6 148 24.3
Carub.0004s1496 Capsella rubella HOM05D003335 ORTHO05D003853 6.8e-06 56.6 160 23.8
THA.LOC104801067 Tarenaya hassleriana HOM05D003335 ORTHO05D003853 6.8e-06 56.6 162 24.7


User provided reference genes

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