Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 9.2e-198 693.3 346 100.0
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 2.6e-123 446.0 315 69.8
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 6.5e-119 431.4 372 60.5
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 1.5e-110 403.7 327 60.9
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 8.0e-109 397.9 317 61.8
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.4e-108 397.1 328 61.6
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 2.3e-108 396.4 319 61.1
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 3.0e-108 396.0 318 61.3
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 4.0e-108 395.6 323 60.7
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 6.7e-108 394.8 319 61.1
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 8.8e-108 394.4 320 60.3
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 2.0e-107 393.3 328 60.4
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 5.7e-107 391.7 315 61.0
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 7.5e-107 391.3 316 60.8
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 2.8e-106 389.4 323 59.8
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 8.2e-106 387.9 323 59.4
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 1.4e-105 387.1 316 60.8
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 2.4e-105 386.3 317 60.9
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 3.1e-105 386.0 321 59.8
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 9.1e-105 384.4 327 60.6
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 1.2e-104 384.0 328 61.0
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 4.5e-104 382.1 316 60.8
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 4.5e-104 382.1 323 58.2
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 5.9e-104 381.7 320 60.6
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 1.0e-103 380.9 318 59.7
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 2.2e-103 379.8 321 58.9
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 3.8e-103 379.0 317 61.2
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 6.5e-103 378.3 319 59.6
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 1.5e-102 377.1 315 59.4
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 4.2e-102 375.6 318 58.8
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 6.1e-101 371.7 318 61.0
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 1.0e-100 370.9 321 58.3
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 1.8e-100 370.2 303 60.4
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 6.8e-100 368.2 318 56.6
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 3.4e-99 365.9 319 59.2
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 4.4e-99 365.5 308 59.4
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.3e-98 364.0 319 58.9
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 2.2e-98 363.2 321 57.3
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 4.8e-98 362.1 326 55.8
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 6.3e-98 361.7 319 58.9
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 6.3e-98 361.7 293 61.1
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 1.4e-97 360.5 316 58.9
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 3.1e-97 359.4 327 56.3
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 4.1e-97 359.0 299 60.2
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 4.1e-97 359.0 318 56.0
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 5.4e-97 358.6 315 58.1
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 7.0e-97 358.2 314 57.3
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 1.2e-96 357.5 324 56.2
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 1.6e-96 357.1 322 59.3
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 2.7e-96 356.3 309 56.0
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 3.5e-96 355.9 319 58.6
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 3.5e-96 355.9 319 58.6
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 4.5e-96 355.5 320 58.1
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 1.3e-95 354.0 317 57.4
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 1.3e-95 354.0 317 57.4
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 1.7e-95 353.6 322 57.1
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 2.3e-95 353.2 237 70.0
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 2.3e-95 353.2 321 56.7
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 5.0e-95 352.1 281 61.9
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 6.6e-95 351.7 320 58.4
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 6.6e-95 351.7 320 58.4
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 1.1e-94 350.9 316 56.3
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 3.3e-94 349.4 270 63.3
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 7.2e-94 348.2 376 48.9
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 9.5e-94 347.8 311 56.3
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 1.6e-93 347.1 319 57.4
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 3.6e-93 345.9 335 52.5
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 4.7e-93 345.5 321 57.0
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 8.0e-93 344.7 316 56.3
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 1.8e-92 343.6 336 53.6
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 4.0e-92 342.4 318 56.9
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 6.8e-92 341.7 315 54.9
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 3.4e-91 339.3 269 63.2
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 3.4e-91 339.3 317 56.2
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 4.4e-91 339.0 269 62.5
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 5.7e-91 338.6 317 56.5
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 1.7e-90 337.0 316 53.8
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 2.8e-90 336.3 211 75.4
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 6.3e-90 335.1 272 58.5
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 1.1e-89 334.3 350 52.3
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 1.8e-89 333.6 340 50.6
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 1.6e-88 330.5 270 60.0
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 1.6e-88 330.5 340 51.5
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 3.5e-88 329.3 330 51.2
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 4.5e-88 328.9 321 53.6
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 1.3e-87 327.4 335 50.7
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 2.9e-87 326.2 320 52.5
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 5.0e-87 325.5 317 54.3
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 6.6e-87 325.1 289 55.4
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 1.1e-86 324.3 362 47.0
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 4.3e-86 322.4 341 49.6
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 4.7e-85 318.9 317 52.4
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 4.7e-85 318.9 315 53.0
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 1.8e-84 317.0 341 49.6
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 1.8e-84 317.0 341 49.6
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 2.3e-84 316.6 294 52.7
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 4.0e-84 315.8 344 48.0
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 1.2e-83 314.3 285 58.2
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 7.5e-83 311.6 336 49.7
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 9.8e-83 311.2 301 51.8
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 1.7e-82 310.5 316 50.6
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 2.9e-82 309.7 235 62.1
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 1.2e-80 304.3 214 67.8
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 6.0e-80 302.0 350 47.4
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 7.8e-80 301.6 322 52.2
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 2.5e-78 296.6 355 45.1
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 2.1e-77 293.5 321 52.0
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.6e-75 286.6 211 66.8
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 1.9e-70 270.4 323 49.5
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 3.0e-63 246.5 218 56.0
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 5.1e-63 245.7 369 39.3
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 7.6e-59 231.9 238 53.4
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 7.6e-59 231.9 238 53.4
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 1.4e-57 227.6 336 39.6
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 1.9e-57 227.3 243 52.3
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 3.2e-57 226.5 269 45.4
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 7.8e-56 221.9 219 50.2
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 3.9e-55 219.5 246 51.2
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 4.6e-48 196.1 232 43.5
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 6.0e-48 195.7 321 35.8
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 5.1e-47 192.6 205 50.7
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.1e-46 191.4 191 52.9
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 5.3e-44 182.6 391 34.5
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 7.9e-40 168.7 316 37.3
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 7.4e-38 162.2 201 40.8
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 1.3e-37 161.4 243 42.4
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 3.7e-37 159.8 218 44.0
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 4.8e-37 159.5 290 34.1
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 1.1e-36 158.3 111 63.1
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 1.8e-36 157.5 162 52.5
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 1.7e-34 151.0 189 46.0
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 2.1e-32 144.1 205 42.4
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 4.8e-29 132.9 109 59.6
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 6.2e-29 132.5 179 40.8
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 9.0e-28 128.6 278 32.7
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 5.9e-19 99.4 194 30.9
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 6.1e-16 89.4 110 48.2
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 7.2e-09 65.9 45 62.2
SEGI_06155 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 3.0e-07 60.5 42 50.0


User provided reference genes

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