Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1474.9 741 100.0
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1449.1 741 97.7
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1389.0 741 92.2
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1388.6 741 92.0
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1380.9 741 91.8
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1377.5 741 91.4
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1376.3 741 91.2
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1373.6 741 91.2
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1372.8 742 91.6
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1372.8 741 90.7
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1367.4 741 91.0
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1366.7 741 90.6
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1366.3 741 90.6
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1365.9 741 90.6
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1364.7 740 90.5
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1364.0 741 90.7
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1363.6 740 90.7
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1362.8 742 90.4
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1362.8 739 90.7
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1361.7 740 90.5
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1361.7 739 91.2
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1360.5 741 90.4
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1359.7 741 90.1
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1359.0 743 89.9
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1358.6 739 90.5
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1358.2 741 90.0
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1357.8 741 89.9
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1357.0 739 90.4
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1356.3 741 89.7
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1356.3 743 89.9
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1356.3 745 90.1
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1355.5 741 89.7
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1355.5 747 89.6
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1354.0 741 89.5
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1354.0 741 89.7
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1353.6 768 87.5
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1353.2 741 89.7
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1352.8 741 89.5
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1352.0 741 89.6
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1351.3 741 89.7
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1349.0 741 89.3
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1348.2 763 88.3
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1348.2 763 88.3
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1347.8 742 89.8
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1347.4 741 89.3
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1347.4 741 89.9
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1346.3 741 89.3
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1345.1 741 89.1
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1344.7 742 89.5
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1341.3 741 89.9
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1334.7 741 88.7
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1333.5 741 88.9
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1333.5 738 89.0
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1333.5 741 88.4
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1332.4 741 88.9
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1332.0 735 89.4
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1331.2 743 88.6
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1331.2 743 88.3
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1330.5 743 88.6
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1329.3 741 88.4
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1328.5 743 88.4
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1328.2 740 88.0
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1327.8 741 88.0
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1327.8 740 87.3
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1327.0 741 89.1
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1326.2 741 88.0
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1324.3 741 87.2
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1324.3 741 87.6
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1323.9 740 87.0
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1323.9 741 87.0
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1323.5 741 88.3
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1323.1 740 87.0
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1322.8 740 86.9
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1322.4 740 87.3
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1321.6 740 87.7
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1321.2 741 87.4
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1319.7 740 86.8
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1318.5 740 86.6
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1318.1 741 88.1
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1317.8 740 86.5
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1317.4 740 87.3
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 0.0e+00 1317.0 707 92.4
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1316.6 743 88.3
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1313.1 741 86.8
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1312.4 743 87.8
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1312.4 741 86.5
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1312.0 742 87.7
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1310.4 738 87.8
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1308.5 744 87.9
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1308.1 744 87.4
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1307.0 741 86.2
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1306.6 742 86.9
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1305.8 742 86.1
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1305.8 744 87.5
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1305.4 744 87.1
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1303.5 740 86.5
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1303.5 743 86.9
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1302.3 741 86.5
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1301.6 711 90.7
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1296.6 744 86.3
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1296.2 803 80.8
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 0.0e+00 1296.2 822 80.4
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1294.3 741 85.6
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1293.9 737 86.3
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1286.6 747 84.5
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1280.8 757 83.6
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1276.5 773 82.5
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1272.7 710 89.3
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1263.1 741 85.3
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1260.4 728 85.7
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1257.3 707 87.4
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1254.6 745 82.8
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1248.8 736 85.9
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1245.7 747 83.0
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1239.2 737 82.6
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 0.0e+00 1235.7 668 91.0
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1228.0 674 90.1
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1225.3 747 81.1
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 0.0e+00 1204.9 746 81.9
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1150.2 616 90.9
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 0.0e+00 1140.9 631 88.7
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 0.0e+00 1137.9 739 76.3
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1129.4 744 74.5
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 0.0e+00 1124.8 686 79.6
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1107.8 740 73.8
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1085.1 740 72.3
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 1.7e-294 1015.8 634 78.5
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 5.3e-243 844.7 667 62.4
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 2.6e-234 815.8 699 60.1
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 7.4e-229 797.7 540 77.6
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 2.4e-219 766.1 644 62.3
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 5.1e-214 748.4 523 74.8
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 5.7e-213 745.0 741 56.4
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 8.2e-212 741.1 453 82.8
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.1e-211 740.7 739 56.2
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 1.0e-209 734.2 464 79.3
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 4.3e-136 489.6 433 61.7
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 2.1e-135 487.3 263 90.5
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 7.7e-101 372.5 218 85.8
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 1.4e-81 308.5 578 36.9
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 4.5e-77 293.5 152 92.1
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 9.8e-72 275.8 143 93.0
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 5.0e-60 236.9 170 72.9
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 4.4e-40 170.6 322 35.4
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 2.9e-39 167.9 98 81.6
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.4e-38 165.6 84 91.7
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 5.6e-35 153.7 80 90.0
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 5.1e-28 130.6 72 86.1
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 5.1e-28 130.6 80 77.5
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 1.8e-25 122.1 71 81.7
COL.COLO4_18339 Corchorus olitorius HOM05D004298 ORTHO05D160745 1.7e-23 115.5 69 78.3
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 6.4e-23 113.6 69 72.5
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 1.4e-22 112.5 70 78.6
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 1.1e-19 102.8 108 53.7
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 1.5e-19 102.4 73 74.0
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 3.3e-19 101.3 85 57.6
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.3e-18 99.4 75 68.0
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 8.1e-18 96.7 222 33.3
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.1e-17 96.3 75 65.3
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 1.2e-16 92.8 85 52.9
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 1.9e-14 85.5 47 89.4
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 2.7e-13 81.6 49 87.8
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 3.9e-12 77.8 47 76.6
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 8.7e-12 76.6 61 60.7
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.5e-11 75.9 46 76.1
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 1.5e-11 75.9 45 77.8
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 1.3e-10 72.8 43 74.4
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 1.4e-09 69.3 40 80.0
TAR625G1187 Trochodendron aralioides HOM05D006212 ORTHO05D008245 1.5e-08 65.9 33 90.9
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 2.6e-08 65.1 52 48.1
CAN.G970.17 Capsicum annuum HOM05D004298 ORTHO05D115446 1.1e-06 59.7 58 58.6
ATR0561G078 Amborella trichopoda HOM05D004298 ORTHO05D065354 5.5e-06 57.4 71 42.3


User provided reference genes

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