Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 2417.5 1317 100.0
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 2040.0 1317 80.8
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 2014.2 1317 80.0
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 1994.9 1317 79.9
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 1993.4 1317 80.6
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 1971.4 1303 79.2
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1936.8 1317 77.4
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1902.1 1317 76.5
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1899.4 1436 71.4
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1897.5 1317 75.6
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 1865.5 1317 75.6
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 1857.8 1365 74.4
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1845.5 1321 74.7
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1841.2 1317 74.5
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 1840.5 1317 74.7
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1830.5 1317 73.7
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1822.0 1317 74.0
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1821.6 1317 73.0
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1821.6 1317 73.5
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 1811.6 1317 72.4
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 1801.6 1317 71.7
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1800.0 1317 71.9
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1793.1 1549 64.7
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1788.5 1317 72.1
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1780.0 1317 71.1
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1779.6 1318 72.2
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1770.0 1317 70.7
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 1762.3 1317 71.3
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1756.5 1317 72.2
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1755.3 1317 71.1
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1740.3 1317 71.3
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1736.1 1317 71.5
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 1733.8 1317 69.9
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 1731.8 1317 70.0
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1724.5 1317 68.6
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1721.4 1317 70.1
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1718.7 1317 68.9
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1717.2 1317 68.6
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1711.0 1340 69.9
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1707.2 1343 68.7
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1705.6 1332 70.1
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 1705.3 1332 70.1
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 1703.7 1359 68.9
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1701.4 1317 69.9
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1700.6 1210 75.1
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1699.5 1325 68.8
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1691.4 1317 68.6
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1679.8 1317 67.0
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1679.5 1318 68.2
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1677.9 1317 69.2
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1675.2 1210 73.3
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1674.1 1303 69.1
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1672.9 1317 68.1
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1669.4 1317 68.2
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1664.0 1376 66.1
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1658.3 1317 67.7
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1646.3 1261 70.4
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1638.2 1317 69.4
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1637.9 1317 68.7
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1612.8 1318 67.8
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 1612.4 1401 64.1
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1606.7 1318 67.5
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1606.3 1318 67.5
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1596.6 1337 65.1
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1592.8 1317 65.1
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1590.1 1254 68.1
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1572.4 1303 65.0
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1568.1 1317 64.5
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1565.8 1303 64.9
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1562.0 1318 64.7
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1560.0 1317 63.5
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1552.7 1370 65.0
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1540.4 1317 63.4
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1532.7 1318 64.6
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1502.3 1303 63.0
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1226.1 1317 51.5
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 0.0e+00 1139.8 1325 48.7
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 0.0e+00 1108.2 1062 56.6
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 0.0e+00 1093.2 1316 47.3
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 2.1e-306 1056.2 1025 58.7
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 2.9e-300 1035.8 900 63.4
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 1.4e-291 1006.9 743 71.1
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 8.1e-287 991.1 1059 53.2
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 2.0e-285 986.5 1316 45.0
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 9.9e-285 984.2 759 68.5
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 6.0e-282 974.9 767 69.9
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 3.1e-278 962.6 888 58.9
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 1.7e-268 930.2 669 75.2
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 1.5e-264 917.1 1254 44.5
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 1.9e-264 916.8 1108 52.0
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 9.6e-264 914.4 631 74.8
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 1.6e-263 913.7 631 74.8
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 1.4e-259 900.6 761 62.8
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 7.4e-240 835.1 725 62.6
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 1.3e-239 834.3 787 59.6
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 4.2e-235 819.3 631 71.3
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 9.4e-235 818.1 724 61.3
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 8.8e-225 785.0 735 60.7
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 2.9e-220 770.0 1270 38.8
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 3.2e-219 766.5 558 72.8
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 4.0e-217 759.6 594 68.4
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 4.0e-217 759.6 594 68.4
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 8.3e-191 672.2 593 62.9
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 9.0e-169 599.0 1372 33.5
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 4.8e-154 550.1 350 81.7
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 1.5e-152 545.0 524 59.5
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 7.6e-144 516.2 375 72.3
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 6.5e-143 513.1 1342 31.1
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 3.3e-139 500.7 444 62.8
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.6e-138 498.4 397 66.5
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 1.3e-135 488.8 286 87.8
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 1.6e-133 481.9 457 59.3
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 4.4e-131 473.8 1400 31.3
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 2.1e-125 454.9 1325 27.7
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 1.3e-122 445.7 388 62.4
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.4e-121 442.2 222 98.2
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 8.5e-119 433.0 244 90.2
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 2.0e-115 421.8 264 82.6
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 5.9e-112 410.2 224 89.7
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 9.4e-110 402.9 853 36.8
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.0e-104 385.2 408 57.1
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 3.5e-104 384.4 326 64.7
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 9.5e-94 349.7 187 93.0
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 1.5e-91 342.4 223 80.3
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 2.0e-83 315.5 235 68.9
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.3e-63 249.6 126 94.4
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 8.1e-53 213.8 140 80.7
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 1.4e-49 203.0 139 79.1
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 2.1e-45 189.1 170 58.8
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 1.7e-42 179.5 192 52.6
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 1.8e-36 159.5 87 92.0
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 1.5e-35 156.4 146 61.0
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 1.0e-34 153.7 106 77.4
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 6.5e-34 151.0 114 68.4
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 1.1e-33 150.2 72 95.8
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 1.3e-29 136.7 234 39.7
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 8.2e-29 134.0 138 49.3
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 5.1e-23 114.8 100 63.0
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 7.4e-22 110.9 64 85.9
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 6.3e-21 107.8 64 81.2
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 8.2e-21 107.5 106 59.4
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 1.5e-19 103.2 91 61.5
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 8.8e-15 87.4 72 65.3
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 9.7e-14 84.0 90 54.4
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 2.2e-13 82.8 77 58.4
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 2.8e-13 82.4 77 61.0
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 5.0e-10 71.6 63 65.1
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 7.2e-09 67.8 161 29.8
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 1.2e-08 67.0 61 65.6
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 1.6e-08 66.6 56 69.6
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 8.8e-07 60.8 33 90.9
SHI26066 Sapria himalayana HOM05D005045 ORTHO05D366980 9.7e-06 57.4 99 42.4


User provided reference genes

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