Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 0.0e+00 1081.2 550 100.0
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 3.3e-218 761.9 529 75.6
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 4.2e-213 745.0 531 73.3
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 1.2e-212 743.4 529 73.2
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 1.0e-211 740.3 471 80.9
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 2.0e-210 736.1 528 73.3
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 6.3e-209 731.1 500 75.2
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 1.4e-208 729.9 519 72.3
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 3.1e-208 728.8 531 70.1
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 5.3e-208 728.0 511 71.6
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 9.1e-208 727.2 455 80.0
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 2.7e-207 725.7 528 71.0
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.2e-206 722.6 527 70.2
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.9e-206 722.2 490 74.3
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 4.2e-205 718.4 501 73.7
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 2.1e-204 716.1 480 73.5
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 3.6e-204 715.3 490 73.7
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 3.6e-204 715.3 527 70.6
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 8.0e-204 714.1 485 74.6
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 1.4e-203 713.4 529 70.3
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 2.3e-203 712.6 516 70.7
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 3.0e-203 712.2 483 76.2
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 3.0e-203 712.2 483 76.2
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 4.0e-203 711.8 498 72.5
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 9.8e-202 707.2 535 68.6
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 6.3e-201 704.5 527 70.0
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 6.3e-201 704.5 532 69.5
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.1e-200 703.7 545 67.9
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 1.8e-200 703.0 502 73.1
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 3.1e-200 702.2 524 69.5
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 5.4e-200 701.4 531 68.9
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 7.0e-200 701.0 503 70.8
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 1.6e-199 699.9 451 79.2
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 2.3e-198 696.0 460 75.9
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 3.8e-198 695.3 511 70.3
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 5.0e-198 694.9 518 71.4
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.1e-197 693.7 529 69.6
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 3.3e-197 692.2 450 77.3
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 3.3e-197 692.2 452 75.4
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 1.2e-196 690.3 534 68.0
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 3.6e-196 688.7 531 68.7
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 1.4e-195 686.8 521 70.4
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 2.3e-195 686.0 521 68.5
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 5.2e-195 684.9 472 72.9
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 6.8e-195 684.5 485 72.4
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 6.8e-195 684.5 480 73.1
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 1.7e-193 679.9 520 68.3
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 2.2e-193 679.5 456 74.8
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 2.8e-193 679.1 452 75.9
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 2.4e-192 676.0 523 66.9
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 3.1e-192 675.6 492 70.5
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 7.0e-192 674.5 462 72.7
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 7.0e-192 674.5 497 68.6
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 9.2e-192 674.1 527 66.0
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 2.0e-191 672.9 506 67.6
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 2.0e-191 672.9 506 67.6
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 2.0e-191 672.9 519 67.4
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 2.7e-191 672.5 536 65.7
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 7.8e-191 671.0 506 67.4
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 1.0e-190 670.6 507 67.7
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 1.7e-190 669.8 518 67.0
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 6.6e-190 667.9 502 69.3
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 1.1e-189 667.2 455 74.1
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 4.3e-189 665.2 520 67.5
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 5.6e-189 664.8 511 67.5
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 7.3e-189 664.5 459 70.8
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 7.3e-189 664.5 500 69.2
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 9.5e-189 664.1 507 67.5
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 9.5e-189 664.1 528 65.9
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.8e-188 662.5 498 68.7
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 3.6e-188 662.1 456 71.7
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 4.7e-188 661.8 518 67.2
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 4.7e-188 661.8 514 66.9
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 4.7e-188 661.8 459 71.0
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.7e-188 661.8 535 65.8
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 8.0e-188 661.0 541 66.0
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 1.8e-187 659.8 454 71.1
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 5.2e-187 658.3 533 65.5
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 8.9e-187 657.5 492 70.3
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 3.4e-186 655.6 526 64.1
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 7.5e-186 654.4 465 71.8
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.1e-184 650.6 513 65.3
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 4.3e-181 638.6 528 64.0
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 4.3e-181 638.6 521 65.3
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 2.1e-180 636.3 525 64.0
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 1.4e-179 633.6 517 66.0
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 6.4e-177 624.8 426 73.0
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 1.4e-176 623.6 533 64.0
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 2.5e-173 612.8 467 69.6
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 2.5e-173 612.8 455 68.6
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 2.8e-172 609.4 577 59.8
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 5.2e-171 605.1 461 66.8
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.7e-169 600.1 375 79.5
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 2.9e-169 599.4 410 74.6
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 2.1e-167 593.2 558 59.0
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 7.8e-167 591.3 459 66.4
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 6.6e-166 588.2 510 61.0
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 3.6e-164 582.4 538 59.7
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 5.8e-162 575.1 408 70.6
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 7.6e-162 574.7 460 62.0
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.4e-160 568.5 536 57.8
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 1.6e-159 567.0 479 59.7
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 8.7e-158 561.2 514 58.9
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 5.1e-142 508.8 388 67.0
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 2.1e-140 503.4 385 71.4
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 4.8e-140 502.3 512 55.7
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 4.5e-138 495.7 350 74.0
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.6e-135 485.7 480 56.7
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.4e-131 473.4 436 55.3
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.0e-126 458.0 398 58.8
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 1.3e-126 457.6 443 51.7
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 3.1e-123 446.4 348 68.7
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 6.9e-123 445.3 466 54.7
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.6e-111 407.5 266 76.7
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 3.6e-111 406.4 536 45.7
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 1.8e-110 404.1 450 50.4
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 7.7e-106 388.7 456 46.5
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 2.2e-97 360.5 460 48.0
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 1.8e-91 340.9 435 44.1
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.1e-75 288.5 240 61.7
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 9.8e-69 265.4 217 65.4
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.2e-67 260.4 229 55.9
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 2.0e-66 257.7 277 51.3
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.5e-64 251.5 174 73.0
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.4e-59 235.0 266 51.5
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 1.9e-59 234.6 148 73.0
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 8.9e-54 215.7 131 77.1
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 2.3e-49 201.1 146 63.0
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 5.6e-48 196.4 209 48.3
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.6e-47 194.9 343 37.0
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 6.2e-47 193.0 113 80.5
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 3.8e-44 183.7 121 71.1
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 3.3e-40 170.6 122 68.9
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 3.3e-40 170.6 231 44.2
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.9e-36 157.5 126 57.1
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 7.3e-32 142.9 106 65.1
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 3.4e-29 134.0 95 72.6
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 2.3e-25 121.3 123 52.0
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.5e-24 117.9 75 74.7
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 9.6e-24 115.9 233 39.5
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 1.8e-22 111.7 83 63.9
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 2.4e-22 111.3 105 52.4
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 9.0e-22 109.4 218 35.8
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 9.0e-22 109.4 77 64.9
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 2.5e-19 101.3 75 66.7
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 3.3e-16 90.9 71 64.8
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 1.6e-15 88.6 211 30.3
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 4.8e-15 87.0 71 62.0
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 2.6e-13 81.3 212 31.6
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 3.2e-11 74.3 59 59.3
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 6.7e-09 66.6 109 35.8
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 6.7e-09 66.6 67 47.8
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 3.3e-08 64.3 40 82.5
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.2e-07 61.6 67 44.8
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 2.8e-07 61.2 36 80.6


User provided reference genes

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