Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 4.1e-209 731.1 356 100.0
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 3.6e-157 558.5 365 77.8
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 6.9e-140 501.1 361 68.4
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 5.8e-139 498.0 362 66.9
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 2.2e-138 496.1 361 67.0
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 2.7e-136 489.2 354 68.4
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 1.0e-135 487.3 364 67.0
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 1.0e-135 487.3 361 68.4
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 5.1e-135 485.0 363 66.1
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 1.5e-134 483.4 357 66.9
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 2.5e-134 482.6 357 66.9
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 1.6e-133 479.9 359 68.8
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 1.4e-132 476.9 370 65.9
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 1.8e-132 476.5 365 64.7
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 6.9e-132 474.6 358 64.8
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 1.2e-131 473.8 359 64.6
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 2.6e-131 472.6 356 65.2
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 5.8e-131 471.5 350 64.9
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 1.0e-130 470.7 359 64.9
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 1.4e-129 466.8 357 64.7
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 2.5e-129 466.1 365 61.6
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 2.5e-129 466.1 363 62.3
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 5.5e-129 464.9 359 62.4
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 9.3e-129 464.2 352 64.2
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 1.6e-128 463.4 358 64.8
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 2.1e-128 463.0 363 63.6
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 2.7e-128 462.6 355 64.8
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 3.5e-128 462.2 359 63.2
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 4.6e-128 461.8 355 64.5
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 7.9e-128 461.1 356 64.6
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 7.9e-128 461.1 351 63.5
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.8e-127 459.9 361 61.5
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 3.0e-127 459.1 362 61.0
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 3.9e-127 458.8 363 63.6
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 3.9e-127 458.8 350 63.7
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 6.7e-127 458.0 352 62.8
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 8.7e-127 457.6 354 63.6
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 1.9e-126 456.4 356 62.6
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 9.6e-126 454.1 360 62.8
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.3e-125 453.8 365 63.6
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 1.6e-125 453.4 365 60.8
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 4.8e-125 451.8 351 61.3
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 6.2e-125 451.4 360 60.6
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 1.4e-124 450.3 355 61.7
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 1.8e-124 449.9 352 61.1
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 5.3e-124 448.4 360 60.8
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 5.3e-124 448.4 362 59.4
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 1.2e-123 447.2 368 60.3
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 1.5e-123 446.8 351 60.4
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.5e-123 446.8 361 62.0
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 1.5e-123 446.8 357 60.8
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 2.6e-123 446.0 350 61.4
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 3.4e-123 445.7 351 60.1
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 1.7e-122 443.4 349 61.6
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 2.2e-122 443.0 360 61.1
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 5.0e-122 441.8 351 60.4
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 8.4e-122 441.0 355 60.8
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 8.4e-122 441.0 352 60.8
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 8.4e-122 441.0 352 60.8
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 1.1e-121 440.7 351 60.1
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 1.1e-121 440.7 351 60.7
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.1e-121 440.7 352 61.9
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 1.9e-121 439.9 352 60.8
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 1.9e-121 439.9 353 61.2
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 7.2e-121 438.0 359 60.2
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 7.2e-121 438.0 430 53.7
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 7.2e-121 438.0 352 60.8
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 1.6e-120 436.8 357 61.1
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 1.6e-120 436.8 360 60.6
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 2.7e-120 436.0 353 60.6
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 2.7e-120 436.0 353 60.6
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 3.5e-120 435.6 352 59.7
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 6.1e-120 434.9 323 64.7
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 6.1e-120 434.9 351 61.5
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 1.3e-119 433.7 352 60.8
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 3.9e-119 432.2 410 53.2
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 1.5e-118 430.3 348 60.1
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 9.7e-118 427.6 358 60.6
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 1.3e-117 427.2 352 60.2
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 4.8e-117 425.2 355 59.4
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 6.9e-116 421.4 359 59.9
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 2.0e-115 419.9 353 59.8
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 2.6e-115 419.5 353 59.8
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 5.9e-115 418.3 360 58.3
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 7.7e-115 417.9 359 60.2
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 1.3e-114 417.2 356 57.6
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 5.0e-114 415.2 341 59.2
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 7.2e-113 411.4 489 48.1
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 1.6e-112 410.2 330 63.0
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 3.0e-111 406.0 397 53.7
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 3.9e-111 405.6 429 50.6
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 1.5e-107 393.7 339 56.6
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 1.1e-105 387.5 360 53.3
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 1.4e-105 387.1 309 61.8
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 3.2e-105 386.0 376 54.5
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 3.2e-105 386.0 357 56.6
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 4.2e-105 385.6 352 54.8
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 1.4e-103 380.6 358 51.7
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 4.4e-102 375.6 295 62.0
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 3.7e-101 372.5 248 70.6
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 3.8e-98 362.5 385 49.1
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 1.6e-96 357.1 349 53.6
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 6.7e-95 351.7 351 51.9
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 8.8e-95 351.3 350 53.4
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 1.1e-92 344.4 326 54.3
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 4.0e-87 325.9 296 55.7
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.5e-86 323.9 242 65.3
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 7.5e-86 321.6 419 43.0
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 4.8e-85 318.9 217 69.1
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.7e-82 310.5 208 71.2
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 2.2e-82 310.1 287 53.7
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 1.3e-77 294.3 411 38.9
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 2.0e-75 287.0 154 82.5
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 2.3e-74 283.5 377 41.1
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 2.1e-72 276.9 358 41.3
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 2.0e-67 260.4 356 42.7
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 5.8e-62 242.3 132 84.1
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 5.8e-62 242.3 126 84.9
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 1.0e-58 231.5 233 53.2
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 1.3e-50 204.5 258 42.6
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 1.3e-50 204.5 258 42.6
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 1.1e-41 174.9 160 56.2
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 3.3e-41 173.3 201 46.3
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 5.6e-41 172.6 201 46.3
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 8.1e-40 168.7 203 46.3
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 4.4e-38 162.9 126 55.6
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 3.9e-34 149.8 83 79.5
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 2.4e-28 130.6 75 82.7
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 1.5e-17 94.7 197 32.0
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 2.5e-17 94.0 130 43.8
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 9.6e-17 92.0 128 46.1
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 3.7e-16 90.1 121 44.6
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 5.7e-09 66.2 97 45.4


User provided reference genes

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