Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 5.9e-118 427.6 219 100.0
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.1e-90 337.0 220 79.5
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.8e-90 336.3 220 78.6
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 3.2e-87 325.5 219 72.6
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 9.3e-87 323.9 219 74.4
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 4.6e-86 321.6 219 74.9
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 8.7e-85 317.4 219 74.0
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 3.3e-84 315.5 220 72.7
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 1.1e-82 310.5 249 68.3
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 9.0e-82 307.4 220 70.5
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 1.5e-81 306.6 220 72.3
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 7.6e-81 304.3 219 68.0
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 9.9e-81 303.9 219 69.4
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 9.9e-81 303.9 220 71.4
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 9.9e-81 303.9 220 71.4
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.8e-80 302.0 220 71.4
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.4e-80 300.8 220 70.5
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.4e-80 300.8 220 70.5
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.4e-80 300.8 220 70.5
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.2e-79 298.9 220 70.0
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.2e-79 298.9 220 70.0
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.2e-79 298.9 220 70.0
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.1e-79 297.7 220 70.0
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 9.3e-79 297.4 220 70.0
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 4.6e-78 295.0 219 68.9
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 1.3e-77 293.5 216 69.0
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 1.9e-76 289.7 219 67.1
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 1.9e-76 289.7 204 72.1
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.3e-75 287.0 220 65.0
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 1.3e-75 287.0 219 66.2
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 2.8e-75 285.8 219 67.6
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 2.4e-74 282.7 219 66.7
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 4.0e-74 282.0 223 65.5
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 1.5e-73 280.0 221 64.3
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 2.0e-73 279.6 219 65.3
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 5.8e-73 278.1 219 66.2
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.3e-72 276.9 214 65.9
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 3.8e-72 275.4 221 65.2
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 8.4e-72 274.2 212 66.0
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 1.1e-71 273.9 223 66.8
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 1.4e-71 273.5 220 62.3
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 1.9e-71 273.1 220 62.3
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 1.9e-71 273.1 220 63.2
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 2.4e-71 272.7 223 64.1
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 9.3e-71 270.8 219 61.6
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 4.6e-70 268.5 221 64.3
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 6.0e-70 268.1 223 61.4
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 6.0e-70 268.1 223 62.3
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 7.9e-70 267.7 221 62.9
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 1.0e-69 267.3 223 64.1
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 1.3e-69 266.9 220 61.4
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 1.3e-69 266.9 219 62.1
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 1.8e-69 266.5 223 61.4
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 1.8e-69 266.5 222 64.9
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 2.3e-69 266.2 223 65.0
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 6.7e-69 264.6 220 60.0
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 6.7e-69 264.6 223 59.6
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 6.7e-69 264.6 219 60.7
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 1.1e-68 263.8 235 61.3
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 1.5e-68 263.5 219 61.2
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 1.5e-68 263.5 219 63.0
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 1.9e-68 263.1 222 60.8
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 2.5e-68 262.7 219 60.7
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 3.3e-68 262.3 222 60.4
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 3.3e-68 262.3 219 61.2
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 3.3e-68 262.3 223 61.0
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 7.4e-68 261.2 219 63.5
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 9.6e-68 260.8 222 60.4
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 1.3e-67 260.4 219 59.8
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 1.3e-67 260.4 223 61.4
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 1.3e-67 260.4 221 65.6
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 2.1e-67 259.6 223 61.0
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 2.8e-67 259.2 219 59.8
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 3.7e-67 258.8 219 59.8
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 3.7e-67 258.8 219 59.8
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 3.7e-67 258.8 223 61.0
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 4.8e-67 258.5 219 59.4
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 6.2e-67 258.1 219 63.5
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 8.1e-67 257.7 234 59.8
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.4e-66 256.9 222 60.4
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 1.8e-66 256.5 219 59.4
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 5.3e-66 255.0 219 59.8
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 5.3e-66 255.0 217 63.1
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 6.9e-66 254.6 219 58.9
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 4.5e-65 251.9 214 59.3
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 5.8e-65 251.5 227 57.7
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 5.8e-65 251.5 219 62.6
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 1.7e-64 250.0 225 60.4
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 3.8e-64 248.8 233 55.8
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 1.1e-63 247.3 221 62.4
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.5e-63 246.1 198 65.7
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 5.5e-63 245.0 219 59.8
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 1.3e-61 240.4 219 58.4
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 1.8e-61 240.0 219 56.2
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 2.3e-61 239.6 231 56.7
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 3.9e-61 238.8 265 51.7
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 1.9e-60 236.5 219 59.4
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 1.9e-60 236.5 222 57.2
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 2.5e-60 236.1 219 60.3
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 1.3e-59 233.8 207 61.8
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 1.3e-59 233.8 256 54.7
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 3.7e-59 232.3 230 56.5
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 4.8e-59 231.9 228 56.1
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 1.4e-58 230.3 185 64.3
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 1.2e-57 227.3 219 58.0
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 2.6e-57 226.1 218 56.9
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 5.9e-57 224.9 216 57.4
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 7.6e-57 224.6 277 50.5
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 1.7e-56 223.4 196 59.7
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 3.8e-56 222.2 255 51.4
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 6.5e-56 221.5 207 58.0
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 2.5e-55 219.5 217 57.1
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.2e-55 218.8 166 68.1
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 9.3e-55 217.6 185 63.8
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 6.7e-53 211.5 346 38.7
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 6.7e-53 211.5 223 54.7
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 1.6e-51 206.8 201 56.7
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 6.3e-51 204.9 204 52.9
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.4e-50 203.8 153 69.9
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 1.8e-50 203.4 204 58.3
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 2.2e-48 196.4 261 46.0
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.6e-46 190.3 148 67.6
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 1.4e-45 187.2 194 54.1
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 3.9e-45 185.7 148 66.2
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 6.7e-45 184.9 180 53.9
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 1.7e-43 180.3 190 55.8
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 1.1e-42 177.6 139 69.8
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 3.4e-41 172.6 133 69.2
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 1.7e-40 170.2 156 60.3
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 9.4e-39 164.5 196 50.0
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 2.3e-37 159.8 154 60.4
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 2.0e-36 156.8 145 57.9
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 4.8e-35 152.1 117 67.5
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 1.4e-34 150.6 166 53.6
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 1.6e-33 147.1 95 80.0
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.7e-30 136.3 94 70.2
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 1.3e-24 117.5 182 40.1
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 1.9e-23 113.6 127 50.4
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 1.9e-23 113.6 93 59.1
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 2.1e-22 110.2 183 38.3
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 2.1e-22 110.2 98 57.1
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 8.8e-21 104.8 190 35.3
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 2.8e-19 99.8 151 44.4
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 8.3e-19 98.2 179 34.1
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 5.0e-16 89.0 68 58.8
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 6.5e-16 88.6 95 49.5
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 8.5e-16 88.2 98 46.9
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 2.8e-11 73.2 50 70.0
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 9.2e-10 68.2 183 31.7
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 3.5e-09 66.2 132 37.1
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 2.9e-08 63.2 59 52.5
Zm00001eb258190 Zea mays HOM05D006252 ORTHO05D007909 8.0e-06 55.1 170 30.0


User provided reference genes

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