Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 1.1e-214 749.6 363 100.0
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 3.7e-157 558.5 365 77.8
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 3.5e-155 552.0 359 72.4
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 2.5e-153 545.8 362 72.4
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 9.4e-153 543.9 358 73.2
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 2.3e-151 539.3 361 73.1
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 2.0e-150 536.2 362 71.3
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 4.4e-150 535.0 360 71.9
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 9.8e-150 533.9 363 71.3
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 9.1e-148 527.3 367 71.7
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 5.9e-147 524.6 360 71.1
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 1.7e-146 523.1 359 69.9
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 2.5e-145 519.2 365 69.6
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 5.7e-142 508.1 359 67.1
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 7.5e-142 507.7 361 69.5
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 9.8e-142 507.3 362 68.0
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 6.3e-141 504.6 362 65.2
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.1e-140 503.8 361 68.1
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 1.4e-140 503.4 364 67.6
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 7.0e-140 501.1 366 65.6
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.6e-139 500.0 363 66.9
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 1.6e-139 500.0 359 66.9
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 2.0e-139 499.6 364 67.0
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 2.0e-139 499.6 365 67.9
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 4.5e-139 498.4 358 67.9
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 7.8e-139 497.7 362 65.5
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.7e-138 496.5 361 68.4
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 2.9e-138 495.7 358 67.3
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 7.3e-137 491.1 362 66.6
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 7.3e-137 491.1 362 64.6
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 1.2e-136 490.3 358 63.4
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 8.0e-136 487.6 358 64.5
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 8.0e-136 487.6 356 66.3
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.8e-135 486.5 364 64.8
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 2.3e-135 486.1 363 65.3
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 1.5e-134 483.4 362 63.5
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 3.4e-134 482.3 362 64.1
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 4.4e-134 481.9 362 64.1
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 5.8e-134 481.5 362 63.8
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 5.8e-134 481.5 364 64.6
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 1.3e-133 480.3 355 64.5
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 1.3e-133 480.3 360 62.5
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 1.3e-133 480.3 328 69.8
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 1.3e-133 480.3 356 66.6
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 3.7e-133 478.8 354 65.5
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 6.4e-133 478.0 433 55.9
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 8.3e-133 477.6 364 63.7
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 3.2e-132 475.7 358 64.5
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 4.1e-132 475.3 362 63.3
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 9.2e-132 474.2 372 62.6
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 2.0e-131 473.0 355 64.8
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 2.7e-131 472.6 361 62.9
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 3.0e-130 469.2 362 63.5
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 6.6e-130 468.0 359 61.8
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 1.5e-129 466.8 407 55.8
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 5.6e-129 464.9 359 62.4
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 7.3e-129 464.5 359 63.5
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 7.3e-129 464.5 359 63.5
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 9.5e-129 464.2 360 61.7
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 1.2e-128 463.8 360 62.5
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 2.1e-128 463.0 360 61.1
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 2.1e-128 463.0 360 61.4
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 2.1e-128 463.0 360 61.4
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 6.2e-128 461.5 360 62.5
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 1.4e-127 460.3 353 62.9
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 1.4e-127 460.3 361 61.8
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 1.4e-127 460.3 366 62.3
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 1.4e-127 460.3 483 52.2
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 3.1e-127 459.1 359 61.3
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 5.2e-127 458.4 359 61.6
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 5.2e-127 458.4 358 61.7
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 8.9e-127 457.6 359 61.8
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 2.0e-126 456.4 355 63.4
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 2.0e-126 456.4 360 61.9
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 3.4e-126 455.7 359 61.8
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 5.8e-126 454.9 359 62.7
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 9.8e-126 454.1 366 61.7
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 2.2e-125 453.0 360 61.7
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 3.7e-125 452.2 339 63.1
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 8.3e-125 451.1 428 54.7
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 2.4e-124 449.5 362 63.0
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 5.4e-124 448.4 355 62.3
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 7.0e-124 448.0 359 61.3
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 9.2e-124 447.6 360 61.4
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 2.1e-123 446.4 364 59.3
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 6.0e-123 444.9 361 61.5
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 7.8e-123 444.5 361 61.5
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 5.6e-121 438.3 352 61.4
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 3.6e-120 435.6 358 58.9
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 8.1e-120 434.5 352 59.4
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 8.9e-119 431.0 324 67.0
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 1.5e-118 430.3 305 66.6
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 2.2e-117 426.4 405 54.8
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 2.9e-117 426.0 359 59.1
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 2.0e-110 403.3 360 57.8
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 4.4e-110 402.1 345 56.5
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 2.7e-107 392.9 247 74.1
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 4.6e-107 392.1 356 53.7
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 3.6e-104 382.5 283 63.6
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 8.1e-104 381.3 355 56.6
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 1.3e-101 374.0 354 50.0
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 2.2e-101 373.2 384 50.3
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 2.4e-100 369.8 360 53.6
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 5.4e-100 368.6 333 57.1
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 7.8e-99 364.8 357 53.8
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 2.0e-94 350.1 293 60.8
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 6.4e-93 345.1 247 68.4
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 2.5e-89 333.2 420 42.9
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 5.8e-86 322.0 207 72.0
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.6e-83 313.9 208 71.6
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 8.7e-82 308.1 284 55.6
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 8.2e-80 301.6 411 41.6
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 6.9e-79 298.5 358 46.9
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 1.2e-78 297.7 379 42.5
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 2.1e-75 287.0 153 82.4
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 5.1e-74 282.3 363 40.5
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 6.3e-72 275.4 236 60.6
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 4.5e-62 242.7 132 84.1
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 3.2e-60 236.5 126 82.5
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 3.6e-51 206.5 266 42.5
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 3.6e-51 206.5 266 42.5
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 2.2e-45 187.2 160 60.0
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 8.5e-45 185.3 213 49.8
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 2.8e-40 170.2 124 56.5
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 3.1e-39 166.8 206 43.2
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 3.1e-39 166.8 205 43.4
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 1.6e-35 154.5 83 83.1
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 1.9e-28 131.0 75 81.3
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 4.0e-26 123.2 121 55.4
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 9.8e-25 118.6 143 45.5
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 5.0e-21 106.3 194 35.1
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 9.5e-20 102.1 122 45.9
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 3.7e-16 90.1 94 54.3


User provided reference genes

Program Settings