Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 3.2e-160 568.5 325 100.0
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 3.3e-133 478.8 325 84.3
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 3.7e-132 475.3 327 83.5
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 4.8e-132 474.9 325 83.7
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 2.6e-130 469.2 325 84.6
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 5.0e-129 464.9 325 84.0
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 5.0e-129 464.9 325 84.0
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 6.5e-129 464.5 325 84.3
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 1.5e-128 463.4 325 83.1
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.5e-128 463.4 330 82.1
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 1.9e-128 463.0 326 82.2
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 4.2e-128 461.8 326 83.1
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 4.2e-128 461.8 328 82.3
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 7.2e-128 461.1 325 83.1
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 2.7e-127 459.1 325 82.2
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.0e-126 457.2 335 80.3
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.4e-126 456.8 327 81.3
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 1.8e-126 456.4 328 79.9
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 4.0e-126 455.3 327 81.0
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 8.8e-126 454.1 326 80.4
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 1.5e-125 453.4 328 81.7
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 1.5e-125 453.4 332 79.2
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 2.0e-125 453.0 330 81.8
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 4.4e-125 451.8 321 81.9
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 7.5e-125 451.1 333 81.4
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 7.5e-125 451.1 328 81.1
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 7.5e-125 451.1 326 80.7
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 1.7e-124 449.9 330 81.2
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 3.7e-124 448.7 340 78.5
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 8.2e-124 447.6 325 79.4
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 8.2e-124 447.6 328 81.4
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 1.4e-123 446.8 327 81.3
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 1.4e-123 446.8 327 79.2
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 1.8e-123 446.4 325 79.1
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 2.4e-123 446.0 325 80.0
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 3.1e-123 445.7 330 80.3
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 3.1e-123 445.7 326 79.1
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 5.3e-123 444.9 325 78.8
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 9.1e-123 444.1 334 77.8
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.5e-122 442.2 331 79.2
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 4.5e-122 441.8 327 79.8
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 4.5e-122 441.8 326 79.4
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 1.0e-121 440.7 325 80.9
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 1.7e-121 439.9 322 78.6
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 1.7e-121 439.9 327 78.3
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 1.7e-121 439.9 326 80.1
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 2.2e-121 439.5 325 80.6
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 2.2e-121 439.5 328 78.0
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 2.2e-121 439.5 326 78.8
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 2.2e-121 439.5 326 78.2
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 2.9e-121 439.1 327 78.3
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 2.9e-121 439.1 358 74.6
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 3.8e-121 438.7 326 78.2
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 6.5e-121 438.0 326 78.8
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 8.5e-121 437.6 325 80.3
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 8.5e-121 437.6 326 78.8
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 1.9e-120 436.4 328 79.9
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 2.5e-120 436.0 328 78.7
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 4.2e-120 435.3 328 80.5
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 7.2e-120 434.5 327 78.0
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 7.2e-120 434.5 329 79.3
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 9.4e-120 434.1 325 77.8
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.6e-119 433.3 326 77.9
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 1.6e-119 433.3 320 78.4
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 1.6e-119 433.3 322 80.1
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 2.1e-119 433.0 328 78.4
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 2.1e-119 433.0 327 77.7
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 2.1e-119 433.0 327 78.0
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 2.7e-119 432.6 335 76.4
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 3.6e-119 432.2 329 79.6
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 3.6e-119 432.2 325 78.2
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 6.1e-119 431.4 329 76.6
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 8.0e-119 431.0 325 76.9
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.0e-118 430.6 326 78.5
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.3e-118 429.5 329 77.5
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 3.0e-118 429.1 326 78.2
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 4.0e-118 428.7 326 77.9
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 4.0e-118 428.7 326 77.9
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 5.2e-118 428.3 324 76.5
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 5.2e-118 428.3 380 70.3
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 8.8e-118 427.6 330 77.3
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.2e-117 427.2 330 77.3
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.5e-117 426.8 332 76.8
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 2.0e-117 426.4 329 75.7
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 2.6e-117 426.0 329 76.9
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 3.4e-117 425.6 284 84.2
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 5.7e-117 424.9 326 77.0
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 5.7e-117 424.9 326 79.4
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 7.5e-117 424.5 326 77.6
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 7.5e-117 424.5 326 77.6
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 7.5e-117 424.5 328 77.1
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 1.3e-116 423.7 325 77.2
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 2.2e-116 422.9 331 77.0
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 2.2e-116 422.9 320 76.6
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.2e-116 422.9 331 76.7
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 2.2e-116 422.9 327 76.5
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 3.7e-116 422.2 325 78.5
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 6.3e-116 421.4 328 77.1
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 8.3e-116 421.0 328 75.0
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 1.8e-115 419.9 326 76.7
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 1.8e-115 419.9 339 75.5
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 5.4e-115 418.3 323 75.2
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 1.2e-114 417.2 323 77.1
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 1.2e-114 417.2 326 76.1
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 2.7e-114 416.0 326 76.1
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 3.5e-114 415.6 323 77.1
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 3.5e-114 415.6 323 77.1
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 3.5e-114 415.6 327 76.5
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 3.5e-114 415.6 329 76.3
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 3.5e-114 415.6 328 75.9
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 7.7e-114 414.5 327 75.8
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 8.5e-113 411.0 323 76.5
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 8.5e-113 411.0 277 83.0
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 1.1e-112 410.6 328 74.7
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 1.9e-112 409.8 316 77.8
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 3.2e-112 409.1 321 75.1
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 3.2e-112 409.1 329 75.7
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 3.2e-112 409.1 329 75.7
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 4.2e-112 408.7 324 75.9
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 4.2e-112 408.7 323 76.2
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 4.2e-112 408.7 323 76.2
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.6e-111 406.8 259 89.2
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 6.1e-111 404.8 306 71.6
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 8.0e-111 404.4 320 76.6
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 1.4e-110 403.7 326 73.9
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 1.8e-110 403.3 326 76.1
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 1.2e-109 400.6 325 75.4
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.5e-109 400.2 303 79.2
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 2.2e-108 396.4 300 79.0
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 2.8e-108 396.0 279 81.0
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 6.3e-108 394.8 260 78.1
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 9.2e-107 391.0 327 74.3
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 2.0e-106 389.8 261 87.0
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 5.9e-106 388.3 302 78.8
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 1.5e-104 383.6 308 74.7
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 2.1e-103 379.8 302 76.2
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 1.0e-102 377.5 310 75.5
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 1.2e-101 374.0 331 69.5
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 1.2e-101 374.0 334 69.2
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 1.5e-101 373.6 273 77.7
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 5.4e-99 365.2 279 76.0
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 1.2e-98 364.0 333 71.5
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.2e-98 364.0 326 62.6
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.0e-97 360.9 231 90.9
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.8e-95 352.8 233 88.4
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.7e-92 343.6 231 85.3
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 4.9e-92 342.0 327 67.0
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 4.9e-92 342.0 327 67.0
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 8.6e-89 331.3 358 61.7
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 8.9e-86 321.2 315 62.5
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 8.9e-86 321.2 267 65.9
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 6.0e-82 308.5 278 62.6
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 1.0e-81 307.8 252 62.7
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 7.3e-80 301.6 235 81.3
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 8.1e-79 298.1 258 76.0
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 2.3e-78 296.6 246 78.0
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.1e-78 296.2 248 64.9
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 1.5e-77 293.9 250 59.6
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 4.9e-76 288.9 253 75.1
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 1.1e-75 287.7 220 78.2
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 1.9e-59 233.8 275 46.5
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 4.2e-59 232.6 149 77.9
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 5.1e-57 225.7 299 47.5
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 2.4e-54 216.9 125 82.4
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 3.4e-53 213.0 149 75.2
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.1e-51 208.0 124 81.5
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 5.3e-46 189.1 191 68.6
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 4.5e-45 186.0 165 75.2
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.0e-44 184.9 142 73.2
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.2e-35 153.3 262 40.8
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 7.2e-35 152.1 99 80.8
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 1.5e-32 144.4 87 81.6
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 4.3e-32 142.9 95 74.7
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 2.8e-31 140.2 108 76.9
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 3.0e-25 120.2 89 74.2
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 2.0e-21 107.5 169 54.4
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 1.6e-18 97.8 170 52.4
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 6.1e-18 95.9 107 67.3
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 2.6e-16 90.5 122 49.2
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 9.7e-16 88.6 83 79.5
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 1.6e-13 81.3 93 48.4
CAN.G835.4 Capsicum annuum HOM05D000091 ORTHO05D003679 1.1e-06 58.5 36 86.1


User provided reference genes

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