Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 3.5e-153 545.0 303 100.0
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 5.5e-138 494.6 303 90.4
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 1.2e-137 493.4 303 88.8
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 2.1e-137 492.7 303 88.4
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 1.8e-136 489.6 304 85.5
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.3e-136 489.2 303 87.8
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 2.3e-136 489.2 303 87.8
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 4.8e-134 481.5 303 86.5
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 2.4e-133 479.2 307 84.7
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 2.4e-133 479.2 304 84.5
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 2.0e-132 476.1 304 86.8
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 2.0e-132 476.1 303 82.5
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 3.4e-132 475.3 305 84.6
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 4.5e-132 474.9 307 85.7
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 1.3e-131 473.4 305 84.6
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 2.2e-131 472.6 302 82.1
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 2.9e-131 472.2 305 82.0
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 3.8e-131 471.9 306 84.0
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 8.5e-131 470.7 305 84.3
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 2.5e-130 469.2 303 84.5
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 4.2e-130 468.4 305 83.9
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 5.5e-130 468.0 303 83.8
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 7.2e-130 467.6 305 83.9
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 9.4e-130 467.2 307 86.3
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 1.2e-129 466.8 306 81.7
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 1.2e-129 466.8 305 81.3
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 2.1e-129 466.1 304 81.2
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 2.7e-129 465.7 303 79.5
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 2.7e-129 465.7 306 81.4
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 3.6e-129 465.3 306 85.0
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 1.0e-128 463.8 303 82.8
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.4e-128 463.4 306 81.0
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.4e-128 463.4 306 81.0
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.3e-128 462.6 306 81.0
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 5.1e-128 461.5 305 82.3
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 6.7e-128 461.1 305 81.0
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 2.6e-127 459.1 305 80.7
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 2.6e-127 459.1 305 78.4
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 2.6e-127 459.1 305 83.9
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 2.6e-127 459.1 306 80.7
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 4.4e-127 458.4 305 78.4
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 9.7e-127 457.2 303 83.8
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 9.7e-127 457.2 305 80.7
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 2.2e-126 456.1 306 83.7
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 8.2e-126 454.1 303 82.2
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 8.2e-126 454.1 304 82.9
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 1.1e-125 453.8 303 81.8
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 1.8e-125 453.0 305 81.6
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 2.4e-125 452.6 303 77.9
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 3.1e-125 452.2 302 79.8
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 3.1e-125 452.2 305 82.6
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 4.1e-125 451.8 305 78.4
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 5.3e-125 451.4 306 82.4
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 6.9e-125 451.1 303 77.6
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 6.9e-125 451.1 305 82.6
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 9.1e-125 450.7 305 80.0
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 2.6e-124 449.1 303 82.8
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 3.4e-124 448.7 303 82.8
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 5.9e-124 448.0 305 76.4
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 1.3e-123 446.8 305 81.6
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 2.2e-123 446.0 305 81.3
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 2.2e-123 446.0 305 76.7
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 2.9e-123 445.7 299 80.3
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 3.8e-123 445.3 305 82.3
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 5.0e-123 444.9 304 81.9
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 6.5e-123 444.5 305 76.1
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 1.1e-122 443.7 305 75.4
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 1.1e-122 443.7 305 76.7
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 1.4e-122 443.4 303 77.2
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 1.4e-122 443.4 303 78.2
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 3.2e-122 442.2 303 81.5
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 7.2e-122 441.0 304 75.3
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 9.4e-122 440.7 303 81.8
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 9.4e-122 440.7 303 81.8
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 9.4e-122 440.7 303 81.8
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 2.7e-121 439.1 305 76.1
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 2.7e-121 439.1 305 77.4
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 2.7e-121 439.1 305 77.4
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 2.7e-121 439.1 305 76.7
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 3.6e-121 438.7 304 77.3
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 4.7e-121 438.3 305 81.0
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 6.1e-121 438.0 286 81.1
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 1.8e-120 436.4 322 73.3
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 1.8e-120 436.4 322 73.3
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 1.8e-120 436.4 322 73.3
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 2.3e-120 436.0 303 77.6
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 2.3e-120 436.0 305 73.8
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 3.0e-120 435.6 303 78.2
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 3.0e-120 435.6 305 77.0
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 3.9e-120 435.3 305 79.3
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 5.2e-120 434.9 303 78.5
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 8.8e-120 434.1 305 75.1
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 8.8e-120 434.1 314 73.9
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 1.1e-119 433.7 303 78.2
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.5e-119 433.3 305 74.8
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 1.5e-119 433.3 305 74.8
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 2.6e-119 432.6 303 77.9
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 3.3e-119 432.2 305 78.7
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 4.4e-119 431.8 318 73.9
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 3.7e-118 428.7 297 77.1
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 8.2e-118 427.6 305 77.4
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 4.1e-117 425.2 305 79.3
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 1.2e-116 423.7 303 73.9
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.0e-115 420.6 305 79.0
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 1.3e-115 420.2 305 76.4
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 8.5e-115 417.5 305 72.8
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 5.5e-114 414.8 306 71.6
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 4.7e-113 411.8 281 81.1
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.0e-112 410.6 300 74.0
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 4.4e-111 405.2 303 79.5
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 9.1e-109 397.5 312 72.1
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 1.5e-106 390.2 304 67.4
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 5.5e-106 388.3 303 70.3
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 6.8e-104 381.3 304 68.8
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 1.1e-101 374.0 303 65.3
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 2.1e-97 359.8 294 69.4
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 6.6e-91 338.2 304 59.2
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 4.7e-89 332.0 323 57.3
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 2.0e-87 326.6 195 80.5
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 3.4e-87 325.9 253 74.3
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 5.6e-82 308.5 303 61.1
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 4.7e-81 305.4 306 55.6
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 1.1e-80 304.3 299 56.2
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 7.5e-79 298.1 253 66.4
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 1.3e-75 287.3 303 58.7
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 2.1e-68 263.5 302 51.0
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 4.3e-66 255.8 134 92.5
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 9.9e-63 244.6 200 70.0
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 3.9e-59 232.6 272 57.4
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 8.1e-57 224.9 194 73.7
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 1.4e-56 224.2 210 66.2
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 1.3e-51 207.6 308 46.1
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 2.8e-49 199.9 295 45.8
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 3.6e-49 199.5 194 63.4
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.2e-46 190.3 168 72.0
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 5.4e-45 185.7 232 54.3
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 7.1e-45 185.3 194 62.4
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 9.6e-42 174.9 201 51.2
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 2.9e-38 163.3 111 75.7
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 2.9e-38 163.3 101 76.2
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 3.3e-34 149.8 181 50.8
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 5.6e-34 149.1 217 47.5
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 4.5e-31 139.4 83 77.1
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 1.9e-26 124.0 303 40.6
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 3.3e-26 123.2 303 40.3
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 5.3e-24 115.9 153 54.2
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 1.4e-21 107.8 58 84.5
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 9.4e-21 105.1 61 78.7
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 9.4e-21 105.1 58 81.0
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 1.5e-18 97.8 64 71.9
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 1.1e-16 91.7 119 63.0
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 2.4e-16 90.5 118 59.3
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 1.7e-14 84.3 146 46.6
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 3.2e-13 80.1 68 63.2
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 6.1e-12 75.9 99 60.6
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 5.1e-11 72.8 51 80.4
BolC1t04500H Brassica oleracea HOM05D004662 ORTHO05D005771 8.5e-06 55.5 78 43.6


User provided reference genes

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