Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 2.1e-106 389.0 198 100.0
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 5.4e-86 321.2 196 84.7
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 5.4e-86 321.2 196 83.2
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 4.6e-85 318.2 195 81.5
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 3.9e-84 315.1 198 80.8
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 6.6e-84 314.3 196 82.1
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 8.7e-84 313.9 195 82.1
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 1.9e-83 312.8 193 80.3
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 4.3e-83 311.6 196 80.6
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 7.3e-83 310.8 198 78.8
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 9.6e-83 310.5 196 79.6
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 2.1e-82 309.3 191 80.1
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 2.8e-82 308.9 196 79.1
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 3.6e-82 308.5 195 79.5
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 3.6e-82 308.5 196 79.1
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 3.6e-82 308.5 194 79.4
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 3.6e-82 308.5 194 81.4
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 4.8e-82 308.1 196 79.6
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 4.8e-82 308.1 198 78.8
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 8.1e-82 307.4 191 80.1
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 1.4e-81 306.6 196 79.6
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 1.8e-81 306.2 199 77.9
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 1.8e-81 306.2 199 77.9
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 1.8e-81 306.2 198 77.8
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 4.0e-81 305.1 192 79.7
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 6.9e-81 304.3 195 79.5
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 6.9e-81 304.3 201 76.6
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 9.0e-81 303.9 192 81.2
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 1.2e-80 303.5 201 76.1
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 3.4e-80 302.0 193 78.8
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 5.8e-80 301.2 190 78.9
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 7.6e-80 300.8 191 78.5
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 1.3e-79 300.1 189 79.9
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 1.9e-78 296.2 190 76.3
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 1.9e-78 296.2 196 77.6
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 2.4e-78 295.8 189 81.0
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 3.2e-78 295.4 198 77.8
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 4.2e-78 295.0 192 77.6
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 5.4e-78 294.7 194 76.8
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 5.4e-78 294.7 192 77.6
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 7.1e-78 294.3 183 82.5
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 1.2e-77 293.5 194 76.8
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 2.1e-77 292.7 194 76.8
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 2.1e-77 292.7 196 77.0
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 3.5e-77 292.0 198 75.3
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 7.9e-77 290.8 192 75.0
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 1.3e-76 290.0 195 75.9
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 1.7e-76 289.7 196 77.0
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 2.3e-76 289.3 198 76.8
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 3.0e-76 288.9 192 76.0
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 5.1e-76 288.1 191 77.0
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 1.1e-75 287.0 192 74.0
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 1.1e-75 287.0 181 79.6
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 1.1e-75 287.0 187 77.0
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.9e-75 286.2 191 74.3
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.9e-75 286.2 191 74.3
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 2.5e-75 285.8 200 75.0
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 4.3e-75 285.0 191 73.8
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 9.6e-75 283.9 190 74.7
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 1.3e-74 283.5 186 77.4
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 1.3e-74 283.5 189 75.1
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 1.6e-74 283.1 188 77.7
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 1.6e-74 283.1 196 74.0
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 1.6e-74 283.1 218 68.8
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 2.1e-74 282.7 207 74.4
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 3.6e-74 282.0 193 75.6
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 6.2e-74 281.2 194 71.6
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 1.4e-73 280.0 196 72.4
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 2.4e-73 279.3 193 76.7
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 1.2e-72 276.9 195 72.3
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 2.0e-72 276.2 187 74.3
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 2.0e-72 276.2 187 74.3
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 3.4e-72 275.4 187 73.8
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 3.4e-72 275.4 187 74.3
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 4.5e-72 275.0 200 72.5
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 9.9e-72 273.9 188 73.4
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 9.9e-72 273.9 190 73.7
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 1.3e-71 273.5 187 73.3
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 1.7e-71 273.1 187 73.3
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 3.8e-71 271.9 187 73.3
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 8.4e-71 270.8 244 60.2
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 8.4e-71 270.8 244 60.2
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 1.2e-69 266.9 189 73.5
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 6.0e-69 264.6 188 71.8
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 7.9e-69 264.2 168 82.1
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 2.3e-68 262.7 200 70.5
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 8.7e-68 260.8 195 72.8
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 1.5e-67 260.0 188 72.9
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 5.6e-67 258.1 196 69.9
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 6.2e-66 254.6 185 69.2
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 3.1e-65 252.3 163 76.7
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 2.2e-63 246.1 190 64.2
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 1.9e-62 243.0 185 68.1
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 3.3e-59 232.3 163 69.9
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 3.1e-57 225.7 148 77.0
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.4e-54 216.9 191 62.3
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 5.5e-54 214.9 189 60.3
Dinv06003 Davidia involucrata HOM05D000780 ORTHO05D008187 2.7e-53 212.6 140 77.1
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 1.8e-49 199.9 112 90.2
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 2.6e-48 196.1 121 84.3
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 5.0e-47 191.8 259 48.3
TWI60G0996 Tripterygium wilfordii HOM05D000780 ORTHO05D008187 8.5e-47 191.0 138 71.0
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 5.5e-46 188.3 110 85.5
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 2.3e-44 183.0 141 70.2
Zm00001eb258800 Zea mays HOM05D000780 ORTHO05D008187 3.0e-44 182.6 139 67.6
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 6.7e-44 181.4 113 79.6
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 4.5e-40 168.7 198 49.5
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 1.6e-37 160.2 198 49.0
Dinv18279 Davidia involucrata HOM05D000780 ORTHO05D008187 5.1e-36 155.2 121 66.1
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 2.0e-35 153.3 105 72.4
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 5.7e-35 151.8 84 89.3
ClCG03G011510 Citrullus lanatus HOM05D000780 ORTHO05D008187 1.3e-34 150.6 115 68.7
AagrBONN_evm.TU.Sc2ySwM_228.3966 Anthoceros agrestis HOM05D000780 ORTHO05D008187 3.2e-30 136.0 142 52.1
Haze_04451 Corylus avellana HOM05D000780 ORTHO05D008187 5.5e-30 135.2 141 52.5
SalBow1G3250 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.3e-26 124.0 83 69.9
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 2.0e-24 116.7 137 54.0
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 2.9e-23 112.8 153 46.4
SalBow1G5540 Salvia bowleyana HOM05D000780 ORTHO05D008187 3.8e-23 112.5 83 66.3
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 1.0e-20 104.4 59 84.7
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 7.5e-19 98.2 197 34.0
SalBow1G6941 Salvia bowleyana HOM05D000780 ORTHO05D008187 2.7e-13 79.7 56 64.3
SalBow1G1556 Salvia bowleyana HOM05D000111 ORTHO05D013786 1.5e-11 73.9 109 45.9
Cpa.g.c42374 Carica papaya HOM05D000780 ORTHO05D008187 6.3e-10 68.6 51 58.8
Psat7g095160 Pisum sativum HOM05D000780 ORTHO05D008187 2.3e-07 60.1 51 60.8


User provided reference genes

Program Settings