Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 2.4e-62 241.9 112 100.0
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 4.7e-26 121.3 79 78.5
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 1.4e-25 119.8 79 78.5
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 2.3e-25 119.0 79 75.9
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 3.9e-25 118.2 79 75.9
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 5.2e-25 117.9 79 75.9
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 5.2e-25 117.9 79 75.9
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 8.8e-25 117.1 76 78.9
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 1.1e-24 116.7 79 74.7
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 1.5e-24 116.3 79 74.7
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 2.0e-24 115.9 79 73.4
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 2.0e-24 115.9 79 74.7
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 2.0e-24 115.9 79 73.4
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 2.6e-24 115.5 79 73.4
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 2.6e-24 115.5 79 73.4
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 2.6e-24 115.5 76 77.6
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 3.3e-24 115.2 79 73.4
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 4.4e-24 114.8 79 73.4
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 4.4e-24 114.8 79 73.4
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 4.4e-24 114.8 79 73.4
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 4.4e-24 114.8 79 72.2
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 4.4e-24 114.8 79 73.4
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 5.7e-24 114.4 79 72.2
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 5.7e-24 114.4 79 72.2
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 5.7e-24 114.4 79 73.4
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 5.7e-24 114.4 79 73.4
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 5.7e-24 114.4 76 76.3
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 5.7e-24 114.4 76 76.3
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 5.7e-24 114.4 79 73.4
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 7.4e-24 114.0 79 74.7
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 9.7e-24 113.6 76 73.7
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 9.7e-24 113.6 79 73.4
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 9.7e-24 113.6 79 72.2
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 9.7e-24 113.6 79 72.2
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 1.3e-23 113.2 79 72.2
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 1.3e-23 113.2 79 72.2
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 1.3e-23 113.2 76 75.0
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 1.7e-23 112.8 79 73.4
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 1.7e-23 112.8 79 72.2
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 1.7e-23 112.8 79 70.9
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 2.2e-23 112.5 76 75.0
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 2.2e-23 112.5 79 73.4
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 2.2e-23 112.5 79 70.9
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 2.2e-23 112.5 79 70.9
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 2.2e-23 112.5 79 70.9
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 2.2e-23 112.5 79 70.9
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 2.8e-23 112.1 79 72.2
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 2.8e-23 112.1 80 71.2
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 3.7e-23 111.7 79 70.9
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 3.7e-23 111.7 79 70.9
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 4.8e-23 111.3 79 72.2
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 4.8e-23 111.3 76 72.4
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 4.8e-23 111.3 76 75.0
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 4.8e-23 111.3 79 72.2
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 6.3e-23 110.9 79 69.6
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 8.2e-23 110.5 76 72.4
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 8.2e-23 110.5 79 70.9
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 1.1e-22 110.2 79 70.9
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 1.4e-22 109.8 80 68.8
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 1.4e-22 109.8 76 72.4
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 1.4e-22 109.8 79 69.6
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 1.4e-22 109.8 79 69.6
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 1.8e-22 109.4 79 72.2
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 1.8e-22 109.4 79 70.9
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 1.8e-22 109.4 79 70.9
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 2.4e-22 109.0 79 70.9
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 2.4e-22 109.0 79 70.9
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 3.1e-22 108.6 80 67.5
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 3.1e-22 108.6 79 70.9
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 4.1e-22 108.2 79 70.9
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 5.3e-22 107.8 76 75.0
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 5.3e-22 107.8 76 69.7
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 5.3e-22 107.8 79 68.4
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 5.3e-22 107.8 79 67.1
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 7.0e-22 107.5 79 69.6
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 9.1e-22 107.1 80 66.2
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 9.1e-22 107.1 79 68.4
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 1.2e-21 106.7 80 65.0
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 1.2e-21 106.7 76 69.7
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 1.2e-21 106.7 79 68.4
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 1.6e-21 106.3 80 65.0
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 1.6e-21 106.3 80 66.2
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 1.6e-21 106.3 80 66.2
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 1.6e-21 106.3 80 65.0
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 1.6e-21 106.3 80 65.0
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 1.6e-21 106.3 79 68.4
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 1.6e-21 106.3 79 68.4
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 1.6e-21 106.3 79 68.4
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 2.6e-21 105.5 76 67.1
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 3.5e-21 105.1 80 65.0
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 3.5e-21 105.1 80 65.0
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 3.5e-21 105.1 80 65.0
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 3.5e-21 105.1 80 65.0
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 3.5e-21 105.1 80 65.0
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 3.5e-21 105.1 80 66.2
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 3.5e-21 105.1 76 68.4
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 4.5e-21 104.8 80 65.0
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 5.9e-21 104.4 80 65.0
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 5.9e-21 104.4 79 67.1
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 7.7e-21 104.0 80 63.8
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 7.7e-21 104.0 80 63.8
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 7.7e-21 104.0 80 63.8
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 7.7e-21 104.0 80 63.8
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 1.3e-20 103.2 80 63.8
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 1.7e-20 102.8 80 62.5
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 1.7e-20 102.8 79 65.8
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 1.7e-20 102.8 79 65.8
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 2.2e-20 102.4 80 62.5
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 6.5e-20 100.9 80 66.2
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 8.5e-20 100.5 80 62.5
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 8.5e-20 100.5 79 63.3
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 1.9e-19 99.4 71 71.8
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 3.2e-19 98.6 72 66.7
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 6.1e-18 94.4 79 59.5
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 1.4e-17 93.2 76 63.2
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 3.0e-17 92.0 76 61.8
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 4.0e-17 91.7 58 79.3
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 6.7e-17 90.9 79 57.0
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 2.6e-16 89.0 76 57.9
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 4.4e-16 88.2 70 62.9
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 4.4e-16 88.2 55 78.2
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 4.8e-15 84.7 74 56.8
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 6.3e-15 84.3 70 60.0
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 1.0e-12 77.0 76 48.7
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 3.8e-12 75.1 79 53.2
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 3.8e-12 75.1 79 53.2
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 1.9e-11 72.8 41 80.5
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 7.2e-11 70.9 76 47.4
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 1.6e-10 69.7 41 78.0
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 1.8e-09 66.2 41 70.7
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 2.3e-09 65.9 41 75.6


User provided reference genes

Program Settings