Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 7.5e-242 840.1 430 100.0
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 2.2e-193 679.1 428 80.8
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 3.9e-190 668.3 429 79.5
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 6.3e-180 634.4 430 75.6
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 1.1e-179 633.6 433 75.8
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 3.1e-179 632.1 429 74.8
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 5.0e-177 624.8 414 76.8
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 8.5e-177 624.0 432 75.0
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 2.5e-176 622.5 430 74.7
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 3.6e-175 618.6 427 73.5
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 3.6e-175 618.6 428 73.1
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 8.0e-175 617.5 428 73.4
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 1.8e-174 616.3 427 74.0
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 2.3e-174 615.9 416 74.8
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 3.9e-174 615.1 427 73.8
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 5.2e-174 614.8 419 74.5
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 6.7e-174 614.4 430 73.0
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 2.0e-173 612.8 414 74.9
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 3.3e-173 612.1 427 73.5
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 1.3e-172 610.1 414 74.6
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 2.8e-172 609.0 414 74.4
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 4.8e-172 608.2 427 73.1
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 3.1e-171 605.5 424 74.3
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 5.3e-171 604.7 429 71.3
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 9.1e-171 604.0 426 72.8
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 9.1e-171 604.0 427 73.5
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 4.5e-170 601.7 414 73.2
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 3.8e-169 598.6 449 70.8
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 1.1e-168 597.0 434 70.3
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 1.1e-168 597.0 414 73.9
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 1.9e-168 596.3 399 75.7
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 2.5e-168 595.9 427 72.4
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 3.2e-168 595.5 412 73.8
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.6e-167 593.2 428 71.0
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 2.7e-167 592.4 427 70.3
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 3.6e-167 592.0 418 72.5
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 8.0e-167 590.9 429 69.5
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 8.0e-167 590.9 415 72.0
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 1.8e-166 589.7 414 72.0
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 4.0e-166 588.6 427 70.0
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 6.7e-166 587.8 458 67.0
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 6.7e-166 587.8 428 70.8
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 8.8e-166 587.4 424 71.5
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 1.2e-165 587.0 470 66.0
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 2.2e-164 582.8 423 70.4
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 2.8e-164 582.4 431 70.1
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 3.7e-164 582.0 428 69.2
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 3.7e-164 582.0 426 70.7
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 4.8e-164 581.6 427 69.3
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 1.4e-163 580.1 419 70.2
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 3.1e-163 578.9 428 69.6
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 4.1e-163 578.6 422 69.4
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 5.3e-163 578.2 424 69.8
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 7.0e-163 577.8 425 70.4
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 9.1e-163 577.4 427 68.6
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 9.1e-163 577.4 430 69.8
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.6e-162 576.6 427 68.6
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 2.0e-162 576.2 427 68.4
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 2.7e-162 575.9 425 70.1
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 4.5e-162 575.1 424 69.6
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 4.5e-162 575.1 425 69.9
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 4.5e-162 575.1 431 68.9
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 1.0e-161 573.9 415 70.8
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 1.3e-161 573.5 423 69.7
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 1.7e-161 573.2 415 71.3
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 6.5e-161 571.2 415 69.9
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 1.5e-160 570.1 454 65.6
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 3.2e-160 568.9 428 68.0
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 4.2e-160 568.5 405 70.4
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 7.2e-160 567.8 427 68.4
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 1.6e-159 566.6 414 69.8
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 2.7e-159 565.8 434 68.9
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 6.1e-159 564.7 431 68.7
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 8.0e-159 564.3 425 68.0
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 1.8e-158 563.1 431 69.1
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 5.2e-158 561.6 403 70.7
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 8.8e-158 560.8 423 67.8
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 1.2e-157 560.5 428 68.0
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 2.0e-157 559.7 423 67.1
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 2.2e-156 556.2 418 68.9
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 2.2e-156 556.2 396 72.7
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 3.7e-156 555.4 428 67.3
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 4.8e-156 555.1 417 69.8
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 8.3e-156 554.3 415 69.6
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 1.8e-155 553.1 428 67.3
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 4.1e-155 552.0 403 70.0
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 4.5e-154 548.5 418 68.7
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 1.0e-153 547.4 418 67.5
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 1.0e-153 547.4 414 67.6
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 6.6e-153 544.7 418 67.9
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 6.6e-153 544.7 432 66.9
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 1.5e-152 543.5 441 65.3
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 4.2e-152 542.0 402 68.9
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 3.0e-150 535.8 364 73.9
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 6.8e-150 534.6 416 66.8
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 3.4e-149 532.3 416 66.8
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 3.4e-149 532.3 416 66.8
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 5.4e-147 525.0 363 73.8
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 1.6e-146 523.5 417 65.5
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 8.6e-145 517.7 414 64.7
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 9.5e-144 514.2 414 64.5
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 2.3e-142 509.6 403 65.8
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 2.3e-142 509.6 403 65.8
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 3.1e-142 509.2 403 65.3
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 3.1e-142 509.2 403 65.3
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 4.4e-141 505.4 426 61.7
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 7.5e-141 504.6 403 65.5
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 1.4e-139 500.4 415 63.1
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 2.4e-139 499.6 418 64.4
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 3.2e-139 499.2 418 64.4
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 1.5e-136 490.3 446 60.3
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 1.6e-135 486.9 322 77.6
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 1.2e-133 480.7 443 59.8
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 6.6e-129 464.9 419 61.3
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 6.6e-129 464.9 419 61.3
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 2.5e-128 463.0 419 61.1
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 1.2e-127 460.7 348 69.0
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 6.8e-126 454.9 406 58.1
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 1.6e-122 443.7 371 62.0
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 1.7e-116 423.7 416 56.0
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 2.2e-116 423.3 358 60.9
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 7.1e-107 391.7 308 66.2
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 1.3e-105 387.5 326 59.5
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 4.3e-104 382.5 426 53.8
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 6.9e-102 375.2 274 71.2
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 1.9e-99 367.1 362 56.9
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 4.9e-92 342.4 468 45.7
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 6.3e-71 272.3 264 57.6
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 1.5e-69 267.7 257 54.1
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 7.2e-67 258.8 381 43.6
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 2.1e-66 257.3 230 60.0
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 1.2e-61 241.5 297 44.4
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 2.6e-61 240.4 207 66.2
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 3.2e-51 206.8 341 38.4
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 4.2e-51 206.5 157 65.0
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 4.0e-49 199.9 155 65.2
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.7e-44 184.5 130 66.9
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 3.8e-44 183.3 113 80.5
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 7.2e-43 179.1 155 58.1
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 1.4e-41 174.9 196 51.5
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 5.7e-40 169.5 136 69.1
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 3.1e-38 163.7 288 37.5
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 5.5e-35 152.9 120 65.8
Actinidia29200 Actinidia chinensis HOM05D000283 ORTHO05D019495 1.7e-31 141.4 98 71.4
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 1.2e-26 125.2 82 79.3
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 8.0e-26 122.5 82 78.0
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 8.0e-26 122.5 85 72.9
HanXRQChr09g0246591 Helianthus annuus HOM05D000283 ORTHO05D005391 8.9e-17 92.4 62 64.5
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 9.8e-16 89.0 50 82.0
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 8.3e-15 85.9 50 78.0
Medtr1g115940 Medicago truncatula HOM05D000283 ORTHO05D019495 2.4e-14 84.3 159 34.6
BraA03t11440Z Brassica rapa HOM05D000283 ORTHO05D019495 2.1e-13 81.3 85 50.6
BcaB01g03663 Brassica carinata HOM05D033592 ORTHO05D019495 5.6e-11 73.2 108 46.3
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 9.5e-11 72.4 52 63.5
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 2.8e-10 70.9 81 48.1
Psat7g108960 Pisum sativum HOM05D000283 ORTHO05D030474 1.5e-08 65.1 64 54.7
A03p22060 Brassica napus HOM05D000283 ORTHO05D019495 1.3e-07 62.0 60 51.7
AUR62041649 Chenopodium quinoa HOM05D002494 ORTHO05D002673 7.1e-06 56.2 223 28.3


User provided reference genes

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