Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 6.5e-57 223.8 110 100.0
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 3.5e-10 68.6 53 69.8
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 1.3e-09 66.6 53 67.9
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.7e-09 66.2 105 43.8
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 3.0e-09 65.5 53 66.0
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 3.0e-09 65.5 105 41.9
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 5.1e-09 64.7 52 67.3
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 6.6e-09 64.3 71 54.9
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 8.7e-09 63.9 53 64.2
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.1e-08 63.5 53 64.2
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 1.5e-08 63.2 53 64.2
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 1.5e-08 63.2 53 64.2
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 1.9e-08 62.8 53 62.3
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 1.9e-08 62.8 53 62.3
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 2.5e-08 62.4 53 62.3
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 2.5e-08 62.4 53 62.3
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 3.3e-08 62.0 84 46.4
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 3.3e-08 62.0 53 62.3
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 3.3e-08 62.0 53 62.3
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 3.3e-08 62.0 53 62.3
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 3.3e-08 62.0 53 62.3
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 3.3e-08 62.0 53 62.3
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 3.3e-08 62.0 53 62.3
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 3.3e-08 62.0 53 62.3
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 3.3e-08 62.0 53 62.3
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 3.3e-08 62.0 53 62.3
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 3.3e-08 62.0 53 62.3
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 4.3e-08 61.6 53 60.4
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 4.3e-08 61.6 53 60.4
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 4.3e-08 61.6 53 60.4
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 4.3e-08 61.6 53 60.4
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 4.3e-08 61.6 53 60.4
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 4.3e-08 61.6 53 62.3
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 4.3e-08 61.6 53 64.2
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 5.6e-08 61.2 53 62.3
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 5.6e-08 61.2 53 62.3
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 5.6e-08 61.2 53 60.4
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 5.6e-08 61.2 53 62.3
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 5.6e-08 61.2 53 62.3
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 5.6e-08 61.2 53 62.3
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 5.6e-08 61.2 53 62.3
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 5.6e-08 61.2 53 60.4
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 5.6e-08 61.2 53 62.3
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 5.6e-08 61.2 53 62.3
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 5.6e-08 61.2 53 60.4
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 7.3e-08 60.8 53 60.4
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 7.3e-08 60.8 53 60.4
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 7.3e-08 60.8 53 60.4
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 7.3e-08 60.8 53 62.3
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 7.3e-08 60.8 53 62.3
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 7.3e-08 60.8 53 60.4
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 7.3e-08 60.8 53 62.3
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 7.3e-08 60.8 53 60.4
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 9.6e-08 60.5 53 60.4
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 9.6e-08 60.5 53 60.4
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 9.6e-08 60.5 53 58.5
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 9.6e-08 60.5 53 58.5
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 1.3e-07 60.1 53 60.4
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 1.3e-07 60.1 53 60.4
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 1.3e-07 60.1 53 60.4
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 1.6e-07 59.7 53 60.4
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 1.6e-07 59.7 53 58.5
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 1.6e-07 59.7 53 60.4
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.6e-07 59.7 73 49.3
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 1.6e-07 59.7 53 58.5
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.6e-07 59.7 53 60.4
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.6e-07 59.7 53 60.4
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 1.6e-07 59.7 53 58.5
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 2.1e-07 59.3 106 42.5
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 2.1e-07 59.3 53 60.4
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 2.1e-07 59.3 53 58.5
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 2.1e-07 59.3 106 40.6
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 2.1e-07 59.3 53 60.4
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 2.1e-07 59.3 53 60.4
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 2.1e-07 59.3 53 60.4
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 2.1e-07 59.3 53 60.4
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 2.1e-07 59.3 53 60.4
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 2.1e-07 59.3 53 60.4
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 2.1e-07 59.3 53 60.4
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 2.8e-07 58.9 105 41.9
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 2.8e-07 58.9 53 60.4
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 2.8e-07 58.9 53 60.4
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 2.8e-07 58.9 53 60.4
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 3.6e-07 58.5 53 58.5
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 3.6e-07 58.5 53 58.5
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 3.6e-07 58.5 53 58.5
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 4.8e-07 58.2 53 58.5
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 4.8e-07 58.2 53 58.5
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 4.8e-07 58.2 53 58.5
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 4.8e-07 58.2 53 58.5
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 4.8e-07 58.2 52 63.5
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 4.8e-07 58.2 53 58.5
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 6.2e-07 57.8 53 58.5
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 6.2e-07 57.8 106 39.6
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 6.2e-07 57.8 53 58.5
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 6.2e-07 57.8 53 58.5
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 8.1e-07 57.4 53 58.5
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 8.1e-07 57.4 53 58.5
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 1.1e-06 57.0 53 58.5
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 1.1e-06 57.0 53 58.5
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 1.1e-06 57.0 53 58.5
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 1.1e-06 57.0 53 58.5
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 1.1e-06 57.0 53 58.5
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 1.1e-06 57.0 53 58.5
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 1.1e-06 57.0 53 58.5
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 1.1e-06 57.0 53 58.5
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.4e-06 56.6 53 56.6
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.4e-06 56.6 53 56.6
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 1.4e-06 56.6 53 54.7
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 1.8e-06 56.2 53 56.6
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 1.8e-06 56.2 53 56.6
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 2.4e-06 55.8 49 61.2
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 2.4e-06 55.8 53 58.5
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 2.4e-06 55.8 53 58.5
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 2.4e-06 55.8 53 56.6
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 2.4e-06 55.8 53 56.6
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 3.1e-06 55.5 53 56.6
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 3.1e-06 55.5 53 56.6
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 4.0e-06 55.1 53 56.6
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 4.0e-06 55.1 53 54.7
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 4.0e-06 55.1 53 54.7
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 5.3e-06 54.7 53 56.6
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 6.9e-06 54.3 109 38.5
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 6.9e-06 54.3 109 38.5
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 6.9e-06 54.3 109 38.5
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 6.9e-06 54.3 109 38.5
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 6.9e-06 54.3 109 38.5
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 6.9e-06 54.3 53 54.7


User provided reference genes

Program Settings