Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 0.0e+00 1156.7 591 100.0
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 2.6e-269 931.8 598 80.9
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 4.5e-245 851.3 667 70.9
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 7.7e-245 850.5 506 84.4
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 6.5e-244 847.4 595 76.1
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 4.1e-238 828.2 591 72.9
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 4.1e-238 828.2 591 72.9
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 5.9e-229 797.7 581 71.1
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 5.9e-229 797.7 601 69.4
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 1.0e-228 797.0 581 71.3
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 2.2e-228 795.8 601 70.5
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 6.5e-228 794.3 596 69.3
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 2.5e-227 792.3 582 72.0
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 5.5e-227 791.2 599 71.6
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 1.6e-226 789.6 514 76.1
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 2.1e-226 789.3 599 71.3
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 3.6e-226 788.5 606 69.3
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 8.0e-226 787.3 593 69.3
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.8e-225 786.2 591 71.2
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.3e-225 785.8 510 77.3
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 8.8e-225 783.9 517 75.8
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.2e-224 783.5 617 69.0
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.5e-224 783.1 619 66.6
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 2.0e-224 782.7 514 76.3
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 2.6e-224 782.3 607 67.9
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 4.4e-224 781.6 598 68.2
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 4.4e-224 781.6 605 67.3
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 9.8e-224 780.4 513 76.4
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 1.3e-223 780.0 602 69.1
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 1.7e-223 779.6 523 75.7
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.8e-223 778.9 510 77.1
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 6.3e-223 777.7 511 75.9
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 6.3e-223 777.7 588 70.4
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.1e-222 776.9 507 75.3
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 5.4e-222 774.6 588 69.2
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 9.1e-222 773.9 523 74.2
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 9.1e-222 773.9 602 67.3
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 1.2e-221 773.5 599 69.4
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 1.0e-220 770.4 593 68.5
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 1.0e-220 770.4 510 75.7
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 2.9e-220 768.8 540 72.8
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 6.5e-220 767.7 607 67.9
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 6.5e-220 767.7 504 76.0
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 8.5e-220 767.3 523 74.2
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 1.5e-219 766.5 509 73.9
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 3.2e-219 765.4 509 74.7
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 4.2e-219 765.0 507 75.3
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 9.4e-219 763.8 601 67.6
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 2.7e-218 762.3 515 75.3
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 4.7e-218 761.5 505 74.3
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 4.7e-218 761.5 505 74.5
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 1.4e-217 760.0 605 66.8
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 4.0e-217 758.4 533 71.5
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 8.8e-217 757.3 610 67.5
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 2.6e-216 755.7 604 66.6
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 4.4e-216 755.0 594 67.0
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 7.5e-216 754.2 602 66.3
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.7e-215 753.1 602 67.8
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 6.3e-215 751.1 597 66.2
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 6.3e-215 751.1 597 66.2
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 6.3e-215 751.1 508 73.8
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 1.4e-214 750.0 580 67.6
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 1.8e-214 749.6 599 66.1
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 2.4e-214 749.2 598 66.1
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 3.1e-214 748.8 602 66.1
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 4.1e-214 748.4 600 66.3
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 4.1e-214 748.4 606 66.2
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 9.1e-214 747.3 597 65.8
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 9.1e-214 747.3 595 65.5
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 1.2e-213 746.9 607 64.7
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 4.5e-213 745.0 501 74.1
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 7.7e-213 744.2 612 65.8
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 1.7e-212 743.0 600 65.0
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 8.6e-212 740.7 505 73.3
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 8.6e-212 740.7 509 72.3
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 1.5e-211 740.0 505 72.3
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 3.3e-211 738.8 505 72.3
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 4.2e-211 738.4 509 72.1
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 1.6e-210 736.5 593 65.3
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 2.3e-209 732.6 599 64.1
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.5e-208 729.9 515 70.5
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 3.7e-207 725.3 600 65.5
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 4.9e-207 724.9 521 71.0
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 1.4e-206 723.4 658 62.0
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 7.0e-206 721.1 642 62.3
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 1.2e-205 720.3 588 66.8
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 4.7e-202 708.4 583 64.3
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 8.9e-201 704.1 460 76.5
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 4.4e-200 701.8 529 69.6
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 3.2e-190 669.1 511 66.9
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 3.2e-190 669.1 459 72.8
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 4.1e-190 668.7 507 67.5
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 1.7e-188 663.3 499 66.1
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 9.5e-187 657.5 454 71.1
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 1.3e-183 647.1 589 57.6
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 1.7e-183 646.7 601 60.4
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.2e-181 640.6 536 61.6
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 7.8e-181 637.9 644 55.7
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 8.6e-180 634.4 476 66.8
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 5.8e-176 621.7 603 57.7
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 5.3e-169 598.6 558 59.3
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 9.9e-168 594.3 369 78.6
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 2.3e-164 583.2 480 65.2
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 4.3e-163 578.9 439 66.7
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.2e-160 570.9 547 54.7
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.4e-158 563.1 525 57.7
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 7.4e-147 525.0 521 55.5
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 2.5e-142 510.0 345 74.8
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 6.3e-138 495.4 508 56.5
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.9e-135 486.5 436 55.5
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 1.3e-130 471.1 485 50.9
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 1.9e-126 457.2 519 48.0
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 1.0e-124 451.4 419 60.6
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 1.8e-124 450.7 453 50.3
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.0e-116 424.9 392 55.6
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 3.7e-114 416.4 406 60.1
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.3e-108 397.1 266 77.1
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.5e-107 394.4 462 49.1
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 9.1e-105 385.2 480 45.4
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 1.4e-92 344.7 204 81.9
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.0e-92 343.6 282 59.2
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 2.3e-76 290.8 239 64.0
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 2.4e-73 280.8 202 67.3
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 2.3e-71 274.2 173 75.1
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 2.2e-66 257.7 262 49.6
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.6e-64 251.5 391 39.6
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 2.3e-63 247.7 169 75.1
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 7.3e-62 242.7 277 48.0
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 4.0e-60 236.9 178 64.6
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 3.5e-56 223.8 132 82.6
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 1.0e-55 222.2 284 45.8
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 7.3e-54 216.1 217 53.9
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.7e-48 197.6 128 74.2
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.3e-46 190.7 177 58.2
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 2.8e-45 187.6 113 81.4
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 3.8e-42 177.2 273 42.5
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 2.6e-35 154.5 106 71.7
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 1.1e-33 149.1 269 36.1
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 5.5e-33 146.7 140 56.4
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.2e-32 145.6 122 58.2
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 3.7e-29 134.0 95 71.6
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 1.0e-26 125.9 165 42.4
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.3e-26 125.6 269 34.2
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 5.1e-23 113.6 112 51.8
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 5.1e-23 113.6 85 58.8
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 4.8e-21 107.1 232 37.1
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 2.4e-20 104.8 77 68.8
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 2.0e-19 101.7 56 94.6
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.4e-19 100.9 91 57.1
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 7.7e-19 99.8 57 89.5
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.2e-18 98.2 92 55.4
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 2.5e-17 94.7 71 66.2
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 3.6e-16 90.9 71 63.4
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 6.7e-15 86.7 55 78.2
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 5.7e-14 83.6 248 27.8
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 2.1e-08 65.1 59 52.5
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 3.6e-08 64.3 109 36.7
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 3.6e-08 64.3 36 86.1
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 6.1e-08 63.5 275 22.5
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.0e-07 62.8 40 77.5


User provided reference genes

Program Settings