Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 3594.3 1961 100.0
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 2698.3 1805 80.3
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 2647.1 1934 76.7
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2603.5 1938 75.9
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2567.3 1847 75.1
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2386.3 1946 70.5
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2381.7 1921 70.1
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2380.9 1946 69.8
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2372.0 1911 70.2
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2359.3 1844 69.5
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2302.7 1943 67.1
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2301.6 1966 66.4
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2278.8 1941 67.6
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2277.3 1945 65.7
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2254.9 1943 66.6
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2246.9 1839 67.2
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2245.7 1946 66.4
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2242.2 1936 66.4
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2241.5 1947 66.6
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2239.9 1807 68.0
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2230.3 1944 66.2
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2226.8 1941 66.6
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2223.4 1940 65.7
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 2216.0 1802 67.8
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2209.9 1953 65.7
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2206.4 1937 66.2
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2204.1 1936 65.0
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2202.6 1936 64.9
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2197.2 1812 66.4
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2195.2 1835 66.3
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2194.1 1871 65.9
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2190.2 1941 65.0
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2190.2 1839 66.1
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2186.0 1915 65.4
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2185.6 1899 65.6
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2182.5 1942 65.9
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2181.4 1940 64.8
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2176.0 1831 65.7
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2175.2 1939 65.2
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2174.4 1918 65.5
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2171.0 1887 66.5
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2166.0 1940 63.6
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2163.7 1971 64.1
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2159.4 1943 63.4
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2157.1 2045 62.1
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2155.6 1929 63.8
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2154.4 1942 64.5
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2151.3 1836 64.9
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2149.8 1947 64.0
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2148.6 1942 64.4
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2144.4 1937 64.4
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2143.2 1939 64.7
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2140.5 1956 63.9
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2136.7 1929 63.5
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2132.1 1894 64.7
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2131.7 1853 64.0
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 2125.5 1939 63.6
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2125.1 1940 64.1
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2117.0 1934 64.6
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2111.3 1956 62.7
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2109.0 1834 63.3
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2106.6 1934 63.8
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2101.6 1805 64.7
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 2096.2 1946 62.4
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2093.9 1936 63.1
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2088.5 1943 62.4
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2077.0 1935 62.4
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 2075.1 1943 63.1
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2073.1 1941 62.6
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2057.7 1949 62.4
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2049.6 1838 62.9
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2045.0 1779 66.6
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2034.6 1922 62.1
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2027.7 1833 61.6
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2016.5 1944 61.7
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 2015.7 1945 60.5
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 1986.1 1831 61.9
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1973.4 1865 60.3
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1959.5 1700 63.8
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1928.3 1974 59.1
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1923.7 1844 58.8
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1922.9 1839 58.8
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1867.0 1738 61.3
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1857.0 1833 57.2
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1854.7 1849 57.3
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1849.7 1968 56.7
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1834.3 1834 57.0
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1825.4 1880 56.3
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1762.3 1918 53.9
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1746.1 1888 54.3
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1738.0 1943 55.3
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1726.5 1890 54.0
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1726.5 1890 54.0
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1721.4 1892 54.1
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1719.5 1891 54.2
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1718.0 1847 54.8
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1716.4 1884 54.2
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1716.0 1884 53.7
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1714.1 1888 53.8
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1713.7 1884 54.1
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1708.7 1896 53.7
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1700.6 1895 53.8
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1693.3 1898 53.5
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1693.3 1898 53.5
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1689.9 1884 53.7
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1686.4 1956 54.0
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1621.3 1961 51.9
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1576.6 1844 51.0
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1550.0 1237 68.4
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1528.1 1239 69.4
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1500.7 1942 50.2
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1481.1 1951 47.5
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1455.7 1237 67.3
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1434.5 1915 47.3
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1434.5 1915 47.3
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1426.0 1499 57.6
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1410.2 1871 47.0
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1397.5 1075 73.7
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1367.8 1345 57.0
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1199.1 1510 51.7
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1196.4 1027 67.8
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1194.9 1797 44.4
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 0.0e+00 1177.9 1442 53.4
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1166.0 930 68.4
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1098.2 1347 52.7
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1082.8 838 73.2
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 1.4e-298 1030.8 866 67.3
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.5e-281 974.2 1838 38.1
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 1.3e-280 971.1 1621 41.3
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.7e-256 891.0 809 61.7
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 2.2e-243 847.4 839 57.7
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.0e-221 773.5 599 72.8
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 1.2e-188 665.6 647 55.2
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.3e-187 662.1 650 56.8
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 2.3e-181 641.3 717 52.4
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 4.1e-178 630.6 501 66.7
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.8e-166 591.3 449 75.7
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 7.8e-161 573.2 622 53.1
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.3e-159 567.8 545 62.8
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.8e-150 537.3 542 60.9
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 3.6e-113 414.8 1235 28.3
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 5.7e-111 407.5 423 55.8
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 3.8e-99 368.2 467 48.4
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 8.3e-86 323.9 646 36.5
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 3.2e-85 322.0 2078 23.2
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 4.3e-82 311.6 465 42.4
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 6.8e-80 304.3 862 33.3
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.4e-71 275.4 225 70.2
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 2.3e-64 252.7 261 70.5
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 2.2e-62 246.1 208 68.8
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.4e-61 243.4 426 39.4
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 6.0e-60 238.0 455 40.2
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 2.3e-51 209.5 271 46.5
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 1.9e-42 179.9 233 51.5
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 4.2e-37 162.2 180 73.3
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 5.5e-21 108.6 187 43.3
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 4.8e-17 95.5 78 60.3
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 4.2e-13 82.4 52 69.2
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 4.6e-12 79.0 90 48.9
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 6.1e-12 78.6 63 63.5
Atru.chr7.2708 Acer truncatum HOM05D002037 ORTHO05D005261 2.5e-10 73.2 124 69.4
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 3.3e-10 72.8 161 35.4
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 1.7e-09 70.5 60 58.3
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 8.2e-09 68.2 33 84.8
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.4e-08 67.4 51 58.8


User provided reference genes

Program Settings