Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 6.5e-180 634.0 338 100.0
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 2.0e-152 542.7 338 79.0
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 2.0e-152 542.7 338 79.0
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 1.1e-147 526.9 338 79.6
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 9.4e-139 497.3 338 74.0
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 1.7e-135 486.5 337 73.3
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 2.7e-130 469.2 340 70.6
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 4.7e-130 468.4 340 70.0
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 8.0e-130 467.6 340 68.2
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 4.0e-129 465.3 332 69.3
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.5e-128 463.4 341 68.6
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 2.0e-128 463.0 332 69.0
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 3.4e-128 462.2 341 69.5
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 3.4e-128 462.2 332 69.3
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 9.8e-128 460.7 337 69.1
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 1.3e-127 460.3 341 69.2
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 3.7e-127 458.8 338 68.6
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 4.9e-127 458.4 332 68.1
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 4.9e-127 458.4 341 68.0
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 2.4e-126 456.1 332 68.4
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 5.4e-126 454.9 332 67.8
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 4.5e-125 451.8 339 68.1
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 1.3e-124 450.3 340 66.5
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 1.7e-124 449.9 337 68.0
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 3.3e-123 445.7 337 67.1
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 4.3e-123 445.3 340 67.9
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 5.6e-123 444.9 338 67.8
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 7.3e-123 444.5 340 66.8
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 9.5e-123 444.1 340 65.9
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 9.5e-123 444.1 341 67.2
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 3.6e-122 442.2 339 67.0
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 3.6e-122 442.2 339 67.0
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 4.7e-122 441.8 339 66.4
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 6.1e-122 441.4 339 67.3
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 6.1e-122 441.4 346 66.2
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 8.0e-122 441.0 338 67.2
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 1.0e-121 440.7 340 66.5
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 1.8e-121 439.9 339 67.3
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 2.3e-121 439.5 339 65.8
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 4.0e-121 438.7 339 65.8
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 4.0e-121 438.7 339 64.9
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 6.8e-121 438.0 338 67.5
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 6.8e-121 438.0 330 67.9
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 6.8e-121 438.0 345 68.1
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 8.9e-121 437.6 339 65.8
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 1.2e-120 437.2 339 66.1
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 3.4e-120 435.6 338 66.6
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 4.4e-120 435.3 345 71.3
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 7.5e-120 434.5 337 66.2
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 1.3e-119 433.7 339 66.4
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 2.2e-119 433.0 339 64.9
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 2.2e-119 433.0 330 67.0
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 4.9e-119 431.8 339 65.8
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 1.1e-118 430.6 339 64.9
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 4.1e-118 428.7 340 63.8
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 5.4e-118 428.3 341 64.2
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 9.2e-118 427.6 339 64.6
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 9.2e-118 427.6 339 63.4
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 9.2e-118 427.6 340 65.0
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 1.6e-117 426.8 340 66.8
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 3.5e-117 425.6 344 65.1
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 4.6e-117 425.2 339 63.7
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 3.9e-116 422.2 340 62.6
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 5.0e-116 421.8 324 67.6
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 6.6e-116 421.4 342 64.9
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 2.5e-115 419.5 337 62.9
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.3e-115 418.7 337 64.4
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 5.6e-115 418.3 341 63.6
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 7.3e-115 417.9 341 63.6
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 7.3e-115 417.9 339 64.0
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 9.5e-115 417.5 337 62.6
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 1.6e-114 416.8 340 64.4
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.6e-114 416.8 339 67.3
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 2.1e-114 416.4 341 63.6
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 2.8e-114 416.0 341 63.0
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 2.8e-114 416.0 341 63.3
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 1.0e-113 414.1 341 63.3
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 2.3e-113 412.9 341 63.0
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 4.0e-113 412.1 340 62.6
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 5.2e-113 411.8 341 63.0
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 6.8e-113 411.4 341 63.0
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 1.5e-112 410.2 336 63.1
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 1.5e-112 410.2 339 62.8
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 2.0e-112 409.8 333 62.8
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 3.4e-112 409.1 340 62.9
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 3.4e-112 409.1 341 61.6
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 7.5e-112 407.9 340 62.1
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 9.8e-112 407.5 385 57.4
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 9.8e-112 407.5 335 64.2
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 2.9e-111 406.0 330 63.0
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 2.9e-111 406.0 330 63.0
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 2.9e-111 406.0 341 61.9
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 4.9e-111 405.2 326 61.0
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.4e-110 403.7 341 62.5
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 7.0e-110 401.4 339 60.8
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 1.2e-109 400.6 341 62.5
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 1.6e-109 400.2 355 61.7
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 1.6e-109 400.2 356 61.5
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 2.0e-109 399.8 330 62.1
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 1.7e-108 396.7 342 62.6
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 1.7e-108 396.7 339 61.9
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.5e-104 383.6 361 57.3
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 2.6e-104 382.9 340 60.3
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 1.2e-101 374.0 355 59.2
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 2.7e-101 372.9 336 58.6
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 3.0e-100 369.4 360 55.6
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 3.0e-100 369.4 360 55.6
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 1.5e-96 357.1 353 56.1
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 4.4e-96 355.5 290 63.8
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 5.8e-96 355.1 342 56.7
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 9.9e-96 354.4 353 55.8
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 5.4e-94 348.6 351 57.0
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 1.9e-91 340.1 269 64.7
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 1.1e-89 334.3 335 56.7
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 3.8e-87 325.9 343 53.1
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 2.7e-85 319.7 266 72.6
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 4.9e-79 298.9 247 64.4
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 5.6e-75 285.4 236 67.4
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 1.8e-73 280.4 354 52.8
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 1.8e-73 280.4 215 66.0
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 3.1e-73 279.6 327 50.8
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 1.5e-64 250.8 244 54.1
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 2.9e-63 246.5 193 64.8
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 3.5e-61 239.6 185 64.3
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.9e-54 217.2 344 39.2
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 5.5e-54 215.7 381 39.6
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.2e-53 214.5 350 38.9
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.0e-52 211.5 216 54.6
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 1.3e-50 204.5 225 53.3
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 1.7e-50 204.1 350 38.9
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 7.7e-48 195.3 354 39.8
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 6.3e-42 175.6 372 34.1
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 1.8e-41 174.1 174 50.6
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.1e-35 154.8 380 31.8
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 4.7e-29 132.9 345 32.5
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 5.3e-25 119.4 349 29.8
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 4.5e-24 116.3 124 49.2
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 2.2e-23 114.0 147 45.6
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 3.2e-22 110.2 92 56.5
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 7.2e-22 109.0 106 50.0
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 9.4e-22 108.6 84 61.9
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 1.0e-20 105.1 92 54.3
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 6.8e-20 102.4 125 42.4
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 8.3e-18 95.5 122 47.5
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 5.4e-17 92.8 55 80.0
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 2.7e-16 90.5 72 58.3
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 4.5e-16 89.7 80 57.5
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 5.0e-15 86.3 149 33.6
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 9.5e-14 82.0 58 70.7
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 1.6e-13 81.3 81 42.0
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 9.8e-11 72.0 41 78.0
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.1e-09 68.6 160 31.2
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 2.0e-08 64.3 107 39.3
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 5.9e-08 62.8 166 24.1
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 1.1e-06 58.5 53 47.2
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 1.9e-06 57.8 42 61.9


User provided reference genes

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