Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 3.9e-56 221.1 102 100.0
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.3e-18 95.1 74 59.5
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.3e-18 95.1 74 59.5
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 5.6e-18 94.4 76 60.5
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 2.1e-17 92.4 86 55.8
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 3.6e-17 91.7 74 56.8
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 6.1e-17 90.9 86 54.7
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 6.1e-17 90.9 74 58.1
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 8.0e-17 90.5 63 63.5
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 8.0e-17 90.5 77 57.1
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 8.0e-17 90.5 74 55.4
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 8.0e-17 90.5 74 55.4
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 1.0e-16 90.1 76 59.2
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 2.3e-16 89.0 74 55.4
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 3.0e-16 88.6 76 59.2
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 3.0e-16 88.6 76 59.2
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 4.0e-16 88.2 68 63.2
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 4.0e-16 88.2 76 56.6
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 5.2e-16 87.8 76 59.2
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 5.2e-16 87.8 76 59.2
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 6.8e-16 87.4 74 58.1
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 8.9e-16 87.0 81 56.8
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 8.9e-16 87.0 76 59.2
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 8.9e-16 87.0 73 58.9
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 8.9e-16 87.0 81 56.8
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 1.2e-15 86.7 76 56.6
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 1.2e-15 86.7 76 59.2
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 1.5e-15 86.3 70 60.0
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 1.5e-15 86.3 76 57.9
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.5e-15 86.3 81 55.6
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.5e-15 86.3 81 55.6
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.5e-15 86.3 81 55.6
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.5e-15 86.3 70 58.6
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 1.5e-15 86.3 81 54.3
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 2.6e-15 85.5 76 55.3
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 3.4e-15 85.1 76 56.6
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 3.4e-15 85.1 67 58.2
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 3.4e-15 85.1 70 55.7
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 4.4e-15 84.7 64 64.1
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 4.4e-15 84.7 86 47.7
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 5.8e-15 84.3 75 57.3
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 5.8e-15 84.3 75 57.3
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 5.8e-15 84.3 81 54.3
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 7.5e-15 84.0 79 55.7
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 7.5e-15 84.0 76 56.6
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 7.5e-15 84.0 76 56.6
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 1.3e-14 83.2 76 52.6
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 1.3e-14 83.2 76 52.6
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 1.3e-14 83.2 66 60.6
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 1.3e-14 83.2 76 56.6
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 1.3e-14 83.2 66 62.1
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.3e-14 83.2 76 56.6
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 1.7e-14 82.8 76 52.6
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.7e-14 82.8 77 53.2
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.7e-14 82.8 93 40.9
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 2.2e-14 82.4 76 55.3
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 2.2e-14 82.4 69 58.0
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 2.2e-14 82.4 70 60.0
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 2.2e-14 82.4 67 61.2
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 2.9e-14 82.0 81 53.1
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 2.9e-14 82.0 56 69.6
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.9e-14 82.0 67 58.2
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 2.9e-14 82.0 75 56.0
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 2.9e-14 82.0 70 58.6
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 2.9e-14 82.0 70 55.7
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 2.9e-14 82.0 76 53.9
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 2.9e-14 82.0 66 60.6
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.9e-14 82.0 66 57.6
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.9e-14 82.0 66 57.6
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 3.7e-14 81.6 70 57.1
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 3.7e-14 81.6 70 58.6
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 3.7e-14 81.6 79 45.6
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 3.7e-14 81.6 86 46.5
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 4.9e-14 81.3 66 57.6
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 4.9e-14 81.3 74 55.4
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 6.4e-14 80.9 67 56.7
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 6.4e-14 80.9 86 50.0
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 6.4e-14 80.9 86 50.0
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 6.4e-14 80.9 86 50.0
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 6.4e-14 80.9 86 50.0
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 6.4e-14 80.9 77 51.9
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 6.4e-14 80.9 66 60.6
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 6.4e-14 80.9 76 50.0
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 6.4e-14 80.9 74 55.4
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 6.4e-14 80.9 93 46.2
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 6.4e-14 80.9 93 46.2
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 8.3e-14 80.5 66 57.6
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 1.1e-13 80.1 70 57.1
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 1.1e-13 80.1 76 50.0
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 1.1e-13 80.1 70 55.7
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 1.1e-13 80.1 87 48.3
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 1.4e-13 79.7 76 50.0
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 2.4e-13 79.0 73 52.1
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.4e-13 79.0 86 50.0
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 2.4e-13 79.0 64 60.9
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 3.2e-13 78.6 86 48.8
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 3.2e-13 78.6 69 55.1
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 3.2e-13 78.6 90 46.7
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 4.1e-13 78.2 70 55.7
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 5.4e-13 77.8 79 51.9
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 7.0e-13 77.4 76 53.9
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 7.0e-13 77.4 74 55.4
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 7.0e-13 77.4 70 54.3
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 9.2e-13 77.0 86 48.8
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 9.2e-13 77.0 67 52.2
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 9.2e-13 77.0 76 51.3
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 9.2e-13 77.0 76 51.3
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 1.2e-12 76.6 67 52.2
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 1.2e-12 76.6 67 52.2
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 1.2e-12 76.6 67 50.7
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 1.2e-12 76.6 67 52.2
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 1.2e-12 76.6 76 50.0
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 1.2e-12 76.6 67 52.2
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 1.6e-12 76.3 88 46.6
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 1.6e-12 76.3 76 48.7
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 2.7e-12 75.5 67 50.7
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 2.7e-12 75.5 67 50.7
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 2.7e-12 75.5 67 50.7
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 2.7e-12 75.5 67 50.7
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 2.7e-12 75.5 67 50.7
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 2.7e-12 75.5 67 50.7
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 3.5e-12 75.1 67 56.7
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 4.6e-12 74.7 66 56.1
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.0e-11 73.6 94 41.5
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 1.3e-11 73.2 64 54.7
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 1.7e-11 72.8 77 46.8
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 2.3e-11 72.4 70 52.9
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 3.0e-11 72.0 72 45.8
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 5.0e-11 71.2 84 41.7
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 2.5e-10 68.9 83 43.4
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 5.6e-10 67.8 78 47.4
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 7.3e-10 67.4 76 46.1
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 1.2e-09 66.6 66 51.5
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 4.7e-09 64.7 72 43.1
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 1.4e-08 63.2 56 57.1
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 5.2e-08 61.2 60 48.3
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 6.8e-08 60.8 67 41.8
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 8.9e-08 60.5 74 41.9
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 1.5e-07 59.7 64 43.8


User provided reference genes

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