Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 0.0e+00 2387.1 1331 100.0
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 0.0e+00 1509.2 1320 68.6
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 0.0e+00 1336.2 1177 65.4
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 0.0e+00 1258.4 1368 57.7
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 0.0e+00 1232.6 1337 61.0
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 0.0e+00 1215.3 1347 57.3
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 0.0e+00 1169.5 1345 57.5
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1156.7 1345 57.2
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 1136.7 1343 58.2
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 1134.4 1344 58.1
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 0.0e+00 1118.6 1350 56.0
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1117.4 1436 54.5
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 0.0e+00 1103.2 1390 51.0
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1101.7 1377 52.3
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 0.0e+00 1099.0 1387 54.6
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 0.0e+00 1094.7 1358 57.0
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1080.1 1373 54.7
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 0.0e+00 1079.3 1197 55.1
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 1.1e-310 1070.5 1376 52.8
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 4.0e-310 1068.5 1385 54.1
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 1.2e-309 1067.0 1355 52.2
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 1.9e-307 1059.7 1376 52.8
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 2.7e-306 1055.8 1375 54.8
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 3.5e-306 1055.4 1344 51.1
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 1.0e-305 1053.9 1369 51.7
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 2.4e-302 1042.7 1336 51.3
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 7.6e-301 1037.7 1429 51.9
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 2.2e-300 1036.2 1132 53.9
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 1.1e-299 1033.9 1371 53.0
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 3.5e-298 1028.9 1374 51.0
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 6.0e-298 1028.1 1346 52.7
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 7.9e-298 1027.7 1327 52.0
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 8.7e-297 1024.2 1351 52.5
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 1.5e-296 1023.5 1328 49.7
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 1.9e-296 1023.1 1408 54.5
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 3.3e-296 1022.3 1335 50.9
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 4.3e-296 1021.9 1136 56.5
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 5.7e-296 1021.5 1300 53.8
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 1.6e-295 1020.0 1343 52.6
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 3.1e-294 1015.8 1360 54.4
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 3.1e-294 1015.8 1366 52.9
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 3.8e-292 1008.8 1387 51.9
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 6.5e-292 1008.1 1327 51.9
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 8.5e-292 1007.7 1358 51.3
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 1.4e-291 1006.9 1344 50.7
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 2.5e-291 1006.1 1393 52.0
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 1.8e-289 1000.0 1361 53.0
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 3.9e-289 998.8 1379 52.6
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 8.8e-289 997.7 1367 52.0
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 1.5e-288 996.9 1326 51.1
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 3.7e-287 992.3 1366 51.4
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 8.2e-287 991.1 1188 56.8
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 9.1e-286 987.6 1407 51.3
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 1.2e-285 987.3 909 59.4
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 5.0e-284 981.9 1341 50.8
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 3.6e-282 975.7 1352 50.5
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 3.6e-282 975.7 1331 51.9
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 8.8e-281 971.1 1423 50.5
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 3.3e-280 969.1 1251 50.8
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 2.0e-277 959.9 1340 50.2
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 1.0e-276 957.6 1335 49.1
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 1.2e-274 950.7 1359 49.2
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 4.7e-274 948.7 1382 49.7
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 2.6e-272 943.0 1363 53.1
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 3.3e-272 942.6 1332 50.5
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 9.7e-272 941.0 1356 49.0
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 2.8e-271 939.5 1328 50.4
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 4.8e-271 938.7 1359 48.9
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 7.0e-270 934.9 1334 50.5
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 6.5e-268 928.3 1364 48.6
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 1.5e-267 927.2 1335 49.0
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 8.8e-265 917.9 1411 49.7
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 6.3e-263 911.8 1314 50.2
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 2.4e-262 909.8 1379 47.7
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 1.3e-260 904.0 1492 46.1
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 5.5e-259 898.7 1342 48.0
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 2.6e-256 889.8 1352 49.0
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 2.0e-253 880.2 1333 48.4
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 6.6e-252 875.2 1368 46.6
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 7.2e-251 871.7 1381 45.3
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 1.6e-250 870.5 1388 44.7
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 4.7e-250 869.0 1368 45.8
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 3.0e-249 866.3 1359 46.2
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 4.9e-247 859.0 1389 44.8
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 1.4e-246 857.4 1390 45.0
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 3.1e-246 856.3 1338 46.9
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 7.3e-243 845.1 1021 51.5
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 9.5e-243 844.7 1320 50.6
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 1.0e-241 841.3 1369 45.4
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 6.8e-241 838.6 1318 48.9
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 2.6e-240 836.6 1381 45.8
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 1.3e-239 834.3 1387 43.7
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 4.3e-235 819.3 1361 42.9
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 4.3e-235 819.3 1361 42.9
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 4.3e-235 819.3 1350 43.8
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 6.2e-234 815.5 1159 50.3
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 4.0e-233 812.8 1358 43.7
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 6.8e-233 812.0 1352 43.8
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 2.1e-226 790.4 1350 42.8
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 1.7e-223 780.8 1313 46.7
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 1.3e-220 771.2 1490 42.8
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 2.3e-220 770.4 1272 43.2
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.3e-219 766.1 1097 47.9
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 1.2e-218 764.6 1463 43.2
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 6.0e-213 745.7 1325 43.7
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 3.2e-206 723.4 1352 44.5
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 5.4e-206 722.6 1061 50.7
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.5e-203 714.5 1000 53.0
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 2.4e-201 707.2 939 47.6
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.5e-200 703.0 797 52.3
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 3.0e-196 690.3 781 53.9
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 5.8e-184 649.4 1308 39.1
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 3.0e-180 637.1 899 45.8
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 1.5e-176 624.8 1354 39.4
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 6.1e-173 612.8 1166 41.2
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 4.1e-169 600.1 994 42.7
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 5.0e-159 566.6 1353 38.3
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 4.5e-152 543.5 1177 36.6
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 1.5e-134 485.3 1213 36.6
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 1.2e-133 482.3 1244 35.1
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 1.5e-131 475.3 526 52.7
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 1.3e-130 472.2 1220 35.9
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 3.9e-127 460.7 1221 36.9
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 1.2e-120 439.1 893 46.4
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 1.0e-119 436.0 1334 33.4
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 1.2e-107 396.0 1372 30.3
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 3.2e-105 387.9 1359 32.2
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 2.5e-94 351.7 434 47.2
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 3.3e-94 351.3 1355 31.4
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 4.8e-85 320.9 1153 29.7
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 6.2e-85 320.5 312 59.3
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 4.2e-73 281.2 454 41.9
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 9.3e-73 280.0 1283 31.1
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 5.1e-71 274.2 357 46.2
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 1.0e-63 250.0 865 28.9
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 5.1e-63 247.7 864 29.7
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 7.4e-62 243.8 985 29.4
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 6.3e-61 240.7 944 29.9
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 2.0e-59 235.7 1089 29.7
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 2.3e-55 222.2 882 27.9
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 2.6e-51 208.8 204 55.9
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 1.9e-49 202.6 381 39.4
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 7.2e-49 200.7 961 28.2
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 2.3e-47 195.7 427 35.6
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 3.9e-47 194.9 251 45.8
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 3.9e-47 194.9 443 37.7
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 6.3e-45 187.6 204 52.5
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 1.4e-44 186.4 857 28.1
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 3.5e-43 181.8 850 26.6
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 6.5e-42 177.6 212 51.9
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 1.9e-41 176.0 184 51.1
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 9.4e-41 173.7 670 28.1
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 4.0e-39 168.3 171 53.2
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 5.7e-38 164.5 1035 25.3
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 1.1e-36 160.2 1055 24.2
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 9.1e-36 157.1 1442 23.6
Oeu011104.1 Olea europaea HOM05D001849 ORTHO05D004075 2.9e-34 152.1 199 65.3
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 2.7e-32 145.6 693 26.3
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 2.7e-32 145.6 820 24.5
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 2.7e-32 145.6 1004 24.1
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 1.4e-31 143.3 920 24.6
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 3.7e-29 135.2 680 27.2
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 6.3e-29 134.4 586 38.1
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 1.2e-22 113.6 172 45.3
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 2.6e-22 112.5 105 53.3
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 2.4e-20 105.9 199 30.2
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 1.6e-19 103.2 140 43.6
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.9e-17 96.3 352 35.5
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 2.5e-17 95.9 123 40.7
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 5.6e-17 94.7 83 55.4
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 7.3e-17 94.4 120 46.7
Atru.chr11.323 Acer truncatum HOM05D001849 ORTHO05D004075 6.1e-16 91.3 465 28.6
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 5.2e-15 88.2 88 48.9
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 3.2e-12 79.0 261 34.9
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 7.8e-11 74.3 86 43.0
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 5.6e-09 68.2 72 50.0
Medtr3g035000 Medicago truncatula HOM05D000079 ORTHO05D004075 1.0e-07 63.9 49 55.1
SEGI_04298 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 4.0e-07 62.0 129 34.9
Nitab4.5_0004322g0030 Nicotiana tabacum HOM05D001849 ORTHO05D004075 6.8e-07 61.2 34 79.4


User provided reference genes

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